morexGenes - Barley RNA-seq Database

Contig contig_5767
Source Contig contig_5767
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5767 (5774 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_5767

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70246	4	3470 bp	MLOC_70246.1	Available	Available	LOC_Os07g48700.1, FRAME:+3, EVALUE:0.0, 13107.m05220 protein expressed protein
CDS Structure of MLOC_70246

Contig Sequence (5774 bp)

>contig_5767 5774 assembly3_WGSMorex_rbca.fasta
GAGCGCCCCCACCCCGCGCGCCGCCGCCCGTCCGACCACCGCCACCAGCAGCGCGGCCAC
GGGCGGCAGCACGGCGGCCAGCAGCAGCGCGCACACGCTCGCCATCGTCTCCTGTATCTT
CTCTCCCTCTTCTCGGGTGTCCACCCACGCGCTCTGCGTGTCGCCTCGTCGCTCTACGCG
TGCCTGCGGCAATGGCCAGAGTTCGCTAGCTAGGCTCGTGAGTCATGATATAAGTAGCTA
GAGGCCGAGGGCGCGCGTGCAGCACCGAGACATGGGAGCGTCGATTTGACTTTAGGTCGA
TCAACCGGGCGTGACACGACGCCGGCATTCATTCAATCCGGGCTCCTCTCATTGACAAGG
ACGTACGCCAGCCCAAGCCCAAAGAGAAAAGATACTAATGCTCTACGTATTGGTCAGGCC
TCGAGTGATCATGCGCTTCAATTTCAATGCAATTGATTTTTCAAAGATATTTTCCATGTG
GTGATGGATTGATACACAGATCGTATTATCCACAACAGTGAAGCTGCTGCTCACAATCAC
GCATGCCAGGTGCAAGTTGCGTCTAGTACCTCTCAATCGCAAACGCAGGATGTAAATGCA
GTCCAAGCATGTAACTTTCAGTCAGCGAGGCATTGACCTCCAGTGGGCAATAAATCGTGA
CATATGGAGAGTTTACAGCCAGCCAAGTGAACAAGAAAAAACTGACCAAGAATTAAGGGA
TGATAGGCACTAGAACTGTTATACCGAAGTTTTCATACAGTCGGTGACAGGTGTGTGCAT
TGCTTCACCAAAGGTGCAACGTAGCGTTCAGCTGGAAAACATGCCATGTAGACACAATGA
CAAGCGAACAAGAAGAAATCGAAAACCAAAGAAAGGGACGATCCATTCACAGTATCATCG
CCACATCACAGATTCATAGTACTACATAAACTTAACTAGGCGCGGCAAGGCCATCACAGG
TTGTGATGTACGCATCATCGCTTTACAGAAGATACAGTAAACTTCGGTCGCGAAAACATA
TCACATCATCGTTTTTTCGAACCATGTAGGGGGCCCGCACGGGTTCGAAAAATAGACAAT
GTGATAAAAGCATATGAACACAGCCTAGGCGCAGGCCATCTATATCTCTCTCCATAATAA
CAGGTATAAAAGCTATATATGTCCCCAAGGGCTCTGCTGTAATAAACCCCTTTGCTTTCT
TCTTTCCTCTGTGCATGCAAACCTTTCACTCCATGCCGAACTGCTTCATCGTCCTGGGGC
TGCAGATGAAGTCGAGCGGCGGTTTGTAGACGTTGTCCTGTAGGATCGAGATCTGCCCCT
CCTTGACAAGGATGTCCTCTTCGAGGGATTCGATCCTCTTCTTCAGCGACGCGACCTCGT
TCTGCATCATGCTGGTGGTTTTGCGGAGCTGCTTCGCTTCCTGCCATGACAGGTCCCTTT
CGTCGGTCACGATTTTCAGCTGTCCTCTAAGTGCGCTTAGCTCCTTGGCAGATTCTTGGA
AATCCTGCTGGATCTGGCCGATGGACTCGTCTTTCTTCGAACCCTGTTAGTTGCAAAAGA
ATATGTAAGCAAAAAATATACGGCCTGCAGATGCTCAAGCTCTTCAACATCCATCAGTAA
TACATAAGATATTTTCCAAATCCACCGTCTACCAGGCAAAAGGTGAGGTACTGGCTTGTT
AGGGAATATATATAGGGATAGGATGTTACCTGAAGCTCCAAATGTTTAGCCTTGTGGGTG
ATGCAGGATAGTTCATCTTGGACTCTCTGGACCTCATTCCTCATGACATCTTGGATACGA
AGCAAAGATGCCACATCTGACCGCAACTGTTCAATGTCAAGTTCCTTTGACAAAAGTGCC
TCCTTCAGTACTCTATTTAGAAGAGCCTCTTCTTTAAGCTTGAATTCAAAATTACCCTTC
ATTAAGAACAAAAAATAGGAATATTAGATCGATGATACTGAAACATTTTGAGTTCTCATA
AAAGTTGAAGCAGCTTCTGATTTGGCTGGTCTCACTGGAGATATCATATAAAAAACTGAA
GTCATGGTTTCCTTATAAAAACATTCTAAAGAGTTACTCGATAAAAAAATTATAAGGACA
TGTGACTCTCGAAATCAATCCATGGTTCTTGTTTTATCCAGACACAGAAAGAAACACATC
AGCTTAACGAGAAAAAAGTCTCATGGCGTGCTTTCGTACCAGATATCATAACATTTCAAG
TTTTCGTAAAAGTTTAAGCAGCTACTGATTTGGCTCATCGCATTAGAGATGTCATATGAA
AAATCACAAGCCGCGGTTTCCTTATAAAAACAATCTTAATAGTTGCTCAGAGAAAAACAT
TACAATGACATGTGACCCTCGAAATCAATCCATGGTTCTAATCCCAACAGAGAAAGAAAC
ACGGCATATAATGAAAAATAAGTTCTCACTGGATGTGTGCTTCCATACCTCATCCGCCTG
CTCCGTGACAGGACTACCTCCAACCGCAGCCTCTCCAGATTTTTCTTCCAAATTATGCTT
TTCGGTGAGCACAGCACTGGTTGCCCGCAAGCTTCGTTTCAGATTCTCGATTCCTCCTTT
GATGCTCTGGAACTCCAGTGTGTAATCTAATGCATCAATATCTCTGTCATGTTCACTTTC
ATGCCTCCTGCATTTCGCGAGGTCCAACAATTTGGTGCAGAGTTGGCTACTCTTATCAAG
CAACGACAATCCTTGTGTCTGCAAGTTGTCCACTTTGGCCTGAAGCGCCTGGCCAAGACG
AATTGAGGAAATGCTTGATCTATTTTCAGTGCTTTGTAGACGATTTAAGAGTGCAATGTT
CTCTTGCCTAAGAGATTCTACTTCAAGACGACAAGATTGAACTTCACCTCTCAACTTCTG
CTCCACTCCTGACAATCTGATGAGTTCCATCTGCATCCTATTCTTTCTCTCGCTGCTGGA
CCAAACAGATTCCTTATCCAGATCAGCACTGAATCCCTGTCTCAAGCCAGCAATTGTTTT
TTCTTGTTCATTGCATATTGTCTGTACCCTTGCAACCACTTGGTGCAATGCCTTGTTATC
ACTCTCCTTATCTTTCAAGAATCCCCTGATATGTTCCTTCTCCTCTGCAGCCTTAGAAAA
TTGAGCATGCAACTCTATTGAAGAATTGTGGAGATTGTTGTGCTCATTTTTTACTATCTC
GAGCTCATCAGTTAATTTTATGTTCTGCATTTCCAAACTTGCAACCTTATCAGATGCATC
AACTTTGTATGCTTCAAGAGAAGTGAGTTCTCTCTGAAATGAGACATTTTTCTCAGCAAG
TTCTCTCACCCGTTCACGCAGTCTCTCTTCTTCAGATTGAAATCTCAACAGCCTGGCTGA
CCAATCGTTTGACCTTCTGTCAATCTCTCTCTCCAAAGTACTCTGTACTTCAGTCTTCTC
CTTCTCCAGCCTCCGAGCTCTGATCTCAAGTTCTTTCACTGATTGTTTGTACTTCTCTTT
GGCATTAAACCTTTCTGCAAGGCGTGCCTTAATCTGTGAAGACAATTCATCTGCTAGCTG
TTTCCTGTCTTCAGTCAAACACTGAATCAATTGGAACATTTCATTTGAGCTTAATCGCTT
ATATCTGGACATGTTAAGCTGGTGACTGTCTCCAGGAGTTATAAACCTCTCTTCAACTTC
TTTTGCCCTTTGAAGCAACTTATCATCAGTTTCTTGCCCTTCTGGGGCGAAATCCAAGTC
ATGAACATGAAAATATTGGGGGGCATCATGAATAACTTTTGAAGGTTGCATATCTTGGAA
ATCCTCATAGATATCTTCAACAGATGGAATACTTTCTGATCTGTAATCTTCTACATGTGG
AAACCTCCCAAAATCATCCAGAACACTTGCATGGTTTTTACTTCCATAGGCATCCTTCGC
ATCCACATTTGGGTAGGTCTCAATGTTCTCTTTCATTGATTTTTGCAAAGATGGCATTGA
ATAATGGGGTCGAGGCGGGCGTCTTGAATTCGAAACCACAGATCTAGTAGGAGAGTTCTG
CCTCAGCTTCTCATTTTGGATGGAAACTTCCTGCTCCCCATCAATGTATCGGTCTAGCAC
TTCATTCTTGTTCAATAAACTGCCTAGTCTCGTAGACCTGCATCGTAGGGCAACAGGAGA
GGTAGGAGGAGAGTGACCTGTTGAGCATGAATAGCATCTCGAACGAGGAGAATCAGTTTC
CAGGACTGAACATGCTTTTGGAACCTTTAATGAGGATTCTCTTAAGACTGGATACCTTTC
TGGTGACCAGGCGTAGTGACTGCAAGTAAATAATCATAATGAGTTAGGATGAACATTTTT
TATCAGACAAATGATAAAGATAACCAGAGAACTGTTATAGATAAAATGGAGATCAAACAG
AAGCCAAATCTTTTAACTGTGAAGTAAAGATCGCAAAACAAAGGGGCATGAGGCTATATC
TACTAGTACAAGCAACGGAGTAAAAAAGCTGTATGTTCACTGAAACTGAACAATTTGTAA
GAAGGGCCTCTGCCAAATATTTAGAGTGATAGTTCATGAGCTAAAATCAGTAAACTTGAT
AGATTCACATAACGAACAATCAAACATATTCTGAGGAGTTTTTATTTTCCATTTTCTTCT
CTTTACTACTAGCATGGATCAACAAGGCCACGGGGTGTCCAAAAACTAGTTGAATCACGG
TACAACAGCCTAGATATATGGCAGTACTGATAACAATCAAGTATTATGTAATCAGAAAAA
ACTTACTTGACATCTTCGGCGTGGCGAGGCACATCAGATTCATCATAGAAAGAACCAGGA
ACATCACCCGAGAAGCTAAAGCTGCGTTCCTTGAGGGCACTGTTGCCGGCAGCGGACGAG
AACGACATGCACCTCCTGAGCTGCTTCGGATTGGCTGGTTCCTCATTGTTCAGCCTTCCG
CGGCGGCTTCTCGACCTGGACATCCTGGCGCCGTGGTCATGGGACCTGGAGCTAGAGTTG
CAGCTACCCTCGCCTTCCTCCAGCGCCTTCTTACCCCTGTTCTTGCTCTTGGCATCGTCG
CCTGGCGGAGTCCCGTCGCCATCCCCGTCCTTCGGCGTGGGGGACCCGAAGAAGAAGAAC
CTTCTCATCTTTTAACGGGGCCGTTGGGATTTGAAAAATCGGAGTCCCGCCGACGAGCCC
CTGCATGGATCGGATCTTGCTCAGTAAAGAGGCAAACATGAAAATTAGTCTGACAGCAAG
TTGACCTGCTGACATAAAAACACTGGTTAATCCGCGAACAAATGGTAGAGAAGCCAGACG
CTGCACCGAATCATTTTTGTTTTCTTCTTCGGGAAGTGGACAGGAACGAATCAACAGGGG
AGTTCGGAACGAGGCACCAGAGGATGTTAATCCGCGAGAGATCTCTAACGGCAACTGAGT
TGCAGGAACTAGGCGCGCCCACTGCCGGAAACCTAACGGGCGTGCCCTCGCCGGCCGCCG
CATCTAGCGAGGCCGGGCCAGGAAATCGGTCGAACAGGTCGCGTACACGCACGAGCAGCA
GAGCAGGAACCGAGCCAAGAACCCCCCGGGATTCGGACCCTCGGAGCAGCGAGGCACCAA
ACCCAGCCCGTAATCCACGAACCGGGAAGGAAGGGGACTGACCGGGGCAAGAAACGGGGC
AGGCGGCGAGAGGAGGAGCGGGGTGGGGGGCAGGACGCGCACCTGCGAGAAGGACGGACC
GGAGGGGAGGAGCGGAGGGCGGCCTGCCTGCCTGCGGCGCCGCCAACGGTCGGGAAACCC
TCGGCCGGCGCGCT