morexGenes - Barley RNA-seq Database

Contig contig_57762

Source Contig contig_57762

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_57762 (4735 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012

Predicted Genes from contig_57762

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70316	1	206 bp	None	Available	Available	None
MLOC_70318	6	1335 bp	MLOC_70318.1	Available	Available	LOC_Os09g23810.1, FRAME:-3, EVALUE:5e-32, 13109.m02254 protein retrotransposon protein, putative, unclassified
MLOC_70317	1	330 bp	MLOC_70317.1	Available	Available	None

CDS Structure of MLOC_70316

CDS Structure of MLOC_70318

CDS Structure of MLOC_70317

Contig Sequence (4735 bp)

>contig_57762 4735 assembly3_WGSMorex_rbca.fasta
AGGGTCGCATCTTCGGCGTGACAAGCTACAAGGAGAGTCATCCTAAACGGCGCCATTCCA
TGGATATCTCATAGTAGCCCATATTCTACGGACAATCACCAAAAGTCATGCGTTTTCGAG
CCTCGTAGCTACCCTAGGCCATTTAGACAACCATCGGCCGATTCAGCTAGAACCGGCAAT
AATTTGAACTACGGGTGCTCCATAGCTTGCCCGTTATTTTTACTAAAAAAATCATTTTTA
GCTTCACGGGTAGGCATTTCATCATATAATCACCAACACATTTGCATGATTCAACCCCTA
GCCACGGACGACCCTCGCAATGAATTCTGCCGGATTTTGAAAAGAACGTAAAAAATGAAA
ACAAATTCAAAAAAATGGTAAAGCTTCACGTCACATCATCACATGTGACCTACTAACTAC
CAAAAATATAAAACTTGGAATACCAATGTTTTCTTGAAAAAGTGTTCTCAAAAATGACCT
ACCACTAATGAAGATCCATTGCTTTCAAGCCAAACGAGCAATGATATGCCCACATTCGTT
GAATAGTCTGTGAAAATATGCCCAAATATGGCACATGCCTTCGTCTTGTGACGGGATACA
ATGTTGTAAAAGAGAGGTTCCAACTTGTTTCACAAAAAAACCATCTTTCATTTTCTGAAT
GCCAAAAACACATGTTTTTCATGAAGCGGCTACAAGGAGAGTCATCCTAAATGGTGCCAT
TCCACGGCTCTCTCAAATTAGACCCTATTTTACGAACAGTCGCCAAAACTCATGCGTTTC
CGAGCCTCGTAGCTACCCCGGCCATTCAGACAGCCATCGGGTGATTCAGATGGAACCAAC
TATATTTTGAACTATGGGTGCTCCATAGCTTGCCCGATATTTTTATTAAAAAACATTTTT
AGCTTCACGGGTAGGCATTTCATCATAGAATCACCAACACATTTGCATGATTCAACCCCT
AGCCACGGACGGCCGTCGCGACGAATTTGGACGAATTTTGAAAAGACCGTAAAATAATAA
AAAAATCAAAAGATGGGAAACCTTCGGGTCACATCATCAGATGTGACCTACCAACTACCA
AAAATTTAAAACATGGAATACCGATGTTTTCTTGAAAAAGTGTTCTCAAAAACGACCTAC
CACGAATGAAGATCCATGGCTTTCAAGCCAAACGAGCAATATTATGCCCACATTCGTTGA
ATAGTTTGTGATAGTATGCCCAAATTTGGCACACGCCTCCATCTTGTGATGGGAAACAAT
GTTGAAAAAGAGAGATTCCAACTTGTTTCATAAAAAAACATTTTCCATTTTCTGAATGCC
AAAAACACGTGTTTTTCGTGAAGCGGCTTCAAGAAGAGTCATCCTAAACGGTGCCATTCC
ATGGCTATCTCAATGTAGACTGTATTTTACAGACAATCGCCTAAACTCATGCATTTTCGT
GGATCGTAGCTACCCCGGCCATTCAGACATCCATCGCACGATTCAACTGGAACCGGCTAT
ATTTTGAACTGTAGGTGCTTCATATCTTGCCCGTTATTTTTACTAAAAATTATTTTTAGC
TTCATGGATAGGCATTTCTCTACTATTAAAAGGGATCTGCCATCGTCGTGATGGTTCGAC
CTCGACCCTTCGCTTTCCGGTTTCCACCTCCCCTCGAGAGAGATCCCGCACCAAAGAAAA
TCGCTAGAAAAAAATCTGTACCGCTCCCGTCCCTCTCTCACTTTTTGCGTTGAAAGCTGG
AAAATAAAAACCAAAAACAGAAACAGCCGCGTCCCACGAACCCGTCTTCTCCCAACCTCC
TCGATCTTGATCTCCTCCATCTCGTGAGTCGTGACGCACCCACGATCTCCCCTCTCTTCT
GCACGATCTAGCCATGCGCACAGGGAGGGTGGTCAACGAGTGCAAGCGGAGGTGAGAGGT
GCTCGTGGCACAGTACAGGGAGGTGCGGCACAGATTGCTGCTCGACAGGGAGGTGCGGCA
CAGATTGCTGCTCCACATCCTGCCGCAGGGGAGATTCCCGATAGCCACCGCACAGCTCCC
CCTCCTCGTCGTGACTGCGTTGGTTCTGATGTGCCCGACCCACGCGTCCAGAAAGTGTGG
ATTTCTCATATGTTCTCGTTTGCGGGCACTGGATCGTTCGCGCTTCATCGTCGAATCGTC
CTCCCTGCTCTCGTTCAGTCGCATCTCGCATGGTCATTGGGATAGACGGATTGACACCTC
TGGCCGTGTTGTGAGTGTGTCCGCCTGTGGTGGGATCCGGCCTTTGTGGGTGGCCATGTC
TGCTTTACGCTGACATGTCGTCGTGCAGCTCATGTTGCCATCCAAAGCTTCCATCCATGG
TGCTGATTACACAGGCGAGGACTTGCCCGTCCATCTGTAGTCTGAGATGTCGCCCTGCTA
TCCTTGTTCCGCCAACGACAATGTCTCCTCTGGCCGCTTATCCCGCTCTGCATCCAAATC
GGGCAACTGCAGTCTGAAGGTAGGCTTCATCGTGGCTTCCTTTTTCTTCATGTTTCTGAT
TATACAGTAGTCTGAATGTCATGAGAGATCGTGGGGGTTCAATGATTAACTGAATAGATG
ATGTCACTTTGTTTGAGTTTGGAGATATTGGGAGTGCCAACCATTGGCGACTCACTTTAT
AATCTGTAATATAATGTTTACTTAGTTTCTGGATAGATTAAAGTGTATGTTGTGCCCATA
AAGTGGTTGAGGAATTGCTCTTGTATAGAAGCGTAGACTAAAAATACAATGGATAGCCCA
AAAAGCTATATGATGACAATCCAAATTTCTACAAGAGTACTAAACACCAACTGCAACTAT
GATTGCAAAGAATACATCTCAACTTTCTTTCTGCTAAATCCTGAATGATCGTTTTTCAAT
ATTTTGGTGCAATCATATCTCAACTACATGATGACACACTACTGACTTATACATAGGATC
TCGAGCCCGCCATGGTAGGACAACTTCGACCATGGAGCGGAGCCAGCGGGCATGGTCCGG
CACGGGCGGCAAGTGATTTTTTGTTCTTATTGATGACTTGTTCCTACACATACATCCGGA
GAAAGCAGATGTATACGATGTTCACTTTGAGAGGCTGAACTGAACAACGTAAAAACAAGA
GGCTGAACTGAATTAGGTTGATATGAAGGGATTAACAAAGGATCAACGTGCCACCATGGT
GGTGGTGGTCCGTGATATTTTAAGAACAACGGTGAGGTAATATCATGTAGTTGTGCTCAG
TACTTTTCGTTTGTCTGTTGAAGGATTTATATGATTACAACATTTACTTTATAGCCACAC
TTGTTTTTTTCTTCTAGGCGAGCTCAGTTTGCACAGTCCTCCCCAATGACCATTTCAGAG
GCTGGACATAAGTAAATTTCTGGTTGATGTATTTTCTACCTGTTCTAGCGACCATTGTGC
GCAATTTAAACTAGCACGCCTGATTATGTTCTGTGGGTCTGCCCTTAGCTTGTAGGTATC
CTGTTAGATACAAACAACCTTTCCAAGATGTTCTCAGAAAAAGATTCAGAAGCAGTGTGA
TCGCCTCTTGTTCGGTAACTCTGAACAGAAGAGGCGGGAACTATTTCAACAATGTAATGT
ACTACTCTTCATTTGACATCGATTTACAAACATAAAATGTATGGAGAAGTTGCAACATCT
TTTAGTAATAACTGATGGTAACTTTGACATTTCTTTGGACCAGTGATGCTTACTCACAAT
GATCATCCTTTTTTTTTGAGAAAACGCAAAAGACTTTGCGTTTCATTGTATTGAAAAGAG
GAGGAGACAACCTCCGGGAGGCTAGTACAAAGGTGTTACAACCAGATCAGTGCATATCCC
AGGTGGGTGGCAGGGTGACCCTAAGCCCCTTGGCCCCTGCCTGCGCCCAATTCCTGGAAT
CGTCCTTGATTGCATCGGCGAGCTCAACTAGCGATGGGGTTACATGGTCGAATACACACG
CGTTCCTATGCTTCCAGATCATCCACGACACGAGAAGCGCAATCGAGGCCAACGCTTTGC
GGAGCGGGTGAGGCGTGGCATCGCGAGCGCGTAGCCACCAATCCTGCAGCGAGGCATCCT
GGTCGGGCACAGGTGCCGGTAGTCGCAGCCAGGACATGATCCCGTGCCAGGTCTGCTTCG
CGAATGGGCAAGCGAGCAGCAGGTGCTGCATCGTCTCCGGTTCCTGGTCGCAAAGAAGGC
ACCGAGGGTGATGCGTTAGGCCATGCCGAGCAAGGCGCTCCGCAGTCCAACAACGGTCCT
GATTGGCGAGCCAGTGGAAGAATTTGACCTTTGGAGGGGCCCATCCTTTGCCGAGTTCTT
GAAGAACACCTACAGAAAGTCATCCATGGATGGTAAGTTTTCTCCATAATATCTTCACAT
GGTTCCTCACCTATTTTTAGGAAATTCTTTCCTTAAGTTACTGTATATTTATCCATGTCA
AAGATAAATTTGCAATGTGCTCATTAAACTAAAACACCATTGCTGAATTATTGTTGTTCA
AATTAACTAGGTGATGTGTACAATCCCCCAAGCAAAAGCATTCAATGTACTCTGCTTATT
TATTGTGTCCATGTTGTGTTTTCTCCTATAAGTTGCATGCTTGTTACAGAGGTCTGTATT
CCTACAGGCTCAGGAGGATCTCAATATTGCTAAAGAAAGAGACAAGGATCAGCACTATAT
TTGTTGAAAAAAAACTCGGAGGCATGTATCATATGAATTATCATATGCAGCGGGC