Contig Data
morexGenes
Links



Map Locations of contig_57655 (7237 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_57655

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70236 2 1250 bp MLOC_70236.1 Available Available None
MLOC_70235 2 4356 bp MLOC_70235.2 Available Available LOC_Os01g04070.1, FRAME:-2, EVALUE:0.0, 13101.m00360 protein verticillium wilt disease resistance protein, putative, expressed
MLOC_70233 1 850 bp MLOC_70233.1 Available Available None
MLOC_70234 1 424 bp None Available Available None





CDS Structure of MLOC_70236






CDS Structure of MLOC_70235






CDS Structure of MLOC_70233






CDS Structure of MLOC_70234






Contig Sequence (7237 bp)

>contig_57655 7237 assembly3_WGSMorex_rbca.fasta
CGGCGGCGCGGGGAGCAGATCAGGGGCTGCTCGTGGGTGCGGGAGATGAAGGCGGCTGGG
GGGATCGCGGGTTTAATTATAGAATAGTACAAGGGCGTTTTCGCAAAAACGCTGCGACGT
ACGGCAGAAGGCGTCGGTGCTTTATTAGTAGGGACAGATAGAGTAGGCCTTCTGATGGGC
TGCAGATCGAGTGTTAACAGGCCCTTACGTATCCCTGATGATGTATCCCTACGTGTCCCA
GCCGTATCCGCGCGTATCCCCGTCTTGGTGCAGTATCCTGCACCGATACGCCACTTCTGT
GACGTATCCCTGCAACATAGGATGGACGTGGACTCCCTGAGCTACCCGCTGAACCCGAAC
GCGAAGTCGAACGTGGCGGCGTCGCCCTGCTCTTCGGCGGCGTAGCTGCTCGCCCTGGAC
GGGCTCGTGGGGGCGTTGGAGAAGAAATAGCAGTAGCTGGGTAGAGGGCTGCCGCCGCTG
CCCATGGCAGCCACGGTTTTGGGCTGCACGGCTGCACGGAGCGCTTGGATAAGATCCATT
TCTGTTCCAGATCGAAACGGAAATGACCGCGTTTAACAGTCCAACCTGACAAGTAGGCCC
CATCCCGGTCAAAGCCGTCATTGACTGTGCCACATCAGCATTGACCGGAGAAAAACCAGC
CGAGGCGGTGTTTTGTCTGGTTAGGTTTTGTTCGGGGGCTAGAAGGAACCAAAAAATAGA
TCAGGGGGTAAAGTGAACNNNNNNNTTTGTTCAGGGGAGTAAAATGGACTTTTTTCAAAC
ATATACATGATCACACTTTAAACTGAAGATAACAACAAACAGATACGGGAGAGAGATTAC
AAGATGTCCAGCCATCTAGCCATTAGCAGAGGCTTAATACATGAAAGCACAGCACAAAAT
ATACTAGATAAAAGCCGACACTTACAATACTTCAGAAGCAACAACTGCAGCAGACGGATA
AGCTCTCCTGCAGGACAGCAAGCTTGCACCTGGAAACAGACTTCGAAATTCAGATCAAGT
CCTCAGAGCTCTTGCCAACTTAATAAACCATTTGCCGATTTGACCCCATGTCATGAGAAT
GGCAGCTGCAAATCCAACACCCAAGCCTAGCCCGACGAAGAGAAACAGGATGACGTCCAC
ATCAGATGACTTCTCCACGAGTGCCATGCTTGGAGGAGTAAAATAAACGCTGCAGGGTTT
GGAGAATGGCGGTCCACACAACCCCAAATTCCCTTCGAATGAATTACTTTCAAATGTGAG
GAACTGGCGTGACTGCGGTATCTTCCCCACCAACCGGTTGTCGGACAAGTTCAGATTGGC
CAGAAAGGTGAGATTTGTGAGTTCCTGTGGAATCTCCCCAGAAAGTTGGTTGCAAGACAG
GTCTAGTGACTCCATATTAGTCACCCTACCAAGCTGGGTTGGAATTTTTCCCGTGAATCC
ATTGTGTGACATGTTCAGTACACGTAGTGAAACAAGTCGTCCAACTGACTCAGGAATATT
ACCTTCCAATCTATTATTTGAAAGATCAATTGTTGTTAAAGTGGTCAGGATCCTTCCAAA
TGTCACGTCAGACCCCTTGTAACTGATCTCGGTAGAATCTTGGTAGTATTCCACCATACC
TTCTAAGTTTGTAGCACGGACAGTATCTCCAGAACCATTGAAGTTGGTCATCATTGATTT
CAACTGACCAAACCATTCTGAATTCATTTTGCCGGAGAAGTTGTTCAAGGAAAGATCAAG
AATTTGCAAGCTAGAGAAGTACCCTCCAGATTGGTGGTTCCAAATAACATTATCTATGGA
ACCATAGAATTGGTTAGATCTTAAGATAAGAACATATAGATTGGAAAGCTCCCCTAGCCA
GGATGGGAAAGTATCAACTATTCGATTGTTTCCAATGTCAAGAACCTCCAAATAACTGCA
GTTAGCAAGTCCCCTCGGAAGTTGTCCTTCAATATTGTTGTCATGTAAATCTATTGTCTG
GAAAGCGCATTTGCTTGTAATATTGGATGACAACGTCCCTTCAAAGTGATTCTCTCTCAA
ATTTAATACGGCCCCTTCAGCATTTTCTATCAAACAGGACGGAATCGCCCCCCTAAAGTT
GTTATATGATAGGTCAAGGACATTCAACATGGAATCGCAAATTGTTTCTGGTATATATCC
ATTTATACTATTGTTGGACATACTGAGATAGTTGGTGTGACTGAGATATAGAGTGAAGTT
TGGAAGAACAGAAGAGAAAAAGTTGTGTGAATAATCCAAATATTCTGATGATGAGTTTGG
AATAGGAAGTTTTCCTCGAAGCCTATTAGAACTAAGATCAAATACTTCCAGGTAATCACT
GAATGGAAGAATATATGAAGTATGTTGCATACCGGTGAACATGTTGTGTGAAAGATTTAG
TTGTAAAAGGCTATTGCTCCATCTCTCCCATATCAAATTTGGTATATCCCCAGTGATTTT
GTTGCAAGAAAGGTCTAGATAAACCATTCTGTCAACATGTGTCAAAAAACTAGGAAATTT
GGTTATATTGCAACATGCTAGTCCCAATTCGTCCAGTCCAAACAGAGAGGTAGACAGAGG
GTTATTGCCTTCGTCAATTGTAACAGACAACTTATTATGTGAAAGATCCAAAGCGGTGAG
CTTTCGTAACCTCCCAAATGATGAAAGATCCACTGAATCTACAAAGTTGTTCAAGTTGAT
TTCTAGACCAGACAACTCTGAAAGCTGAAAGAATGACTTGGGAAATTGTCCTGCCAATAA
ATTTCTGCTCAAAACCACGAACTGTAAGCATGAAGAGGGTGCGTCGAACTCTCCTATAGG
ACCAGAAAGTTGGTTTTGACCAAGATTCAAGTAGGATAATTTTGGAAGAGCGAAAAGTGG
TGCCGGAATATGACCTGTAGAATGAGGGGAGGTTATTATTCTCCATGTGCACTTCGAATA
TGGGGTATATATACACAACCGAGAGCTCATGAAAACAATAATAAAAAATTGGCAAGCTTC
TGTTTATCAATGAAATCTTATCATCCAAATTTAAAAATTGGTCTGGCCATCTGCCATTGT
ACCACCTTGACACATTAAAAACATGTGACGGGCCATGAGGTATCCTGTGGTTTCGAGTCA
TAAACACATAAACTAACAAAAATTGTTCCCCTCACTACCACTATGACACACTACCCACTA
CTTCCACCCAGATATGCAGATTTTCCTTAGTCATTCATTTTCTTGTGTCTAACCTTATTC
CCTTTCAGTATGAGGTGGCTTCTTGAGAATGTCAAAAATAATAAAGCGATAATTTGAATT
TCATACTATAATCTTACCGCTCATATGATTATGAAAGAGATCCAGTTTTGTCAGTCGAGT
TAAATTGAGAAGTGAACCTGGTATCCTCCCAGAAATGTTCCCGACTTCAATAGTTAGCTG
TGTCAATTCCTTGAGTTGCCCAATTGCATAAGGTATTGGCCCAGAAAGCTTACTAAACGA
AATAACCATGCTTTTCAAATTAGTGAGGTTCCCAACTGCAGATGGTAAGGCCCCAGTAAA
GTCACAACTGTAGATTGCCAATCTTCTTAAGTTTCTGAGATAGCCAATTGCAGCTGGAAT
TGCTCCGCAATAATCACAATTCACCATAAACAAGCTTCTTAAATTTGTGAGGTTGCCTAT
TGAGGATGTAACTGAACCATGCAATTTGCAGTCGTGCATACCAGATATTTCCAACTTTTG
CAAGTTAATGAGATTGCCAATTTCAGACAGTATGGGCCTAGGGAGGTTGCAATCAAACAT
CCTCAAGCTTCGCAACGCCTTCAGGTTGCCAATGGAGGAAGGCGTTGTCCAAGAGAAGTC
GCACCTATAGATATCCAAGCTCGCCAAGTTTCTGAGGTCTCCAATCCATGAAAAAATCGG
TCCCAAATCATTTTGTGAGTCCATCAAATTAACTTTCAACTGGCATAAAGACCCAAGTAC
ACCGAATGAAGAGAGAAAATCCATCGACAGAAATTTCCCGTCAATAGTTAACTCCCTCAA
CAGCTTCAAATCGCCAGAAGAACTTGGTTTAGCATAGGAGAAGTTGGTCCCCTCTAGCCT
CAGAGTATGTAGAGAACTTGCATGGGGAAAGTTTGGCAAATGCCCCGAGAGATTCGGGTT
TGAGGACAAATCTAGGACCCTTAATTTTTTTAGTTGAAAAAATCTTTGAGGGAACCAACC
CTGAAGATTCATATGTGAAAGCTGAAGCTCACTTAGATTGGGAAAATCTGCAAAGAACTC
TGGAATCGGACCAACATCATTGGATCCAAGGTTGATCGCAACAAGAGATTGGAGGCTTGA
GAGAGAATGATGGATAGGGCCATTCAGCCCGCATCCGCTCAAGCTAAGAACCTGAAGATT
AGGAACATATTTTGCTAGAGCTTTGCCCCAATCTTCACCGCTGCTAGACATTATCTGCAA
TTTATCAAGGTAGAGCTCTCTTAAATTGTTGAGGTTCCCTACTAGGGTCTCAAAATTGGG
CTCCCAAAGATGATTAAAACTGTCAGCTGTAGAGATAGGATCATCGTCACTGAAAACTGT
GTGACTTGAAAGATCCAAGGAGACAAGGTTAACGAGTTTGCTGATGCCAATAGGTATAGG
GCCATCCAAGCCCGAATTGGAGAGGTTGAGATGGGTTAGCGAACTAAGCCTCTCAAATTT
CTGATGCCAATAGATGTTGTAACTGTAGTCCCCCAAAGAGTTCATGCTAAGATCAAGGCG
TTGAAGGGATCTGAGGCTGAAGAGCGCAGGGTCCAAGCCATAACTGTTCAAGCCATGCCC
ACTGAGGTCGAGTACAGTCACAAGACCAGAAGAAGCATCACAGCTAATGCCCTTCCAGAT
ACAGCAATTGGTGCCGTTTTCCCATGACGGAAGGAGAGTGGCGGTGATTGCTGCAGCAGA
AAAGGATTGCTTCAGTTGGAGAAGGGCTGCAGCCTGGTCTTGATGGCACCACAGGGTGAG
GTTACCATTACTGTGAGCTCTGGAGGTGGCCAGTATGGGGAGTTGTACAAGAAAGAGTAG
TAGCGCCCAGTGAATGGAAGCCATTAGTCTAACACGGTACTGAACCTACAGCATGAGCTC
AGATGTCCAAATGGACGTAAGTATATGTAGTGGTACTGCAATAAGACAACAATCAGTGCA
ATGATCCAAAATAATTAGTGCGATGACATATCTTGTTATGGATATTAACTCAAGTTTTTA
GCCCGGTCTTCCTAAAGTCGTCCACTTAATGCAACGGGCCTGGGAAAGCTCCAGTCAATG
CAAGCACGAGTCTTGCTGCGTGCAAGACGGGTTAAACGTAACTGTGACTCTTGTAGAATT
TTCCACTAGACAGGGACCAGAGGTGACCTCAGAGCCATATATTTGACCTTTTCTGGTTTG
GAGGATGGATCTTGTTTCACTGTCAGAGTTGCACTCTATTGGGATTTGAGGGTACCATCG
ACCATGACCATCTAGTGTTGCAGGTTAATTGCAGCACCAGCACGCAACTGCGAGTGAAAA
TATCGTTGATGAATGATAACAATATTCAGTGATGAAGAAAGCTCCAGACTTATATTTTGG
TGTGCCACAGGTCATATGGGAATAGTTACTCTTGAGTCTTCATACGCTTATCACTAGCCA
CACACAATATATGCGCCATCAGATGATTAATTGTGGAGACTGATAGTTTGACCGTTTCCA
AGTCAAGTAGGCACCATCAGATAGTTAATGGTGGCCAAATGACCTGCTACCAAGTTTGTT
CCAGCTAATGGTTATCTTTTATAACAGCTTCCATTGTCTTAAAAGAAAATTAAGTAGGCA
ACTATATACAAGTACCAAGGAGGTGAACTTAACAAAATCTGAACTTGCAGGTTACAAGCC
ATGAATTGAGCCAGGCTTAGTTCCTCAGTATATCTCTAGCTAAGCTAATTCATCTTCAAC
TCGAAGTTGAGTGGACTCTATAGACTGCATGTATTTCTCAGAAATTTTACAGCAGTAAGA
ACAGAAAACTCACCATGGTACCTTATGACGCTAACCAGCTATTTCTAGACATTTCAGAAA
GACTTCTCCAAATCTCGTTGACTCTCCGTCAGATTTTCTGTTCAGGTACGCAACTGCCTC
CCGAGCGCTCTTGGATTTCTTTGCGCAAAGATCATATGAACTAACAGGATCAGAGGATTC
TTCTCTTGAGTTGGAGGCTGCAGTGTGTGTGCTAATATCTGGCAAATAAACTGCAGCCTG
CACGCCACTATCAGTACATTGTTATTTCCAAGTATCTTTTGCGGACGAAAGAAAACTTAT
AACAATACATTTCTAGGGTTACTGAATTGGGGGGAAACAAGGGCACCAAAACTTGTGAGC
TCCAACTATGTTGAATAAACAGGCACTGTTAGTACCAGAAATTCATGAATTTATTCATAA
TAGACACACTATCTCATTCCTATTAGCCGCAGAAAATAAGCAGAACAAAGCAGTAAATCT
ACTGGAAAGCTCCATCTTCCTGCAGTGGAACGAGGATACTTGCACAAGTCACAAGAATGC
CATCAGCGGCTAAAGTGGGGCGAACGGGTCGACGGGAGGAGGCCTTGGAGGAGGGGCGCA
GAGGGGGCCGTCACCGCGCCGAAGGTCGCGGACGCCGGACGGAGAATGACCCGCGGAAGA
GCTCGGCGAGGGCTGCGCTGCGTCCAGCAGCCGCTCGCGAAGGAACCGCTCCATCGCCGG
AGAAGAATGGGTCGCGCTAGAAGCTGCCGTCGCTGGCGTGTCAGCGGGACTGGACGGCGG
GGTGGCCGTGGTGCTCCGGTAACCGGTGACGGTGGCGGCCGCCGCGAGCAAATTGGTTGG
GGTTTCCGAACAAGGTTGGACGGTATGGGCCACAGTGGGCTTGGGCTTGGGCTAGTCCAC
ATGAAAAATAAAAGCTAATGGGCTAATGGTACACAGTGCCAGTGAGTTTTAAGAAGAAGA
AAACTCGGCCACTGCCAAGTCATTTTAAGGTCATGTAAACCCCTGTACCCCTTTAGAGCA
TCTCCAACAGGCGCGCTTCGCGTCGCGTCTAAAAAACAAGTTTGCCGCACGCTGGTCGCC
TGGTTTGGCGCGTCGCGCAGCGCTGGCTCCAGCGGTAGCTTTAAAATACAGCGCGCGCGC
TCCGTTCCAGCAGCGCGCAAAAATGCAGCTCGACGCGGAATTTTTTTCACCTTGGGGGCG
TTTCNTCGAACACGTGGTGCGCGTCGGCCGCCGGCTC