Contig Data
morexGenes
Links



Map Locations of contig_57536 (4407 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_57536

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70170 1 1104 bp MLOC_70170.1 Available Available LOC_Os09g26860.1, FRAME:+2, EVALUE:2e-22, 13109.m02598 protein retrotransposon protein, putative, unclassified
MLOC_70171 8 2464 bp AK376524 Not available Available None





CDS Structure of MLOC_70170






CDS Structure of MLOC_70171






Contig Sequence (4407 bp)

>contig_57536 4407 assembly3_WGSMorex_rbca.fasta
ACGTTCCACTGGGAGGCATTTTTCTGTTAGCAACGTGTATATTTACCATCCACCTCCATA
TACACCATCCACTAGAGATGCTCTAACAGGCTAGTCTTTTGGGGGGAGAGGGCACAAATC
CTCTCAGAAGTCGATGTTGCTCTTCAGATGGGTCTGGTTGACGCATGTGGATCAAAAACG
CTGATGTTAGCGGACCCGAGATTACGTAACAGTGATATGATGTACCTACCACAGTTTAAT
TACAACGTCAACAAGACACGTGGCTAACGGTTGAATTTCAAATCAGGCTCACTTGTCATG
TCTAGTTATTCTACTATCTGGCTTGCTCCTATCTTTTTCTCGGTCATACTAGCCTGTTTC
TTCAGAGTAAATTTATTTGTTTAGTTTGTCTTCTATTCAGCTATGCATTTTATGTTTGAG
TGTACTATTTTTCTTCAAAGAACTTGCTTTTTCGAACAAATTGAGCCCTAGGATCAGTTG
TTGCTCATCGTCGAGCCTTTTTACATTTTTTATCTTTGTGGTGTATATTTAGTTGTTGTG
CTTGTTTTAATTATGTTTATTTATAGTTTACTTCTTTGATTTGCATAACCAAAGTAGATG
TCACATGGAGTACAACATACAACCTTTCAGTCCGATGTGCATACATGGCATGCTTGGCAC
CGTGAGATGACTTAACAACAAATGTACGAACGGCTGGATAGGGCAGTATGATGCGTGTCG
TATGAAAGAACGTTGGATGTAGTATCAATGTTCTATTGCATGGAAAACTGTTTGAATCGT
TTTCTTTTTCAATACCGATAGCTCGTTGACGTTCTTTTAGAGAGGTAACGAGCGATCCCT
ACATCAGGCATGTTTGGGCAAACGCGCAGTCGTGGAGCGTTCCCACAGAAAACCACTTCC
AGTGAACGCTCAGGATTTCCATGCTATAATAGGTATATTTGTCACGCTATTACACAAAGA
TTTGCCATGCTAGCAAAAATAATTGTTAAGAATTTTCCATGCTGCAGTAGAGTAAATTCC
CGTGCGTTTTAGGGATTTTTCATGACGTAGTAAAGAGAATTGTCAGGCTAAAGAAAAAGG
AAGACTTGCCCACATGTTAAAAAAATTGCCATGCTGCAACAGGCCGAATTGCCGTGTACA
GAAGAGTTGTCATACATTCTTATAAGTAAATTGCCATGCTACATCGTAGGGTGCCACGCT
ACACATGGAGTTCTTCTCTCTGAATGGTGTATGTGAGCGAATGTTTGCATTGTTCCTTCC
ATAGAGTACATGGGGAATAACGAAAATTGTCACATGTCACTGCTTTGTGATTCGCACACG
AGATCAAACATACCAGAGAGCATTCCCTAGAACAAAAAACACTTCTAGAGAACGTCAGCT
CATTAGCTATTCCGGTTTTTCACGCGGAGTTCTGTTTGAACCCCTTGGAAAAGATCGCCG
CAGGTAGAGGAAAATCAAATGTGACTGGTTCATCAGATAGCAAAAAATACCATACGTGGT
GGAAAGAATCAAGGAAACGCAGCCTTTTGTTTTGTCAAGCACCACCAGCAGAACCGATCT
GAAAATGAGCTTATGTAAGATGCCAACAATATATTTCAAGGCTAAGTTGCTGGTGGAAAT
GGGACTAACCTAGTCCTATCATCATCAGGTGTATCTTGGACGACAGGAGCCACATCGTTC
GATGATAGACCATTTCTGCACAAGTTTTAAATCATTTCATAATATGCATTAACGTGGAGA
AAATGTTTGAAACATCGACATTTCCACTGTTATAAAACTGTTTTGATTTATTTGTGTTTC
ATACTCCTTTGTACTAGCTCTAGTACAANNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGG
ACGGAGGGAGTATATAACTGGTGGAACAAATCCTCACAAACTGGTGATATTTCTTTTAGT
TTCTTGCATAAACCCTAAGGAGCCAAAACCGATTTATCAGAAGAGAGGACAAGGAGAGAT
CAATACCTGTGCTGGAATATTTCTGCAACAAATGCCAAGTTCAGATTTGCTGAACCCTCA
ACAATATCTTTAGATGTTACATATCTTGTACAATCAAGCTTTTCGGCGGTTTCAAGTACT
TTCTTTGCCCTTTCTTTAGGATCTGTAGTTTCTATCATAGTTGTTGAGCTATGCTCGGGA
GCAAGGGCGCTGAGAAGGTAAGCATACGCTTCACCATCCTGCAAATACATCATACGATAG
CATAATGAAATCTTTTGTATTAAGCTATTAACATTGCCGAAAAAGTCGTCAATATCATAG
AATGATTTAACAGTGCTACATAAAAGTCAGAGTGTTTATTCCCGCAAAACAAAGTCACAG
TATTTACCATCGATATGAAAAAAAATTGCCTAGAGGTTGTGCATTTTTCAGGCCTGTTTT
GTCTTATAATAGGTGTAATATCATTGAATACAATTGATATACATACCTTAACATCAGTAG
AGAAATTTGTTACAGTTTTTTTGTACCCTGCTTTCTTGATATGAAAGTTCATCCATTTGA
GCAACATCTTATCTGGTGCTAAGGTGACAAGCTCCTCTGCTTCCTGTATAACATTATGTA
ACATAATTATCCAGACTATGCTAATGAACAAGCATGTACATACAAGTTCTGTTGATGATT
CGAACCTTGCTGTTATCATCAGCCACCAACTCTAACAACTGAGGTGTTTTCTTCAGATTC
AAATCAGCTAAGAGTTGTATCTGAGAGAAGTCCAACGAAACATATTGGAAAGATAGCATT
CATCATGTAATACTATATTGCTTTAAAATTATTTAGTAACTAACTCAGTAATGGTGGTTA
GTAGAAAACACACCTTTATGATCTGGGATAGCAAACCAAGAACTAGATGAGGCTGAAAAA
GGAAAAATACTTCAGCGGTACAAAGTAAAAGGATTTAACAGTAATAAATACTCCCTCTGT
CTTAGTACAAAGTTGAGTCATTTTTGAGTNNNNNNNNNTGGGACGGAGGGAGTACTATAT
TGCTAGAATCTTTACTCTTACAAAAATGTGAGATGGCGATGGTACGCCATATCCTATCAG
ATCTTTTTTTTCCTACCATCCTAAAATTCTAAAAATCTAACTTACTGAGCAACCGCTCTT
TCCCACCTTTCTGAAAAAATTGTGACAATAAGAACTAATTGAAACAGAAGAAAGCTTCTA
AGAATAATAAAATAAGCATACTCTTTTTTCCACCTTCCTAGAAAAAATGTAACAGTTATT
GCTGAACGAATATTTGGCACTATGGGTGAGGACTACGGGAGTGGAGCTGGACCAGAACGA
AGGGGACTCGGTTACTTGGTCCTGCGGAATCAATGGAGAGTACTCGGTTAAGTCCGCATA
CGAAGCCAAATTCTGGGGGAGGCTGGTAGTTCCCACGGCGGAGTTCACTTGGCAATCCAA
GGCACCACTACACTACAATGCAGGTTCTTTGCATGGCTTGCCATACAAAATAGATGTTGG
ACGTCCGACCGCTTAGCGAGACATGGTTTGGATCACCAGGACAGATGCTTCCTTTGTAAC
CAAGAGGAGGAAACAATAGAGCATATTTTGCTTCACTGCATTTTGCGAAGGAGGTGTGGA
CTGCTATCCTGTACTCTTTGGGGAAGCAGGAATGGATGCCAATGGCCGGGCAAGGGATAT
TGGACTGGTGCACAAGGGAGCAACTGGACAACACAAGAAAGAGGTCCGAACACTACTCAT
ACTAGTCATATGGGGGCTATGAAAACATCGCAATGGTATAGTGTTTGCCGGAGCTACACC
ATCAAATAATCATGTCATCCTCAAGATAAGGATGGAGGAACGAGCCTGGAAGGAAGCGGG
TTTGCTCAAAGGAAGCACGGAGGACTTCTTTCGAGCCGTGGAAGTGTGGGCTAGAGTAAC
AAGTTAGGCATAGATAGGGTGGCCTAGGACTTGATATGCATGTAAATTGTAACACTAACG
TGTAGGGGCTCTTTTTACCCCCATCCTCTTCTTTATAATATAGTATGCACACGAAAAAAA
GAGAGACACACCCCGCAAAAAAAAACTAACTGAGAGACAAACAAAACAAAGCTTGTTTGT
ATATAAAAACAATTTAACCGCCACCCTGAAATATCTCTAAATAAAAATGGAGCTGAGACC
TTGTGCTTGCAGAGACATTGTATATAAATCATTCTGTGAACTGGACCAGACCGATGACAT
TAAGGACAGTATAACCGCACCTAATCCCAGCCCTCACAGCGTTTTGCGTTTTTGGCCGTC
CATTTATACGATCTGGACGTTTCTGGCCGTTGGATTTGATGTTTAAGTCGATCTGATCCG
CAGTCTGTTTAATCTAGCCCATCTGTCCTGTGGGCTGCTACTCCACGGGCCGAAAGGAAG
GCCTCCGGTGCATTGGGCTTTCGCGAG