morexGenes - Barley RNA-seq Database

Contig contig_57825

Source Contig contig_57825

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_57825 (5819 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_57825

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70356	3	1090 bp	MLOC_70356.1	Available	Available	LOC_Os04g53850.1, FRAME:-2, EVALUE:1e-102, 13104.m05558 protein leucoanthocyanidin reductase, putative, expressed
MLOC_70355	1	1008 bp	None	Available	Available	None

CDS Structure of MLOC_70356

CDS Structure of MLOC_70355

Contig Sequence (5819 bp)

>contig_57825 5819 assembly3_WGSMorex_rbca.fasta
ATCAACATGGGATCTAGTTTTGCGAAAAAGCCAACGATGAAAACGGTTCGAGATTTGAAC
GCACGGTTTTGGAGATAAAACATTTTGAAAATACAGATCTACGAAAGAAGGGAAAACTCC
CAGGTTACGACAAATGGCACGCATGCAGTGCGCCACTTGTCGCAACCTATGAAGGTGAAA
GTAATCGTTGGAAGGTATATTCGTTAACTAGTGATTTTGCCCCTTATCTCGTGTGTTTGT
CGGGGAGAGGTTTGTACGTATCCTGTAATAAGAGCATCTCCAGCTGCCCCCCTCTCCCCA
ACAGCCCCCAGACGTTTTTTTATCACCGGTGGAAAAATACGTCTAGTTATATCCCAAGGA
GCCCAATTTCCGTCGGTTGGGTCAAAATTCACGCCGGCGGACCCAGCCGAACCCAGCACG
CTGGGAGGCGACCGGGACCATCGACGAAAAGGAAATTTACGCGAAAACAATCCACGCCAG
ATCCGTCCTGTGTAGTCGTCCTCATCGCCTTGCCTCGGCTCCCGTGTGATTCAACGTTGT
CACAGGTCAGCCTTTCATTGATGGTAAGCCACTGTCGTGCGTCCGTGCACTTTCCCGTCG
TGCATTCACACCGCTCTTTCCCGCCACATGTCTACGTCGCTCCTCTCGCCACTATAAAAG
CCGATCTTCGCCGTCGCTCGTCGCACATACCAGCCATCTCTTCGCCTACGCTCTAGCACC
GACCACCTCCTTCTCTCTCAAAAACCCGAGGGAAACGCAATGGCGGAGAGCTTTCTCGGT
GATGGGGTGGCGACCAACGGCTTCGGTCACCGATGGCTGCACGAATGGGAGGCGCCCCTG
CTGCAGGAGGCGAACTACCCGATGCCGCCCGACATGCCCATACCGGGCGCATGTCGACTG
AGTGATGCCGGCGTCCCCATCCTTCCGTCGCCATCCGACGCGGACCGCCCCACCGAGATC
GAGGCGATTCGGGCCGGCTTGCCGGAGGATGCTCGCGTTGTGGACCGCCTACTTCCAGTG
CCGCCACGCCGAGCAGCTAGCGTCTACCAATCGCGTCCCGATGTTGAGGGGCCCAGAACT
CGGAGGGCCACCGTCAACGGTGGGGCGCGCCCGGGCGAACTCTCTTTGATGTCCTCGCGC
ACATCGAGGGAGGCAACGAGCCACGACTCGAGTACCTCGCGTCGTCGTTCTCTCGTCACA
GCGGGAGCTCCTGGGTGCCGAGGCGCATGGACCCATCGTCCTAGTCATCCTCTCACTCCC
GCTCCTTCGGGACAGCGGCACCACTCGTCCCCGTGAAGCCCGAGCCGCAGGAGACGCCGC
TCCGCTGACGCTGCCGCAGCGGCAACCTCGTCATAAACGAGGGCCGTCACGTCCCATCCC
CTCCCCGCGGCCACATTCGACCGATGAAGCCGAAGAAGGAGCCGACGACCGTGGTTAACC
AGGAGCATGAGGACATGGCCGCTGACCTGAAGTGCCGCCTCGCTAGGTCGTGTGTTGACA
ACCTCAAACAGGAGATGGAGCGCCAACACCGTGCTGTGAAAGAAATTACCGAGCGGTGCC
GCGGCCGTGACAAGGGAGGCATCGTCTTGCTCTCCGACAACGACGAGGAGTTCACGACGC
CGAGGAAGCCCCTCCGCAATCGCGATCCAGAACAGGGTTGCAGCAAGGACGCCCCGAAGG
ATGGCCGCCGAGCGACGGTGACGACGGCAATGGCGGCGACGACTACACCGTCTTCTACAA
CTTTCTCGGCATGGACAAGGCGTAATCTTTTGAGCTTTTTTATCTATGTTTTCTTATTCG
CCCAAATTTCAATGAAACTGTCTATATTTCGTCTAAATTGACTGAATTTTGTTGAGTTTG
GGCGTTTAATTTTTTTTAAGGATCGGCTAGGTTCCGTTCGCGGCTGGGAATTGGTGTTCC
CCAGATTAAAAATTTCACCAACGACGTACCAAAAAGCGCTATTTTTCTTCAGAAAAACGC
TTTTGAGGGGTCAAACGAGCTGGAGATGCTCAGTCTGCTGCAGCTACTTGTGGGTGTGTC
GAGAGCTGTGAAACGTTGCTGTGAACACGGACGCAAAGGTAGCAGGGATGCTTGGATCTC
TCACCAGACAACAAGGAGAGGACGACGGGAACGCTGGATCTTGCTTTGGCGACCGGCGCC
GCGCCCAGTGTGGTCACGGGCAACACGGTGACGAGGCTGATGCCCTTCTCCTCCGCGAAT
TCGCTCGCCGCCTTCTCCAGAAGCACCTTCGACACCCCGTATGCCTGCGATGCAAATCAC
ATCGATGGAACCAATACTGTGGACATATTTCCAATTTTCCATTGATGGGGAGAGGGACTG
AACACAAAGATTTGTGTTGTGTACCCAAGTTGGTGGCTTGTTGGCTCTGAGATACTCGAC
GTCGGACCAGGAGCTCTCGTCCAGCACGTGGCCGCCGCCCTGCAGCGGCCTCCTGGACAC
CCCGGCGTTCGACGACGTCAGGATCACGCGCTTCACCGTGCCTGCTCTCGCGCACGACCT
CATCACGTTGAGCGTTCCTTGAACCGCGGGTTCGATCACATCTCTCTACCGTCGGACACA
AAGCAGAGTAAGTTATCCATGAAGAAAAATTAATGAGACCAACCCGGGCTAGACTAGCCT
GCTGATATTTTTTATAGAAAAAAATTCCGTAAGCATCAAATGTTAGAGCCGACGCTTGAA
CACCAATGGGCTGGTTGCAAACTCCAACGTCAAGCCAACTGAGCTAGTTATCCATGAAGA
GAAGAAGCTAGATGCCGGAAGAACAATCGTGTGAATGAAGACGAAACGTCACGTAGATGG
CTGTGTACCTCAGGATCTTCAGACAACATGTTCACCGGAGCGGCGACGAGGAAGACGTAG
TCGCAGCCAGAAACAGCTTCGTCGAAGCTGCCTTCTTCATTCAGATCGGCACGGATGATC
TCCAAGGGCCCAAGCGTTTGCTGCAGGTCTTTGAGGTGGGAGTTCTTCTCCATGTCATCT
AGAATTACCGTATCTTCAGTTAGAAGCGAAAACAATTGCAAGCAAAAGAAGATGAATATG
CAGCAAAACGGTCTTTAGGCATGCATAAGGTCGAACTTGGGATTTGTAGCGCGGGGCAAA
ATTAAGGTCGGCGCCAGCAAATATCCGAAATTTTCAACTCGAACTTGGGAAAGAAAATCG
CCGGCACACACACAACAACAACAGAGTAGAACTGGAAGGAGGAATCGGAATCGGGTCCAA
CCGGGGTTTCTGACGGTGGTCTTGACGGCGTAGCCCTTCTCGAGCAGCAGCTTGATGAGC
GCCGAAGCGATGTAGCCGCTCCCTCCCGTGACGCACGCCGTCTTCCTCCCCTCGCCCGCC
GACATCGCCGGCCGATGCCCGATCGATCTGGCGACGCGATCGAGGGAGGCTGCTCTGCCC
TGCTCTGGTCTGGCCGATTGGCACACTGGCTGATAAAGGTCCTTTTGGTAGATGATAGTG
ACTGACTGCATTATTATTTTGCAGAGTACAGAGGACGAAAGAGATGATACGTACTCGGAG
TACAGCTCGTCCAGTGGTGAGTTGCTGTACATAGGACGACTGCGAGCATTTAGTCAGTAG
GGCACTTGAGGTCGACTTCACGTAGAGAGTGAGATATCTTTTCCCTTTTGTTCAGAAAAC
TTGCGCGCAATATGAGAGGTTTACAAAAATTGTGGTATCCCTCATGCTTTGCTACCTCCT
TTATCCCTTTCCATCAAAACGATAAATAGAGTGAATCTAAGTTTTTCACACGCCCCGCGT
CGCCTACCTGGCGGCTCAAGGGAGGAACCCTAGCCGCCGCCACTACCCCTGCTCCCCATT
GTCTCGTTGATGTCGGAAGGCATCCCCGACGAAGCCACCAGTTCAAGAAAGGTGATGACG
GGACACTTCCCTGCCAGTGCGACGCAAGTGCACGACAAGTTGTTTGGTGGTGAGGCACCT
TCTCCAAGCGGCAAAACGGTAGATTATGGTGATACGACGGCTCTTAGACAGAAAGACAGA
ATGGCGGCGGTGGCAGCGGCGGGTCCAGCAATAGGAGATGTTTTTGCTCGTCCTTGACTT
AGCCATGCCCCCTCCGCCCTCGTCGTCCTCGTCTCCGATGCCGGTAAGAAACACCCCCTC
TCCCAATGTTAGGTTCCGTTGTTAGGCCGTTAGGCGTGCATGATCAATTTCCATGTTGCT
AAACGCATCTTCGATGTGGACTAGGTTACGGATGCACGGATGCGGCTGGTAGTTCAGGCA
GCAACGCTGATATTTGTGATTTAGGCAAGGGCCATGTTCTTGCACAAGAGAGTTGTTCGC
TGTGGGGAGACACCTGTCATCACGTATGCTGCAATGCTTATATGGGAGCAGGAAAGGATC
GCCAATCTAAATTACATATACAACTGCAACGAAACATAGGATCTGTGGATGCTTAGAATG
GAAAGAGCGCCGTTTGCTAGACTTGTCCAGATCTTCAGGAACAGGGGACTTCTGGAAGAA
AGCATCCACACCAGTGTGGAAGAGCAAGCGATCATGTTCCTTCATGTTGTTGGCCATAAC
CAGAGATTTAGCGTTATCCACAACATGTTTAGAAGATCAATGGAGACCACTCAAGGTACT
TCAAGCAAGTGTTGTATGCTGTTGGGGTGCTGAGAGGAGAGATGAACAAGTCACCATCTG
GCCAGACTACTAGCAAGATTCACACTAGTCCAAGATGATATCCACACTTCAAGGTGAGGA
ATGCAGTATGTAGTTCATTGCTTCATATGAGCGAATTGTTCAAGATGAGCACTAACACAG
TCATCTATTGCCATTTCAGCATTGCATTGGGGAAATAGATGGTACTCATGTTACTGCCAG
AGTGCAGAGGTCACAAGCTGCATCATTTAGGTGGAGGAAGCACTACACAAGCCAGAATAT
GCTTGCTGCTATTGACTTTGAAAGGAAGTTCACATATGTGTCGGCTGGCTGGGAAGGGTC
AACACATGATGCTAACATACTCAATGACAACATGACTCGTCCTGATGGCATCAACAACCC
TGATGGCAAGTCCTACCTAGGAGATGCTCGCTATGCATGTAAACCAAGTGTTCTTCCACC
CTTCAGGAAGACCAGGTACCATCTTAACGAGTTCTCTGGTAGGAACTACCCTAGGACTCC
ATAGGAGATGTTCAATCTCAGGAACTCCAGCCTTAGAGTAACCATTGAGAGTGTATTTGG
AGCTTTGAAGAACAGGTTCAAGATCCTGGATCAAAAGCCATTCCACCCTTACCCCACTCA
GGTTAAGCTTGTTCTTACATGTTGCATTCTACATAACTGGATCTTGAAGTGCGGTTTTGA
TGAACTGGTGCCTCAGAACGAAGATGTGGCGCATGACGATCTTGACCTCGGTGGCCATGG
TGTGGATGCCTTTGACAATGATGCCTGGAAGACCAAAAGGATGGAGTGGGCACAAGAAAT
GTGAGATAACAGAGGCTAGACAAGGATCTGAAGAAGAAGCATCAGAAGAGAAATTGGTAG
TAGCAGCAGAGGAAGAGAAACAACAACAACAACAACAACAACCGAAGAGGAAAAGCAACA
ACATCATAAGACATAAGAGGTAGAGGAAGAGGATGCACGATGAACTTCAAGTTTTGGATG
ACAATTGCTTAAGCTCTTGTCAGGTTAAACAAGAATTGATACTTGTCATTAAGATGCTTG
TGATCTGAATCTTTCTTTGCCATTTGTGTAACAACTAAGATGCGGCCCTTTCCTTATNNN
NNGGCGAGGCCTCAAAAGGGGAAGGGGCGCATCTACACGTTTCGCAAACGGGATAATCA