morexGenes - Barley RNA-seq Database

Contig contig_57583

Source Contig contig_57583

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_57583 (6905 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_57583

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70205	1	1203 bp	MLOC_70205.1	Available	Available	LOC_Os01g06530.1, FRAME:+1, EVALUE:8e-89, 13101.m00644 protein retrotransposon protein, putative, unclassified
MLOC_70206	1	396 bp	None	Available	Available	LOC_Os08g22864.2, FRAME:+3, EVALUE:3e-24, 13108.m02337 protein sec8 exocyst complex component specific domain containing protein, expressed

CDS Structure of MLOC_70205

CDS Structure of MLOC_70206

Contig Sequence (6905 bp)

>contig_57583 6905 assembly3_WGSMorex_rbca.fasta
CGAGGCGATGAGGACGACGAACGCGCCTAGTCGCTGACTCTGCGGGTCCACACGCATTTC
GTGCCAAAACCGCTTCCCCTGGCGACCCCGGGCGCCCCCCAGTGCGCCGGGTTCGGCCTG
GGACCGCCGGGGCAATTCGGCCCTAACCGGCGAAAAACAGGCTCCTGGGGGCGTGACTGG
GCCGTTTTTTTCACGCCGCCGACAAAGAAGGGCCTTGGGGGGCTTTTGGGGGGCGTGGCT
GGAGAGGCTCTTAGGGTTTTCTGTACAAGGGGGCAGTACATATATAGGCTGCTAGGTTAC
ATGGGTCATAGCGCGTGCGCACACACACACACTGAAGCATAGTGAAGGCACAAGCCCAAA
AGGCACAGCCCAACACTCCCCCTCAAGAGGGATGATAGATATTTATCATGCCCATCTTGT
CACAAGCAAGACTGCTCTCCCTGGTTCCGAAACCTTTTGTTAGACAATCGGCGACTTGTT
GTCCAGAGCTCACATGAGTTACCTTGATGATTTCTGCATCCAGTTTCTCTTTGATAAAAG
AATCTGTCTATCTCCACATGTTTTGTTCTGTCATGCTGCACTGGATTATTAGCAATGCTG
ATGGCAGATTTGTTGTCACACCACACATTCAGAGGATCTTGTCTGAGCACCTTCAGCTCA
AGCAAAAGGCCCCTTACCCACAACATCCCACTCAGGCCTTGAGAAATTGCCCTATACTCA
GCTTCTGCAGTTAATTTTGACACCATCGGTTGTTTTTTGCTTCTCCATGATACCAAATTT
CGACCACCAAACACACAATAGCCAGAGGTTGATCGTCTATCATCAAGACAGCTAGCCCAA
TCAGCATCACTATAACCGTCAACATTCAAATAGCCATTACTCTTGAACCAGAGCCCCATA
CCAAGGCTGCCCTTAAGATACCTCAGGATTCTATAGACTGCATCAAGGTGTCCACTTCTA
CGATCATGCATATATCTACTTACTACACTTATTGCATATGTAATATCTGGTCTAGTGTGA
CATAAATACAGAAGTTTGCCAACCAATTGTTGATATTTTCCTTTGTTATCTTGTTCACCC
ATCTCTGCTGTCAATTTGTGATTTTGTTCAATGGGAGTTGGGGCTGCTCTTCATTGTCTC
CCGTTATTATGATGTCATCCACATATACCGCAAGAATAGCAATCTGTTCCCAAGCAATTT
TCTCTTCCCAAGCATCAATGCTACTGGTCGCACGACCCTTGTCAAGTCGGTCATCTCTTC
CCAAGCAATTTTCTCGATCACGCCTCTCATGGTGCCGGCTGGCACGCTTAACAACCTCAA
CAAGTTGGAAAGGGCCTTCCTGTGGTCCGGTGCGAACATGACAACGGGTGCTAGCTGCAA
AGTAAATTGGAATTCTGTCTGTAGACCAAAGGAGTATGGGGGTCTAGGGGTTCTCAACAC
CGACAAGATTGCGCGGGCATTACGTCTTCGGTGGCTCTGGTACGAATGGAAAGCGCCTAC
CAAGCCTTGGGTGGATCTTGGCAACCCATGCACGCCGGCTGGTCGCGACTTCTTCTATGC
TTCCACTACAATAATTCTGGGTGACAGGCGCAAGGACGCCGTTCTGGGACTCTCCGTGAC
TGCTGGGGCGGAAACCCAAGGATATTGCACCATTATTTTTTGAGGCCTCCAGGAGGAAGC
ATTGGAAGGTCCGTGATGCTCTTAAGAATCGTGCGTGGATTCTCCAAATAAAACCAATCA
CAACTTTCACTGTGGACCACATCCGCCAATTCTTCACCCTATGGATGCTACTGCATGACC
TTCAACTGGACGAGCAGGCCCATGACGATATCATTTGGAAGCATGCGAATGACAGGATTT
ACTCGTCTGCTTCCGCGTACAAGGCTCAGTTCCTGGGCTTGACTCTTTCTCCCATAGACC
AAATGGTATGGAAGGCGTGGGCACCACCTAAGGTGAAATTCTTCGCCTGGCTAGCCATAC
AAGATCGTATTTGGACGGCCGATCGCTTGGAGAAGCGCGGGTGGGAAAATTGTGGTCTAT
GCCAGCTCTGCAAACGAGAGCAAGAATCGGGGCCACATCTGCTCTTTCAGTGCCTGTACA
CGTTGTGGAGATCCATCATCGACAAGCTGGGACTTCCCAACGTCAATACCGACCAATGGC
ACCTCCATGACTCTGTCATGGACTGGTGGGACAAGAGAACTGACACGCGAAGCCAGAGTT
CGAGTGTGATGACCTCCCTCACCATGCTCATCTCCTGGACCATCTGGAATGAGAGGAACG
CCAGAGTGTTTTGACACAAATTTGCTCCGCCATCGGTCCTCCTCACGGCCATTTTGGAAG
AGGCAAAATTATGGGTAGTTGTTGGTGCCAAGAAGCTAGGGTCTGTAATATTGTACGAGT
AATTGTCATGCCGCGGCGGTGTACTGTAAAACTCTAAACTCTATTCCCTCCTTTTTACTG
GATGAGGCAAATCTTGTGCCTCTGTTTCTAAAAAAAAGAATAGCAATCTGTTGCTTGAAA
TGTTTATAGAAAACAGTATGATCTCCATTGTATTGTTTATACTTTGTACTGCTAACTGCT
AGCCTGAACCTGTCAAACCAAGCCCTCGGTGATTGCTTCAAACAGTAGTGAGACCTTCTC
AATCTACAAACCTTCCCAACAGTCCCAGGTGTAGAAAGTCCAGGAGGAATTTCCATGTAG
ACTTCCTCTTGTAGATCTCCATGTAAGAAGGCATTTTTGACATCAAGTTGGTGTAGTGGC
CATCCAAAGTTAGCTGCACAGGAGATTAGAATCCTCACTGTATTCATACTCGCAACTGGG
GCGAATGTTTCGTCATAATCAATACCGTAGGTTTGGCTGTACCCTCTAGCTCCTAGTCTT
GCCTTGTATCGCTCAACCTTACCCTCAGGATTCTGCTTCACTGTGAAGATCCACTTACAA
CTGACTGCCTTCTTCCCTTCTGGAAGATTCGCTAGCTCCCATGTTTTGTTCTTTCTCAGG
GCCTCCAACTCTTCCCTCATGGCTTCACACCACTTTGGATCTTCTCTTGCTTCTTTCCAG
TCTTTAGGAATAACCACAGCTTGAAGTGATGCGACAAATGCTCTAAATGAAGGTGATAGG
CTTCATAGGTGACATAATTACTGATGTAATGCTCAAGATTGCCCTTGCTCAAAGTTTTCC
TTGCTACTTCCTTCTTGAGAGTAATTGGCAGGTTAGGTGATGCTTCTTCAGTACTTGAAT
TCTCATGTGATTCCACTTCAGATGAGCTTCCTGTAGCTTGAATTTCTTCTAATTGCTCCC
CCTGTTTCATAGTTTCTTTTGACTGCCCCCCCTGCACTTGTCCCTCCAAAACTCTCTTCC
TTGTATACACCTGAGGATTCCTTTCCTCATTTGGTCTTTGCCACCTCTGCTGTTCAGTCC
CATCAGCTACAACTGGAAGGAAACTATTTTCCGGGGTGGTATTGGCTGCTCCTTGCCACC
ATTGGCGCTGCACTCACCACCCGAGTTGCACTGCCCCTCTTGACCACCCTGCATATGTTG
TGGGTGGTCAAGTTCTTCGAATGAAGTGCTGAGACCTGTCTTATCACCATAGAAAGGCTC
AGATTCTCGAAAAGTGACATCCATACTTACAAACGTACGCCTTTCAGCAGGATTCCAACA
TTTATAGCCTCGCTGCCCCGCAGGATATCCAAGAAATATGCATTTTACAGCTTGTGGATC
CAGCTTTCCCACTGCTGGTCTGTGACCTCGGACGAAGCAAGTGCACCCAAGTAACTTCGG
AGGAACTGAGAATTTGTTCTCCCCAAATAGCATCTCACACAGGGACTTCATACCAAGCAT
TCTTGAAGGCATCCAAAATTGATCAGGAAAGTTGCAGTCATGACAACTTCACTGCACAAG
AATTTTGGCACATTCATGGTGAACATAAGTGATCGAGCCACTTCTAGAATGTGTCAGTTC
TTTCTTTCTGCAACACCATTCTGAGCAGGGGTATCTGGACATGATGTTTGGTGCATTATG
CCTTGTGCTGACAGAAAACCTCCAAATTGCTTGTTTACATATTCAGTTCCATTGTCAGAT
CTGACCACTTGCACCTGCACATTAAATTAGTTCTGCACATAGGCATAAAACTCCTGAAAA
CATTGGAATACCTCATCTTTATTTCGCATGAGGTACACCCAAGTCATGCGAGTGTGGCAG
TCTATAAATGTCACAAAATATTTCATTCCACTGACAGAAACGACAGGACATGTCCACACA
TCAGAGTGAATCAACATAAACGGGGATATACTTCTTAGCCTCTTGTGTGTTTTGCATATT
CACATGCATCACACCAAAGCTTACTCTTGTCTACTCCACACATTACATCAGGAAACATCT
TACTCATCTTATCAAAAGCCATATGCCCCATGCGGCAGTGATGGATCATTGCCATTGTCT
CACTTCCTCCAACTAGCATAGCCAAAACATGACTAGCACCAGACCTAGACACTTCACGAT
CCATATACCACAATCCACTATGCCTGTTTCCTGTCCCAAGTTTCCTTCCAGTCATCCTCT
CCTGAATCAAACATATTTTCCTTCCAGTCATCCTCTCCTGGCAATCTATCTGATCAATCA
AAGCACTTAGAGAAAGCAAGTTCACAGGAAAAGCTGGAACATGTAATACATCAGATAATT
TAATAGTGGATGTACATTGAACTGATCCAACTCCATTAATCGGTTGTGAAGTGCCATCAG
CAGTTTGTATTGTTTCACAATGTGTAACTGGGTATTGAGTATATGATTCAAACTCAGTTG
AGGTACCCACAACATGCTTTGTTGCTCCAGAATCTAATATCCAATCTGGAAGGAAATCAT
GTGTGGATATAGATGCATTTGCAAAATTACCTTCCCCTGTGTAGACAACGTGGGCAAAGT
TCCCAAAGGTGTTGTCCTCCTGGCTTCTACTCTTCGGCTCCCCTTGAGAGGCTGTTGACG
CCCCTTCTTGTGTTGCCAAGTTTGCCTTGAAGCCACCAGAATAATTCAACCCCCTGGAGT
TACCTCTGCCTCTAACTCCCCGGTATCCTCCCCGGCTGCAACCTCTTCCCCTACCACGTA
TTTCTCTGCGTTGTGCTGTGCAATTGAGGCTTATGTGACCTTTCACTCCACAGTTGAAGC
ACTCTCTTGTCTCCTTCCATTCAGACACAGTAAATGCTGAGCGAGATGCATTCACTTCTC
CTGACCTCCTCCTGTACCATTTCTGCAATCGCCTCCTCAAGTGAGGGAAGCTTTGGCTGA
TGAAACAACCCAGCATGCCTCCCTTCAAATTCCGAGTTAGGTCCCTTCAAGAATTTCATC
ACTCTCCTACGCTCTGCCCACTTTATAGTAGCAACTATACATTCCGAGTGAGGTAACTCC
AGTGGATCATAGTGGTCTAAGTCAGCCCACAAATGCTGCAATTCTGCCACATATTCCATC
ACCGACTTATCCCCTTGTTTTAGCTTATTTACTCTATCCTCAATCTGCTGGGCATGTGAC
CACATGGGCCATAGCACACACACACAAACACACACACTGAAGCAGAAGGCACAAGCCCAA
CAGGCACAGCCCAACATGTGCCATATGTGTTCAATTCTGATCTATTTCGATCAATGTCAT
AGGTCAAGGATGGCGAAGAAACCCAGCTGTACCACAAGAAGGGTATGGAACAGCAAGCAT
CATACCTGATCAAGGGATTTTCCTAGCTGCATCAGTTTACCGTCCTGTCTTTGAGGTAAC
CTGTCACATACTCCCTCCGTCCTAAAATAAGTGTCTCAAGCACAATTTTGTACTAGAGCT
AGTACAAAGTTGAGGCACTTATTTTGGGACAGAGGGAGTACTTCCCTTGTAACTCCTACG
ATCCTATGTCTGTTTGATTACTTGGTTCATGATGATATTTATTCCATTTTGCAGTTTATG
AATAAAGTAGGATTGATGCTTCCTCGAAAGTACTCACAACTTGGGTAATGTGCTAACTAT
TTAATTTGATTCTGATTCATGTGTGAAATTGTGCACCTGTACTCCTGCAGTTACTATTAC
TATTCAGTGTGTATCTTAATTCTGTTTAATAACCTGAGTTATATAGGTTCATTGATGATA
TGTGGTGTAATGTTTGTGTCTACCGCTCCATGTTTTTGACGCCAGCCTTCTGTTTTCCCA
GACAGTAGAGTTAGTAGTATGTATAAGTAGAGACGAACTCTACATTATTATTTCTGGATG
TTCCTTAGCTTGGATTTAAAGATGTCACAAGCTTAGGCCTTGCCCAACGACTGAGTTGTT
TTGAAGTTCTTTCCAAGATAAGCTTGACAGATCCATTTGCTCATCATGCTTGGTCATGTG
AAGAAACTCCCCTAAAAGGAACCCTTATATGATTTGCTGGCCAATTTTCTCTCTCTATAA
AGACTAGATCCTCCTGGCTTACTCGGCTTTCTCATCGGACAACACCATCTAAAACAAGGC
TCTTTATTGGATTTTGACCAGTTTATTTTCTTTTGTGATGATGCCTATCTCTGGATAGGA
GTGCAGACAACATAGAGAAGTAAAAGATGGCAAAGAAGGCCGCAAAGCGAGCTGTGAGTG
AAGCAAGGGGTTGGGCGTACGAGGACCTCTACCAACGGTTAGACACGAAGGAAGGCGAAA
GGGACATCTATAAGATGGTCAAGATCCGAGAGAGGAAGACGAGGGATATTGACCAAATCA
AGTGCATCAAGGACGGAGCAGACCAACTCCTGGTGAAGAACGAGGAGATTAAGCATAAAT
GGCGGGAGTACTTTGACGAGATGTTCAATGGGGAGAGTGAGAGCTCTACCATTGATCTGG
ACGACTCCTTTGATAATACTAGCAGGCGTTTTGTGCGGCGAATCCAGGAGTCGGAGGTCA
AGGAG