Map Locations of contig_5772 (11075 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_5772

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70277 1 4224 bp MLOC_70277.1 Available Available LOC_Os03g51020.1, FRAME:+2, EVALUE:0.0, 13103.m05547 protein expressed protein
MLOC_70278 1 1985 bp MLOC_70278.1 Available Available LOC_Os03g51590.1, FRAME:-1, EVALUE:1e-16, 13103.m05617 protein hypothetical protein





CDS Structure of MLOC_70277






CDS Structure of MLOC_70278






Contig Sequence (11075 bp)

>contig_5772 11075 assembly3_WGSMorex_rbca.fasta
CCGCCCCTCCCCCCCCCCCCCGCTCCCGCCCGCCAGGGGCGGGCGGGCTGGGGGCCGAGG
GGACGGCTAGGGTTTTCCTCCCGCGATTCGAGCGCCGCCGGGCTCCCGCGGGTTCGTGCT
TCCTCCCTCGCCCGCTCGCTCTGCGGAGCGGCGCCTGCGGTTCCGCGTCGCCCTAGAGGG
ATTGGCCGGCCCCTTGCTCCACTCCTCGCTGCCGCGGGAGCAGAGCGCGGCTCCGGGGAG
GAGCTCCGCGGGCTCGATTCGCGGGCGCATTCCGCGGCCTCGCGAGCCTGAAGCTTCGGT
TCGGCCGGCCCCGGGCCCCGGAAAGCGCGGCCTTTTAAGCTTCCCAGCGCCTCCCGCCGG
GTCTCGCTGCGGGTGCCGGAGGGAACCATGGCGGAGAACATCGATCTGGTGCTGGAGTTC
CTCAAGAAGAACCGGTTCGCCAAGGCCGAGGCCGCGCTCCGCGGGGAGCTCAGCGCCACC
AACGGCCAGAGGCGCGCGGCCGAGCCGCCCAAGGAGGAGGACGAGCAGGAGGGCGGCTCC
ACCGCGGGGCCGAGGGGCGCCGCCTCTTCCGTGAGGAGCGCCGACTCGTCGAGGGAGTTC
ATCGTCAAGGAGATTGACGTGGGAGGCCTGGCGAACGGATCTGATGGGAAGAAGGGGCTC
GGGATTGGCCTGCCTCTCGAGAGCAACAACACGGGGGATCTGTATCCGTGGAATTTCAGC
ATTGCCAACAGCACCGTGGAGCAGCTGGCCGAGCTTCTCGTGTCCGAGGAGGTGCCGCGG
CATCGCCGCACATCGGTAGCTGAGAAGAGGGACCGGGGCGTCGGGACCGAGCAGCCTGGT
CCGGTGCTGGAGCAGAAGGTGTCGTTTGGAAGAGGGAAGGGGAAGGTTGACACCGCGGGG
AGAAGTGAGGTCCATGAACCAGGCCATTCGAGTGACAAGAATCTGGTTCCAGAAAAGGAG
GAACCCTTGAATGGCTATGCAGTCAAGACAGTGCTTCCATTTCCTACTGAAATCCCGTCG
TCTAGCTACCATACTACTCACCAGGATGGAAATGACAGGAAAGATACGAAGAAGAGCGTC
AATGCCGATGGTTCTGGAAAACCAGCAAAGAGGCAGCCGCCTGATGAGGGCAACAGGCAG
TATTACTCAGGGAAGTCCCAGAGTAATGTGGATCACGTCGCTGACCGTTGCTTCGACCTG
CAGCTCATGGGAAATAGCCAACGCGAAGAGTTTCCAAAGTTGCCTCCTGTGCGGCTCAAG
TCTGAGGATAAGCTTGTTAACATGAACTGGGAGGAGAAGATCGATCATCATGGATCTGGA
TTCAACGACCCTAGTACTGACCATGTCTTTATGATTGGCTCTTATCTTAATGTTCCCATT
GGGCAGGACATTACATCATCAGGTATGTTGTTTACGATTTGATAGTGAAACTGTAACTTT
TAGATAATCCAGTACATTTAGTCTTCTATGCGTGAACATTACAAAGATTTGAACATTACA
TCGTCACACTTAGGAAGGTGACTACATAGATGCTAGTTCAAGATAATTATTCCATTTTTC
TTTGTGTTGAACTTGAGCGCATGACAATAGAAACCATGAAGTCTCTTACTGGCTTGAATG
ATTTTGTTTAGAGTCCTAAAGAATTTGTAACAATTGTTCACTTTGCTTCTTGGGAAGTAA
TTGTTCTAGAGTCATTGCCATTTTTTCCTTTTTGTGAACTCTACAGCTTTATTTTATGTC
AGTTTGTGCCAAACTTGTTTGTTTATCCTTCTAATTGTCTCTTGAGAGAATAATAACTCT
CCTTGACCTAGAAGTTGTCCAGACCAAATCACCACAATTGTCATCTTCGTTCTGTAGGAC
AGCAAGCTTGAGAATAAGCTAACATAACATGATTTGTATTGTATATGCCTTTTGCTAGGG
AGTAAGGACATCAGCCGAAGCAGGTTGTTTGTTAGGGTTCTTGTGTGAAGAGTTTCATTG
TGATGATAAAAATCACACTTTCTGACATACTCTGCTTTTGTTGAAGTTTCTAGGAAGACA
TTTAACTTGTATACCTGCTATCCAACATACTACATACACACATTTACATAGAACTTTTGT
CAGATCCTATAGTAATCATGCATATTTTGATGGCATTATTACACGAGTAAAATAAGAGAC
CTTTTTTACAATTCAAGGACACCTGCCTTTAAAACATATGTTAAATTTCATATGCCATAC
ATCTATAATTGTGTCTCGTTCCTTCTTTTACAGTTTTACCCAAAGGAATATTAGTGGTCA
CTTCCCATTTGCTTGTTGATCTTATGTGAGATTTTCTAAATTCAAAACTCTGTGTTCTGG
AAATTTTGATGTTTAATAGTATCAATATGCAAACTGAATCTTTGATAATAAGTCTTTTTC
TTTGCATTTGAAGGGCACTTGTCTCTTAGAGCATATGCTCTTGTAAATTAGTTTGGAGGT
GCTCTCAGATGCGATACTTAAAAAATCCATGTTTGTTTTTCTTAAAGGGATATTTACCGA
TCATTTGACATTTTCATGTAGATCTTATGTGAGCTAAAAAAAACCAAGGACTCAATCTTA
CGTGAAAATTTCATGTTTGATAATCTGGATATCCAAATTTGCAACAGTGAATTTTTTTTT
TGCTCTTAAGATTAAAATATGGCAACTATATAGGAGTGTTTTTCCATGCTTCTGAGCTCT
AGTGCTCTACTGTATGGTTTCACTTATCTGAGTTTGGCGAATCTTTTGGCACTTAACGTT
TGACCTGCATGTTAACACATTCAGGTGGAAGACGCACGGTTGGTAGTAGTTGGTTATCTG
TGAGTCAAGGCATTGCAGAGGATACTCCTGACATGGCTTTTGATACAATGGGTGATGATT
TGCCTGAGTATCCAAATGAGTATTGGGACTCTGATGAGTATGACGATGACGACGATGTTG
GCTACACCCGACAACCAATTGAGGACGAAACCTGGTTTCTTGCACATGAGATTGACTATC
CTAGTGACAATGAGAAGGCAACTGGTCACACAAGTGGTGCTGATCGACATGATCGTCCTA
CAAAGGATGATGATGACGACCAATCATTTGTTGAAGAGGATTCTTACATATCTGGTGAGC
AGTATTTTCATGGGAAGAACATCGCACCGATAGGTACTTCGGAGCGGCCAATAGGACATG
GGATTCCTGATAATGATATGATAGCTCAGTATGATGGTCAACTTTTGGATTCAGAAGAGC
TAAATTTGATGCATTCTGAACCAGTATGGCAGGGTTTTGTGTCACAGAATAGTGAACTAG
GCATGTTAGGAAATGGGAAATTCCTTAATGATTCTGCACGACCTCATCCTGATGACCCTT
TTGTTGAGGATGATCAGCATGGTTCAGTCAGGTCAATTGGCGTTGGTATAAGCAGTGATG
CTGCTGACATTGGCAGTGAGGTGCGTGAAAGTCTGATTGGAGGAAGCAGTGAAGGAGACA
TAGAATACTTCAACGAAGGTAATCTGAGTGTTAGTGGAAAGAGACACTCTCAGCAAGAAA
CAGAAAAGAAAAAGGTTAATGCGAATGGAGCAAAACAGGACCAAATAAACTATGATATCC
AAAAGGGAAATATGCCACCAGGAGCAGCTTATGGTGATGGTGGATTTTCTTTTCCGCCAC
CACTTCATTCTGGAAAAAACACCGAATCAGATGTTAAGTCTTCATGGTCAAAGAAGGATG
ATTATTCAATCAATGATCCCGATGACTGTCAAAATGGTACGGTATCGGATGATACACTTG
CCACATGGAAGAAAAGGAACAGTGTCTCTTCCCTAAGGAGCTCTCGAGATGAAATGACTT
CTGATGTTGTTAGATCAAGAAACTCGAGCGCATCGTCTGCTCTGAATAATACTTACGATG
AAGTGGAGGAAACAATGAATGCTCGTCATCAGAAACTAGATGATGCACAAGAAGAGGAGA
CAGGCACCACGTTAGATGACGAGGAAGCAGCAGCATTGCAAGAACAAGTAAGGCAGATAA
AGGCCCAGGAGGAAGAATTTGAAACTTTCAATCTGAAGATTGTGCATAGGAAAAATAGGT
ACCTTTTTTAGTCCTTGATTCCTTGATCGCTCTCTTTGATTCCTGATTTGGGTTGAGGCT
TAAAAGGAAATGGACAGGCCTAGTTATCTATTTATGCTTGGTGTTTACGTTTAGATTGGA
ACGATATCTATTTGTTTCCGTGTAGAGATGCTTGTTTACTCTGACATTTATCTTCTGTAA
ACGTTAAAACAGAACTGGTTTCGAAGAAGACAAAAATTTCCATGTTGTTCTCAATTCTGT
TATTGCTGGTCGTTACCATGTCACGGAGTATTTGGGATCAGCAGCGTTCAGCAAAGCTAT
CCAGGCACATGATTTACACACAGGAATGGATGTGTGTGTTAAAATCATTAAGAACAACAA
AGATTTTTTCGACCAGAGCCTTGATGAGATCAAGCTTCTGAAATATGTGAACAAGCATGA
CCCTGCTGACAAGTACCACCTTTTGCGTCTATATGATTACTTCTACTATCGGGTAAGTAT
GAGTTTTTTTAGCTTTTCCTGATCCCTTGCTCTTATTTAGTTCCCATGGAGCATATGCTT
TTTTCAAGTTTAGGGTTGAGATATATGTTCCCATTGATTTTACTGAAGCATTTTCCTTCA
ATTTTTTATTATGGTAAATATGGGATCCTGATTATCTGCTGTTAATGTTAATTTTATTGA
TACATTAGTTCATTTGTTTGACAGTTTTTCTCCTTCTCTTTATAAACATTTCCTATCCAG
TTATCTTGGCATTGATTTCTTATGTAGACTAACTTTTATAGTTCATACGCATTAAGGCAG
GGTTGGAGATCATCATGCCATTTGATCCATTAGAATTGCCATATTTGATGTTTTTTTCTT
TCAATTATTCACATTTGCCAAATGATCTAATCCTTTCTCCTCAGTCCATTGCATCTTGTA
ATGAAATTTGCCATGTTTGGTATTGCACTTGTTTCAAACACAATTGGAGGATTATTTGTT
CATACTATATGTAGGTTTTGTTCATACTATATGAAGGTCTAGGAGTTTAGTTTATTTTGT
AAATAAAAAGTCTTCGAGATTCTTTGTCAAGTCAATTCATTAGGGCGTCCTGTGACGAAG
TCAGCCCTGTTTTCTGTAGAACTTAGTTGAAGTATTTGTTTGCAGGAACATTTGTTGATA
GTTTGTGAACTTCTGAAGGCAAATTTGTATGAATTTCAAAAGTTTAACAGAGAATCAGGA
GGCGAGGTTTACTTTACGATGCCAAGATTACAGGTATTATTAAACTTTATCACCTATTAA
TGCTGATTCAGTGTTCTCATTAAGCAATTGGACATGAATCAACTTTTCATGCTGATAACT
GATCTATTTCTTTGATGGATCCGTTTTGCAGTCGATAGCCATTCAGTGTCTGGAGTCACT
GCAGTTTCTGCATGGACTTGGTCTTATTCATTGTGATCTGAAGCCAGAGAACATATTGGT
AAAGAGCTATAGTAGATGTGAAATTAAGGTCATTGACCTTGGCAGTAGCTGTTTTGAGAC
CGACCATCTATGCTCATACGTTCAATCGCGATCTTACCGTGCACCTGAGGTTATACTGGG
CCTACCTTATGACAAAAAGATAGATATATGGTCACTTGGATGTATTCTAGCAGAACTTTG
CACTGGGAATGTAAGTGGCTATTGCATGCTGATGATTACGTTCTTAGCAGTTACATTTAT
TGTCCTTCTGTGACTGTTTCTGTAACAATCTTTTAGCGCCCTATACTAGAAAAAGCCTGT
AATGAAAACACACAGTTTATAATCAGATAAAAGGAGAACTTTTCTTTCAGCGTATATTTA
TTTCTTTAATGTCTTGACCATAGTAAGGTACATACCCGGTGTTCTGTGCTGTAAGTGCTA
ACAGTACTAGTATGGAAATAAGGCATTTAGGAAGTATATACCTCATTAACAGAAGCTATT
TTTATTTTTATATCTCCTGTCTCTATGTTATGTGTTTAGGTGTCAACAATAAAATACATT
TAGTGTTTCTTCTTCTTACATGTAAGAATATGTTAGCTAATCTTTCTGTTGATCTATGCT
CTTCAGGTCCTTTTTCAAAACGATTCTCCTGCGACATTACTTGCACGTGTGATGGGCATC
ATTGGATCCATAGAACAAGCTATGCTTGCACAGGGGCGTGATACTTATAAATACTTCACA
AAGAATCACATGTTGTATGAAAGAAATCAGGTTTGAACTCTTCAGCCATATTTCTTTTCC
ACTCAGGAACACCTGATTCAGGTTCCTCCTTGAAATGGTATCATTTCTAAAATAAGTCGC
AATTGATTGTGTTTCAGGAAAGCAGCAGGCTAGAATACTTGATTCCGAAGAAGACATCAT
TGCGGCACCGCTTGCCCATGGCCGATCAAGGTTTCATCGAGTTTGTTTCATACCTTCTCG
AGGTGAATCCGAAGAAGCGCCCAAGCGCCTTGGAAGCATTGAAACACCCGTGGCTTTCTT
TTCCTTACGAGCCAATATCGTCATGACACGGCTGCTGCTACTGGATCGTCATGTTTGCAC
CATATCGAATGCCTTAAACCTCTGTTCTGGCACCTGAAGCAAACACCATGAAGTTTTGAT
GGAAGATCAAGATGATGAAATCTGTTGTAGCATGGGCCACCCCACGGAAACAAACGTTCC
GAGTTCAAACATTCAAGCGCGATGTTGATTCAAGCCAATTGCTGGGATGGTGGTCTTTTG
CTACCCTGTGTACTAAAAATGCCCTGTGTTGTGATGTAATATAACTCTGGGTTTTGTCTA
TTGTCTGGCTGGCCCCAATATAACAGGCCATTTGGTTAGAGGTACATTTTGAAACCCCAT
TTTTCGTCTAGGAATAGGGCTGTCATGTTGTACATGGTGTGATTATTATTGTCCAACCTT
GTGGTGCCATGCTGCGCACGTCTATTTTTATGGTTCTAAGTTATAACCCAAGGTTCTCTT
CTGTACACATGCTGTTTTTAGTCTTAGGATTGGGTGAAAATTCATCTTTACTGTTCCTGT
GCTACTCTTTTTTAAACATGCTTGGAATTTGCAGAAAATCGGGCTGCGGCCAGTTGCTGT
GGAACTCATGTGAAGTTTTTATTTGACTTTTTGAAGTTCACTTTTGACACTTTAGTTCTT
CGTAGTCATGTCATATTTTTTTTATTGTTAGATTCGTATTTGAAAGGAGTTCTCAATGAT
ATTATTTTTGTTACATAAACATATATTTTGCGAGGGGGTGGGACTATAAACCCGGACAGA
GTTGTTAATCTTACCTGCACCATTCAGTTTCCATCATCTGCAGCATACATACAGAGAGAG
CGTGATTTGTACTGGCATTGATATGTAGGGACGTGATCTGTATGGCATTGATATATGGGC
ACGTGAATAGTTTGAGCTTATTTCGAACTCAGAAGAACAAACACGAGGTTTGTCTGGGAT
TCGACACGCAGAAATTGTGTAGGGTACAGTTCTGATGCTCCAGACTTCTGCTTGATTAAA
CCGAGAATAGAAAAGATTGCATTGAACTTGCCGAACGGACATGCAGGGCTACATTTGGCT
GCTCAGTTTTTCTTGGAGATTTGGCAGCTCAAGTCACCACATTCACTTCTTTTCCCCTGT
ACATCTCACAAAATAACATCCCAAAACGTTTTCTCGTTCTGTCTCGGGAAAACTTGTTTT
TGGGACGTGACACCCCGGACAAATTTTGGGCTTGTTTGAACTAACACACATGTTTAGCGT
TCTGAACTGCTGATGCTCCAAAGTTGTTTTTAAGGTGAAGATGACCATTCTCGAATGAAT
GAAAACAAGGTTTTACAAGGGGATCAACAGGAGCAATCAAGCAAGTAATAGAAACAAGGG
ATAAGAAGCAAATACAAAAACAACTAACTCTCACGCCATGCGGACCCCCATTAGAAATTA
CAACGCGATGGTTGCACAACAGCTGATGCTCCAAAGTAGTTTTGAAGGTCAACACCTCCT
AATTCGATAGAAAAGTGATGATTCCCCAATGAAAACGATGTTCCACAAGGGGATCATAAG
GAGTAACCAAGCAGTGAATAGTAACAAAGGAAGACCAACATCAACTACTGAAACAATATA
AACAACAAAATCGGTTCATACTAAACAAGTAACGCCAGGGATGTTGGTTAGATCATTGCG
TTAAAATCAAGGGAATTAACTCAATGTGCAAACCTCAAATGTAGGAAAAGTAAGTGGCCT
ATATTGTACCTTGGTGAATTGATTCGTCGCTGATGCTATCAGACTTTTATATCATTTTCA
TGAGCATTTTGAACCGGGGCATGACATATTTAATGACAACCCAAACATCGTAGCAATACA
TAGACATCTTGATGATTTAAGCATGCCACATTTCAGTATGCACATCCCAGAAAGGATTTA
GCAGAGTATATCTAATTACTAAACCACTATACTTAATTGCAGGAAACAATGAAAATCAAA
TAAATTAGTTCAAACCAAAAGAACTTAGTAAGAGCAACAATTTCATTTGATCTACCTTTG
TGAAGCAAAAACGACATTATACTGGGATATATTAGGCAATAAGGCGCAAAAAAGTTCAAG
GTCAATATATAATACAAACAAAAAAGGGTCATTTTGAACTTTGTAAGAGTAAACATTGTA
TTGCTGCATCGGGCAAGAAACCAACAAAAATAAAATAAAACACACCAAATTTAATACTTC
CAGATGATTGCGCTTTAAAGGATCAAAATGAGCATGGGAAACTGAAATACTCGATGTTGA
CAATAGAATATACTGGATGTTAGCAATGGAACATAGTGGAAGTAGATCTCATAGTCGCCA
AACAGGACGGTCTAGGGTCGGCCCATAGGCCGAACAAAGAGGGTGACTATCCTGGGACCC
AAAGGAGGATAGCCCAAATATTAAAGATGGTCATGACTATATTATTATCGATTAAGTTTC
AAATATTATTACATGTGTAAAATGAAATCCTAAGTTTGTAGGAGAAAACATACACCACGT
CAAAGTAACAACTAGTCTCTCTCTCTCTCATAGACGTCCTGTAGGTTGTACTTGAACCTA
TGCAAACTAGATTTTTACATTTAATCCATTCATAATTTTTTATCTTAGAAACTAAAAAGA
GCTCTTGTATATATAGAAGATGAAATTAAACGTTGAGACGACCATACCAAATAAGCAAAT
TGTATCTAAACTTAACTTAATCGGTGATATATTTATGTTATCAGTGATAGTGATCTATGA
TATTCCAGTACCATGCATATATTGAACTTTTTATTGAATCTAACTTGCGACACATTTGCA
AACAGTACAATTTATACTCTACAAGGTTCAACAAATATGCACACTCAATAGTACACTAGA
AACCACTATTAAGATATTATTTGGATTTATTATTTAGAAACCTCTAATATGATATTTAAT
GAAAGTAAACTATAGATGACCATATGCACTTACATACAGATATATACGTGTGCACCGTAT
AATTTAGAAATTTTTAAAAAATATTTCAAAGATAATTTATGGTACTACACTTAGTTCAAA
TTTATCACAAATAAAGTGATAAGTGATATACATTGCAACTGATAACAAATAACATTGGTT
AACTATACCACCTAAATTATGTGGTTAATTATACCAGCTAAATAATATAATGTATACTCT
TATGATAATAAAAATAATTAAATAAACAAGTAAAAACATTTGATATAAACTATTTATTTG
ATTTTGTCCTGTCTCCCAGATTTTGTATAAAACTACTCCCTCCGTTCTATAACATAAAAG
CGTTTTTATATAAATATAATATTAAAAATATTTTTATATTATGAGGCAAAGGAAATACTT
ACTAAATGAGAGTAATGCTCCTGTTTTCGGATTAGTAGTACCGTCGGCAGCAGGCTAGCA
ACATAGTGGATTCACATTCACACATAGATAGGCTATCCAGTAGGAGGACTACTATAGTAC
AGTAACACACCAACCAGGAGCTAATTTAGGGATAATATCCAACAGTTGCCAAGGTCTGAT
GCTCCCTTGGGGGTGCGGCTTGGAGCGAGGTGGTGGCGGCCAGAGGCAAAGAGCATCCAG
CCCTGTCTCCTGTTGCAGTTTCCTGTCATAGATGTGGCATGACACCATGACAGCCATCGC
GTAGCAGCCGTCTACGCGGCTGCGCACTACGAAGGGCTGTGCTGTGAGTGTTGGGGTGCA
GTACCACGAAGACAGGCGGGGCACCACAACAAGCGAACGACGGATGGAGTCGTAGACGAT
GAGCCGGTTGGATTCTTCCCCATCTTGAAACTGTTCTGCCACGACGACGACCCCGTCGTC
GTCCATGGCCTCGATGAAGGCTATTGGCTCCGGGCGAAAAGGCACGGCATCTTTCCGCTT
GAAGTATATGCCCAACGCAGACAGGGTGGGGGGGACGACGCGCGCGAGCAGAATGATTGA
TTTGGCCAAATCCTCGTCGGACTTGTCGACAGCATAGGCGGATGAGCACTTGATAGCCCA
CCAAAAGGGATCGCGGCCGTAAGCATCTGCTCGCAGGTCAAAAACTTCTGCCCGCATGAA
GATATTGTGGGTAGACCACGCGGGGGGGCTAGGTGGCCTGGATTCAGGGGAAAGAATGCG
GGAGATTCGGAGGTGGAAGCCATGGCACGATTTCTCTGGCGTTCTAGGGTTCGAGAAGGG
AGAAGGGGATCGATTCGTTTTTCGTTTTTCCTTTCGGCGCGATACAAAATACTCCCTCTG
TCCCAAAATAACTGTCTTAACTTTGTAGAGATTTCTGGGTAATTTCATATGGTGGCTTTC
AACACAATTAAATGTCAACTTTCAACTAAGAAAAATGAACTATCTATAAGTTTGGCTTCG
CGCCGTTTACGTCCAACTTCGCAAGCATACGTCGCCTACGACGCGATGCTCTTGCTCGCC
TTCGGCTCGTTGGGTTTTCATAAACACCATGAAGGGGGGCATAAGACGAAGTGTGTGCTG
GTCATGCAACGCGCTGGTCGTGTAACGCGTTTACG