morexGenes - Barley RNA-seq Database

Contig contig_57556
Source Contig contig_57556
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57556 (7251 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_57556

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70188	5	3426 bp	AK364217	Available	Available	None
MLOC_70187	2	976 bp	AK355094	Not available	Available	None
CDS Structure of MLOC_70188

CDS Structure of MLOC_70187

Contig Sequence (7251 bp)

>contig_57556 7251 assembly3_WGSMorex_rbca.fasta
GTTAAGTTCTTTAATTGCCCAATATATGAAAATGATGGTACTCCCTCCGTTCCTTTATAC
AAGGTCACTATAAAAAATATATTTTGCGTCTATATAAGGCCACAGACACTAATTGAGGGC
AAAATTAATGATATTTCCTCATACTAACAACTTGTTTAATGATTGCATGCATATAATCAT
AATGACAATTAGCTACTTTCTTCCCATTCCTTCCTTCTATGCATGCGGTATATTAATGAT
CCCGGTTAACGAAAAGAAAGTTGGCTTGCAAAGCATTCACTAAATTTTATCTTGGTAATC
TGAGTTTGTGGCCTTGTATATGGGAATGGATAGAGTATGTCATTTGCATACTCTCAAAGA
AAGTATAGTCATTTTAGATTAGGAGCGGGTCACTTGCTCAACCCATCACGAGGCATTAGG
CCTCGTGCACCGCTTCCTTCACATTATGTCCTCCACCCATTTGTTATCCCATCAACACTT
CCTTGTGGTCCATTTTCTTCTCTGCAACCGCCATGGATGATCTCCTCTATCCACAGGTTG
ATGCAACGGCGGCTATGGGCGGTTGTTGCAAATCCAGGAGGTTCAACATCGACAAGTGGT
TATGTGCCTCGGGCGCACGTAGCGTCAGTGCCAGCGGGGACGAAGAAAGTTGTGACAGTC
GGTAGGGGGTATGCTGTAACCGTGTATGAAAGAGTTGACTAACAGCATGGTTGTATGTTG
CAACCGATGGCGCGAGATGCCTGAACTAGCTTGGAGGATGCTGGAACCAACGGAGGATGC
TGCAACAGTGGTCGTACCCGACAATGAAGGACGGCGAGTGCTGCAACCGTGTTGGTTGAA
TCCGGAACCGAGATCATTAGATGCTACAACGCGACTACCGGAAGCTTTTCCAATGGTGGC
CAAGACCCGACAGGAAGCTGCAACCGCGGTGTTTGGATGATGGAACCGGCACCCATCGTA
GTTGCAACTCTCTTCGACGATGGCTACGGCAGGGTGCTGCACCGGTGATGAATGTTGGAA
ACCGCAAGGCCGATTTGCTCGGACCGGCAGCGCGTTTTGCTCCGGACCATGCAAGCACCG
GTGCCGCAACCGTCGGGCCGGCGAACGGCCCCAAGATGTTGCAAGGGAAGGCGGTGGGAG
GCCGTGGTGTCAACGAGCCAACGCGCTGCGGAAACTACCGCGAGCAAGGAAAGAGATTCG
CGATGGGTGTTTGCGTACAGAGGAAAAGAACAGATGCCGATCCGACGGCCATGCGCATCC
AAATCAAACACATCTTACACCTGGGAGGCGACCGGCCCAAAGCTGGCGCCGGTCGGCCGG
CGCCCAGGGACATCACGTTTGTAGATTCATTTAGTTGCAAGACGTGCGCTGTCCGATCGT
TTTTTCCGTGGATAGAGCGACGTCCAAACGGCCAACCGACGGCCACTCACTTCAGCTAGC
TCAGGCCAGCAGCACAAAAACCAACAAGCGAGCGCGAGCGCAGGCCAGGCCACCGCACCG
CATCCATCTCATGGCGCTCTTCTCCATCCTACGCTCGTCTCCGCCGGCCGTCCCGGCGGC
CTCTTCTCGCCGACCACCCAACCACGGTGCCCACCTGCTACGCGTCAGCATCAGGGCCGC
CGCGCCGTCTCTGTCCGTGAGGTGCGAGCAGAGCAGCAAGCCGGGAGGCGGCAGCGTCGT
CGACGTGTGGGCGAGCCGCCTGGCCATGATGAGCTTCGCCGCGGCGGTCGTCGCCGAGGT
GTCCACCGGCAAGGGCCTCGTCGAGGTACGCACGCTCCCATGGATCGACCGACCTGTGAC
GCCTTGCTCTGCTGGGCTAGATGTTCACTATTGACAGTGATTGGACGTGTTTTGCAGAAC
TTCGGCGTGGCAACGCCGGCGCCGGTGCTGGCGCTGGTGGTGTCGGCGCTCGTCATCGGG
CTGGCCGTCCTCTTCATCGTACGGTCCGGAGCGCAAGATTGATGGATCCATCGCGCGAAG
TAATTGAAGACCTTTTTTTTTCTAGAATATATACAAAGTAACCGAAGACCTACTTCTGAA
GAACGAGTGTGCAGATCTTCTTTGCATCTGATTTGCAAAGGTTCCTGGAGATTCTAATTA
GCATTACTTTCGACTGTAAATCATTCGATGTATGCATATGCATATAGCAAATTTCGGTTC
AAATTCAAGTCAGCCAAAGGCTTCCGATGTTGCTAACACTTTTGTGTGTGAATTCAGACT
GGTGCTCAAAAGTCAGGTTGTAACACCCTGTTAATTATTCAGTCATATGATTGTGATGTC
CGTTCAGAATATGTATATATACCATATATGAAGTTCCCGAAATAAAAACATTGCGCATAT
AAAACTAGAGCATGCAAATGGATGAAACATGGTTCAACGGTTCCATCTTTTAACTTAGAT
TTGGCCAGGTTGTCAACACCGACCAGGATCGGCGGTCCAAAGCCATTCAAGATAGAATTT
GGACCTCCGATAACCAGGATCAGCGCAGTCGTTCGCTGAAAAATGCAATTGAAACGGAGG
GAGTGTATCTTATACCCGAGGGCGGACGTGACAGTGTGTGTTGTTCCAAGTTTTGTGTTG
GACGATTTTTTATTATTTTTTTTTATTTTTTTTATTTATTTTTAAATTTTTAAATTTTTC
TCTTTTTTTCCTTTTTTTTTGGCTCCCCTCCCATCGGACCTCGCGGGCGACCCGAGGGCG
ACTAGGTTTTCCGCCGTGGCGCCACTCCCCATCCACTTCCCCTATCGCCGTCGTTGGAGG
TAGCGGTCAGGCCAGCCCATGCGGACATCGAGGATGGCGGCGGCGGGGTCTCGGTTGCTT
CGTCGCTTTGGCGGAGGGCCTTGGGTGCGCCGGGGCGACGGCCTTGGGTGGTGAAGCGGT
GGGCCTTTGGCGCTGCAGATGCTGGCCGTCTTCCTCAGCCGTGTGGGCGGCGAGACGACG
ACAGAAGAAGTCGCCCTCCGTGTCGGATCTGAAGTTGGGATTCATCCACCTCCTTGGCCC
GCTCCCCTGCCAGATCCAGCCGTCGAGGACCTCCTGATCGTCGGATCTGCTATCTGTCGG
GTCTGGTGGTGCCAGCATGATCGGGAGAAATCCATTGGTCGACCATGTCGACCTAGCCAG
TGGTGTCGCCCCTCTTTGGAGGCACCGTCATGGTTTGTATCTCCCTACCACTATATGTTA
CCTTCGGGGGAAACCCTAGATCACTAGATCAGATGACGGCAGCTCTCTGGTGTTGTTTCT
CCCTTGGGGTGCATTTTTGGAGGTACACACGGGCTCGAGGGACCGGAGGACGGCTTCTTT
GATGGAGTTGTGCTTCATCTTACACATTCATGGCGGTGGATCTCGACGGCATGGCACTGT
GGAGACTCGGCGTCTGATGAGCGGGGATGGACTCGCGCAGGAGGAGGATGTTGTCTGGCG
TCATGATGGCGTCGATGGCAGAGAAGCCTGGCAAGGGCAGTGCGTTAGTTTGCTCTAGAG
ATGGATTGGTGAAAGATGGCGACGACGACATAAAAGTGCGTCGAACCGGTTTGTGTCACA
AACCCAGTATGTGACTTGGTTTGGGCCTCTGGCTTTAGATATTAGGCTTTTATGCGATGT
TTGTTTGGTATTAGGTTCGAACTATCAACACCCCTTCATCATGTGGTTAGGAGTAGCGAC
AGATATTGCTAAAATGATGGCTTTAGACTACGTGTTGTATTACTTTATAAGGTCTTTGTG
AATAATTAATAAAATGAATGCATGCACCATCCAAATGCAAAGGCCGGAGGTAATCCTCCT
TTTCAAATAATAAAAAACTTAAAGGGAAAACAATCTACTACCATGGGACCTGTTACTAGG
TTTATGGACCCACATACACAAACTTTTCAAGTATTCAGCAGCACGTCCAGCATCTGCTGG
ACTAGACAGATATCAAGCAGACTGTCACAAATGGTACCCAGGTCATGGCAAACATCAAAA
ACTCCTATCACAACATTATTACACTAGAAATAAGTGATACTTGCTGATTAACAGAACATA
TGCGGAGCATCGATAAAACTCCAGCCATTATTATTAATACAGTATGCTCAGTTCTGGGGA
GATGACCCAAGATGTAGTACAAATATTACATGCTGAACAAGACAGAATAACGGAACAAAT
AGAAGTTTTAAGACCCAACAGATGTCTGCTCTTTCGACCTTTTGATCACATCAACCTTAC
CGGATTCAGCTCAACCGATCAGTTGCAATTGCACCGACACAAATTCCCGCAGGTGACAGA
ACTGACAGTAACAACAGAACGGTCCGATTGCTTCAGTAAGTAACGAAAACAACCGCTTTG
GCATTGAATTTGTACACAACAGATAACCTTCTCGCCAAGTCACAACGACACAGAAACGTA
TAACAAAATGAAATGACAACGTCAACCTTTGCTAAGAACCGGTCAGGGCGAGGCAGAGGG
GCACGGACCGAATGCCGCGCCACATGCTATCCACTGCTTTTTGCGGCTGCAAGGGAGCAT
GCAATCAGGTACCTTCTGCCACTCCTTGCTCACAAGGTTGTACATCACGAGGCGGTTCAT
TCGCTTCGCCTTCAAGGAGAGCATGAGCAAGCCGCTGTTGCCCAGGCAGGTCATCCTCAT
GTGCTTACCGTAGAATTCTAAGCACCAGATATTTGGCATTCTGTCCACCTCCTTCCAGAG
GAGAGTCATCTTCTGCAACTCCCAGATGCAGACGCAGGTCGCTGCGTTCTTGCACAGCAG
GCCCACAAGCATGATCTTCCCCTGGAACTCGGCAAGTGTGTGGTCAGTCAGATGCAGCGG
CAGCGGGATGATGAAATGAATCCAAGTCCCGGTGCTTACATCATATGACAACACACCCTC
GGGTTCTGAGCACATGAAGTACAGTGTGCTGCCAACCGCGACTGGCTGTGACCTGAAATT
TAGAGCAAGTGGGAGCTTGATGCTTGGAGGAAACTCGCCTGGCTGAAACCACATATTCTG
CAGAGAGTCGTAGACCTCATGATTTCCATCATTTCGCAACCACATCACTTTGTAACCCTC
ATTAGGAGCTCTTCCATTCAGCACCATCCCTACTGACACTCTTGACCATGCCTGAACTGA
CCTGGGAGGAATTTCCTTTAGTGATTGTGTAAGAGGGTTGCATATGTAGAAGTTCCTGTG
GCTAAGATCCAATAAGCAAACAAGGCCACCTGCAGATGCCACTGGCATTACTATGTTTGC
AGGAGCAAGGGGAACAGAAGGGTGGTGCCATTTGTTTAGCGAAGGGTCATACATCGCTAC
ATTGTTGTTGCCATTCTCATGTGTGATTGTATAGAACCATGGCATTCCATGTGGAACTTC
AGAGTACTGCTGAGAGAAATTGTCTGAGCCTACCATAGAACACCACTTCCGACAAACAGT
GCGGAATCGAAAAATGGCAGCCACTGGAAGCCTTGCGATGACAGTTTCAAAAAGGTCTTC
AGGGAACTCGCTCCAAATATCTAGCTTCATTGCTTCAGCTGAGTTCAGGAAGGATGCTTT
CTCTCGGTTTCTGTCTCTGCGTGGTCGCTTGCGAGGAGGAGATTGGTTAGCTTCCATGAT
CTTCAGCAATTCCGAGTTGTATCCAGTCCTTTCTCCACAATAATCATCCTTGACCGAACC
ATGCTCAAAATCTAGTAGATACCACCTGTAATAAGATATTTAAAAAATACAGTTCGTCTT
AGTTGATGGCAAAGCAATGGAAGAATTTTACAACTGCCAACGAAAGGAGATGATCGACAG
TTTAATTGATGGCTCAGTTTAGTCTTTGGAACAGTGCTTCACAACTGTGTTCACAGGTTT
GTCAAATCATGAACACAGGTAAGCAGTTAGCTTTTTGTAGCAAGCTGTGATTGTTACATT
TTATATTAATTGCTATGTCACGTGGTAATAACTGGTACCCTGATAAAACATAAAGCAATC
TATGTTGCTAGCAGGCTAGCTAGATGTTTCTAACGAATACTATAGAGTTGCCCTCCAAAG
GGCAAAACATCACATATTCTTGCGCATTCAAAACAAAAGTTGCACAGAAATATGTTTTAC
ATGCATATCGGATGAAGGTGGCACGATACTTATGCGCTCTAAAAGGACAAGCAGCACGAC
CATGTGCACAGTCTAAACAGATTTTGAATCACCAACCAAACCCGTAAGATTACCAAAATG
GAGTCCAAGCTGTTTGTCGTTTTAGCTATACTGACTTGGTGAGCATAAACAAATAGTAAT
GCAAACCAATGTGAATTGTAAATTCCATTATAGCTTTATCCGTAAGAAACCAAACCAAAC
GCACATTATATTTCCTAAAAACACGCAGCTTAACTAAGCAAGGCTAGAGATAATCCCCAA
ACTGTAAGCACTATGCATGCAACGCTTGCTGAAGCACAGCAGTAAAGTGATGAATGAATA
AAATAAGCACGCATCATCATGTTGTTCACTAGTTTTAATTTTCTGTGGGGTAGTATGTTG
TTCGCCACGCCAGTTCATATACACGACTTCCTGAATTTCGGCACCTTGGCGTTAGCAATC
GTGTAAACTCGTTTGCTTTTTTTCTATTCCGTTCAAGCCTTGCAAACTAGTCTGAACGAC
GACGCCGTCAGAATAATCACCGTTTCCCTTTGTCGCCTGGTTCCTTTGCCTACAAGGAGC
AGTACAAACGCGGTGCGCCTCCAAAGTCAACTTAACTAGGATATACAGTATGTTATTAGG
AGCAGCAGCATCACATGCCCTGAAACAGCCTCCACGTCGCGGGATTTCTCGCGCCTCGTT
CCGCCATCCATGGTGGATATATACGCGTGAAGTGCGCCGCGGGCGGGGGGGCAAAGTGCA
ATGTCAAACGCTACTCCGGAGGCTGGTGGATAAAATAGTGGCATTAACAAACAATTTCGA
GGAGGGAAGAAGCAGGCTAGCAGTGCGGGCGACGCCACGGCCGTTCCCCTTGGTCGCACG
CCACCGCGCCTCGAACTCATCACCGAATCGGCCGAGGCAACCGAGCGAAAAACGACGGGG
AAAACTCGCGAGGCGCCGCAACGGAGCCCGGCGACAGCGCCAGCAATCTGAGCGCGCCCG
CGGCGCCCGCGGGGTATCCGCGCGACCTAATCTCCGCGCCGCCGGAGCGGCCCCGCGCCC
GCGCGCGCGCGGCGGATCAAACGACGGAGCGGGGGGGCGAATTCGGAGGAGCGCCGGGCG
GAGCAGATCCGACCGAATCCGCGGCGGCGGGGGGGAGGAGAGGAGGGGGGG