Map Locations of contig_5750 (9730 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_5750

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_70142 4 3564 bp AK368770 Available Available None
MLOC_70143 6 5565 bp MLOC_70143.4 Available Available LOC_Os01g57410.3, FRAME:+1, EVALUE:0.0, 13101.m15083 protein pentatricopeptide repeat domain containing protein, putative, expressed





CDS Structure of MLOC_70142






CDS Structure of MLOC_70143






Contig Sequence (9730 bp)

>contig_5750 9730 assembly3_WGSMorex_rbca.fasta
TCTTTGTGCCCCCTATCGAATTAAGGGGCGCCCCGTTCCCCCCAAATCCCCCCCCCCCCT
ATATACAGTTTCTTTGTTTCCTGAAAGGACGGGGATTGAATCATAGCGTATGCATGCCTG
TGATTCTGCATACTTCGTTTGAATATGGTGTTCTAACTTGTCAGGACGAGCGCATAGAAT
TCGTGACTCTAACTCGAGATTTTTGCAGTTTTAACAGATCTTTTATTTTGTTTTTACTGT
CCAAATTTACTGCTCCCTCCGTCCCAAAATAAGCGACGGTGTACAAACACTTATTTTGGG
ACGGAGGGAGTATTACCTGCCACCACTCTGTTTTTTTAACTTCAATTAAAATCTTTGCGC
GAAACTTGCGTCAGCTATACAGTTTTTCATGTAGGCATTGTACGAATGATGATTTGGGAC
CATTGATGGCTCGTTTGCTTCGATTATTCCAGATCGTCAATTTGTAGGGGTCACATTAAT
TGATACGTAATTAACACTGCAATGATTCGTTTCGAGGACAACAGTGACCCCTCATCTATC
TCCTTTATTTACTAGAAGGGATATGTCCTTGTCATATACAGAAACTCAAGTGCTTACCTG
ATATAAGCGACATCCAAGCAGCTGAAAGTACACAAGTTTTGCCGAATCTCTGTAATCATA
CAGTAGTTATATGATATCATCACCTTCAAACCGTTTATTTATTTTAATACAATGGGTACG
TGGATGACCTTACCAAGACAGAATTGCACCCATGATTTTTAAAGTTGATTTTTAGGTCTG
CCGAGCAAATTAATGCAGTGTGGTAGCTGTTTCAGGAAAATATATGCCCAATGTAAATCT
GAAAGTCAGTTATCAAATTTGACCCACAGAACCACAAATGGTGCGGGGGGCTATATTACA
TTTGCCATGCAAATGATGTGTTGTCCTATATACCGTCGTAATGATAAGTTAACATTGCAG
GTAGCAAGCTCAAATGGATAACAGTTTCGAGAAAAATGACATGCTGAAAGAATTCTACAT
TCCGACCTATATTTTCATGCCGGAGTCCTCAGTGGAGCAAGTTTCTCACATACCCAGCTG
TCCAGTGATTGTTTTTATCAACACCCGAAGTGGCGGGCAACTTGGAAGTAATTTACTTGT
CACATACCGCAAGCTTCTCAATCATGCTCAGGTATATATTTTCATGTTTACAAGATGTAT
TTGTTCAGTACTCCCTCCATCCCAAAATAATTGACTCAACTTTGTACTTACAAAGTTGAG
TCACTTATTTCGGGATGGGGGGAGTATTACAGTACCCATGCATTTTTACTGCCAGAGAAA
GAAAATATAGCTAGTTCTAAATTTCTGAATTGCAGGTGTTTGATCTACTTGATGAAACTC
CAGACAAAGTCTTGCACAAACTCTACAGCAACGTCGAAAGGCTCAAGCTTGATGGAGATA
TTCTTGCTTCTGAAATCCATAGGAGATTGAGGCTAATAGTGAGTGCAGATAGGCATTGCT
CTCCAAATAGCGTGCCATGTTTTGACCATCATATTTCCGTGTTCGTTATTTGAACAGGCT
TAACTTACATATTATTATCATGGAAATTTGATTAGGTTGCTGGAGGCGATGGAACTGCAG
GTTGGTTGCTTGGAGTTGTATCTGATCTCAAGCTAGCCCATCCACCTCCCGTTGCTACAG
TTCCCCTGGGAACTGGAAATAACTTGCCATATTCTTTTGGATGGGTATGTACTTTGGAAG
TAGCTAATCAAAACAATTTTGTTCCTGCTAGTTCTTCTTATACTAGCGCAGCGTGTTATA
CTTGCATGAGCCGTTTCTGTTAGACCTGCTTTTACTCAACAGTATGACTTAAAACGTTTG
ATCCAAATATTTATCCTTTTTGCTGTGCATAAACGAAATTTACTATCATGGGTAAAAAGA
ATTCCGTGTTGTTATCTTCAAGTTAAGTACTAGTGATTTTGGTGCCATAGATCCATGGCA
TTCTTCTGATGGGGATTACTGCAATTCTTCGTTAACTTGCCTTTTGTGATCTATCTATAT
GTGTTAGTCGCTATCCGGTACAATACTTTATATGATGTGCTGTGAATTCAATAGTAACGC
GAAATTGATATGCAGGGTAAGAGAAATCCTGGCACAGATCGTGAGTCTGTCATATCATTC
CTAAAGTTGGTAAAAGAAGCAAGAGAGATAAACATTGATAGGTCGGTTTCTTTTCTACAG
TTTCACGATATCTGTGTGTGATCTTCATATGGATGTTATCTAACATTGTTATTACTACAT
TGTTTCAGCTGGCATACTGTCATGAGAATGAAATGCCCAAAACGTTCTCCTTGCGATCCG
ATTGCTCCTGATTTGCCGCATTCTCTGCATGCATTTCACCGTGTGCCAAAGACAGATCCA
GAAGATATGGTAACCACTGTTGATGTGGATTAGTTTTATGTATGACTCACGTATTCATAT
TTTTGTGTTAACTTAGTTGTTGTGTTTTTATTTTTAAACGCTTTTGTTTTCTGGGAGGTT
GTTATGTATTTTTGGAAAAAACACTATCATGATCTTCGTTATACATATTTGTCGTGTGGA
CAGGAGTTCAGACAAATATCTGAATAGTTGTTATCTAAAAAAGATAGTTAATCTATATCA
TGCATTGAGGACTAAAGCGTTCCCGCTGAAAGTAAAACTTCTTGCTTGCAGTCCCATACT
TTTCTATACTTAGTCGCTAGGTTTTCAAAATAATCTATACATTTTAAATTCATAAATGTG
ACATAGTTATATTGTTCTTGCGCCAATGTTAAAAACCTCAGCTTACTTGATATGCACTGT
ATGCTTCCCCATCTGTAAATTGAATCAGGAACGCCAATTATTGAAGAAGAGGAAATGAAC
CTTTTAAATCATGTGAGTCCCATAGTATGCGTATAACCTTAGTTTTTCATTTGTTCCAGG
AGTATTCTTACACATATCGTGGAGGGTTTTGGAATTATTTCAGTATGGGTGAGTTCTTTC
TTCTAAGTGTACTTTATATGTTGGTGATTCATTTTTTAATTGATTCTTGCTCTTGCAAAA
TTGGGCAGAATAAAAATAATAATAGTGTTTAGCTAAATAGCCAAAGGTGCTGATGTTTAG
TTGCTGTTTGCTGTAGACCCTTTAGGGATCATGCTTTTGGCTTTTTTTTACGTTCATGTA
CTGTAATAAGTATCATCAAAGTTGAACTGCTTTTGCCTTTTTCTATTTGCTTAATTCCTG
TAAGAATCTTGTTCTGTGCCGGTTTCTTTAAAGGAAATCGACGAGGAGGATCGTTCTTTT
TTTAGAAGATGGCCAAAAGCTGAAAGAAACTTTCATACTGTCACAGGAATGGATGCCCAA
GTGTCTTATGCATTTCATTCTCAGAGGAAATTGCATCCAGAGAAATTCAAGAATCAGTTG
TCTAATCAGGTTAACTAAGCATCTGTGCATTTCTATCATTTTACTTTTACATCCAATTCA
TGCTTTTAGTTTCTCGCTTGAAACCAACCTCTTTTGGATCTGTTGTGCAGAAAACATATT
TGAAGCTGGCATGCACACAAGGGTGGTTCTGTGCCTCTTTAAGCCATCCAATGTCACGGT
AAGTACTTGTTTGCCACTAACTAGGGTATGGGACTGCTTCAAAACAAATAATGTTCGTCA
CAAACTCAATATTAATTTTTTACATTTGAAAAAATAGTCAAGGTTTCCTAATAACATTGC
ATTCGACTGACATCATTCTTGGATGCCTTTCACTGGATAACAGGAATATCGCTCACCTTG
CAAAGGTAAAGATAATGAAGAAATCTGGAAAATGGGAAACCTTGGAAATTCCACAGAGGT
AATTCCAATGTGCTTCCCCTTTTCGGTATTGAAACTGCATGCCCATGCCAGTGTTTAGGA
GAGTATGTTCTCATCTTTGAGCATGGATAGAGATTTGAGCATGTATTGAAACTGTGTGCC
CATGCCAGTGTTTAGGAGAGTATGTTCTCATCTTTGAGCATGGATAGAACTTTGAAGTTT
CAGCTATAGCATTATTGTCTCTGTCAAAAGTGGTAGCATAAACGAGGCCACGTCTCTGCT
ACTTGCAGAAGTTGTGGATACTGTTGATCTAAACCATCACACCTCTCGTCAACAGCTCAC
AATGTACTTGGATGTTTCGAGTTACATAACTATACACTTAGGGTATAGTTAATTCCTAAT
CAACCTCATTAATTATTTCTTGATTACAAGTTTTCTGGGTCGTGATTTAGCTACGCTCAA
TCCATTTTTCTTTGAAGTAGTTCACGAGAAAAGAAAGGAAACATTTATATTTTATATATT
CTTATTATGTTTTTATTAATATATATTGCTAGAAACACGCATTGCGTACACATACAAACA
CTATCAAGCTTAATAGGCTGGACGATTTCACTAATAAGGTCGACACATCATACTTGGATC
CAACTTATAACTCTTGTAGAATCTTCCCCTTATTTATTACGATGTTCTAAATACAAGTCT
CGTTTGACTTTGAACAGTCAAACCTAGAAAACTTTGACAAATGGTATTTTTCCAAGTATT
TACTTTGATTATGTGGGACTACTTCGTAATGTTCTGAACAAGTTTTTATGCAAATGCAGT
ATCCGGTCCATTGTCTGTCTCAATTTACCCAGCTTCTCTGGTGGACTGAACCCCTGGGGA
ACACCAAGTAAGAGGAAGCAAAGAAAAGTAAGTATAGCAACAGCTTGTGGTACTCTTGTA
CTTTAATTTTTTTCTCTTAAAGATGCCTAAAATCTTAATAAATTATACTATTGTAGAGAG
ACTTGGTACTGCCTCCACTTGTGGATGATGGCCTTCTGGAGATTGTGGGATTCAAAGATG
CTTGGCATGGCCTTGTTTTGTTATCTCCGAAAGGCCATGGCACCCGTCTTGCTCAGGTAA
ATAAAATATGCAGGTTGTATTATTTCTTGGCTACATAGTATTTACTATATACCCCCGTCA
TAAAATGTAAGATATGGAGTTGGCATCAGTTGAATGTTTACACATTTGAATGGCATAAGT
AGCAAAACTGAATTAGTGAAGCTTTATTAAAAAAAACAGCTTCAACATATTTCGTGTTCA
GTTTAAATTAAACCACTTGATGGATACTGAAATCCTATTGCTTCCCAGGCCCATCGTGTC
CGATTCAAATTTCACAGGGGTGCAACTGACCATGCCTACATGAGAATCGACGGTGAGCCC
TGGAAGCAGCCTCTTCCACAGGAGGATGACGGCAAGGTCGTCGTGGAGATATCCCATGCT
GGGCAGGTCAAGATGCTCGCGACCAAAGACTGTATAGCTAAAGGCATCAGCGACTCCCCG
GCCATGTCAACAGCTTGCACAGATTCCAGCTCCAGCGATGACTCAGACGATGACTTCACA
GAGGAGCGGAGGAACTTCGGCGCTGCCTTGTCGTTCCGCTACATGAATGATGTGAAAAAA
ACAGTAGAAGCTTGAATCTCTAACTGGGTCCTGTACAGTTTGTCCTGCGTAGGAGATAGA
TCGTTGCACTGATTTTGTGGAACAGTGGACGTTGCCCCTGTAAGATCCCTTTGCTGGCAA
GGTTGTTTGTGTACGACAAAGATGTGTACGGTGCAGTGGGTTTACTTACTGGCAGTCATC
ATAAGCACTAACCAACTCAATTTCTCTCCGCAATCTCCAGTAAGGCGGCAACACTGAGAT
TAAGAAACAACAGCCATAAAGGTATTTAACCTTGTTTAAACCGTAATTTGTCATGCTAGC
AAGTCAACAAGGTTGATCATCGCTTTGCCAGCATACGCAAGATTCTAAAACTGCAGTATT
AGGACGTCATGGCTCCCTGAATCCTACAATATTTACATAAATGGCCTTTCGGATGCTATA
CATGGATCTGAAGAGAACACAAAGCAAGAAATCTAACCTCCTGCTATGGTTCCTAAAGGA
TTGGGTTTGTAAAAGAACACAAAGCAAGATTGATCCATAGGAATTTTGGTGGCATCATTC
ATTTGATCGAAAGAAAATAAAATCTAAACAGAAATAATACAGAATTCTGTAAAGGTCTTC
AATCCAAAGATGCCTGATTATCATGTGGAAGAACTGCTTGTTTACTGCCTAGAAATACTT
ATTGTCATTGCCCAGCTCCGAACAGTTGCAAGCAACATAATAATCCTATATTAACTTTGA
ACCGCGAGGTAGAAGCCCAGCAAAATCTAATTGATGTAAGTCTATCCTGATTCCCTATTA
CCGTCTTGCTTGCATCCCGGTTTTCCTTCATTTAAGTGGTCTTGTGGAACTATTTTCAAA
ACAGGAGGCCAGTGAACTTACATATGATGCTTTGAACAGATGAACTAGAACCAATCAATA
TGCAACAAACTGAACCAAATCTTGTAGGATATATACGATAGTTTAGTCCTTCAATGCACT
CAGGTCACCGTAGACAGTAGAGCAGTATAGGTATAACTGGAAAGTGATGAACCGTCATAT
GACTTACGAGCCATCGAACTGCGGTTCTAACTTCGAAGCCAAAAAAATAACATGAGGTTC
ATTCTGAACCTTTGCCCTTTGCTGCAGACAACGAAGGGTGTAGGACTGTAGGTGTAGGAA
CAACAGCCAACCTGCGAATGGTATCTGACGTCATGCCCTGTGGTTTCACCTGCAGGTGTA
GAAAACAACATGAGAACCTGACATCAGACCTGAGGATACAGCACGTGATAGATCCTAAAT
TTCTAATCTCAAAGGATCAAATGAGACGCTATAAATATACATCCAGTGAAAAGAGATAAC
GTGCTTACCAATATGAAATTCCTTAATGATGAAATTGGAACGTGTGGATAGCCTGTTTAT
AGATTAAAAATAGATCCAGCTGACGTTATATTTTCCTCACTTGCAGCGTTCTCTCGACAT
GCGAATATTCAGTCAGGCAAACCTAGGCAGAAACATGATTCATCGAGGACCACTTAGTCC
ATCATTAAAACTAGACGAAAATAGATATTCAGAATGTATAAGAAAAGCATAGTCAACAAG
GCCCTGGAAAGAAAGCAACTATTCACATACCATTGCTCATGGAAGATAAATCAAAATGTT
TATAAACACGGAGAAGTATAGTCAAATAATTCAACAATTTAGTCTCAAACTGCTGAAACT
GAGAAGTGTTTCTAAGAAACTTTATTTGGCCTGTATCTTTTATTCGGCCGATATGAGTAT
GAACATTCTTTTATCTCATTTGCTTGTGTTATCCTCCAGCCCGTCCTTTTGATTTCCTTG
GTCTTCACGCTTCAAAGACCTGAACAAGATAACTTCTGTTAGTGACATTTCTACAACCTA
AGACTATTAAAATGTATGGAGTAACAAAGCATATGATAGTGTAAAGTGGGAAATTTTGAT
ATCAATAATAAATCTACATGCTAACAGGGTAATTTGAAGTTGTACAACTAATTAAGCACA
AAACATGCTGGGTTCTTATTTTTGAAAGGCGACTCAAAATATATAACGAGGGAAATAAGG
TAACACATCTAGTGAACTAGGAAAGAGAAAGTTTCAAGAACATAGTATATCTCTGTTCTG
CAATTTTACGGTTGAAAGTCAAAACTAAGACACCTGGAAGAAAGTTACATCCTCATGATT
TCTGTGTTTGTACTTCTCACCTATCCCATCTTTATGGATCATTGTAGCTTGAAATCACAC
ACATTCCACCTTGCTGTAAATGAGGCATATTCTCCGTGGAGACTCAACAGAATTTAATAA
GCACCAAAGCCTGATGACTCAAGGCATATGCACAGTCCTGTTTCTCTAACTCTTTTCAGT
AATAAGGCATATGCACAATGTAAACCACAACCTTACTGCTGGTCTTCAAGTAAACTCTTG
CTCAAGACCCCTTTTGCGTACAACTCACTCAGTACATATCGTGCTTCCTTCAACAGACCC
TCATGGGCAAGGCCTTCAATGAGTATAATGTAGGTTGACTCGTTAGGCATGCAACCGTTA
GACACCATATAAGCAAAAAAATCAATAGCCTGATCTGTTTCACATCTTTTACAGAGGGCG
AACAGTATCTTGTTATACATCCCAACTTTTGGTCTCATCCCCATATCTTGCACAGCATGC
AACATCTGAATGGCTTCTTCGGTTCTGTCTTCTCTTGAGAGGACATCAACGACCGAAGAG
TAGGTTATTGTGTCTAGGGATACTCCCTTACTGACCAAACCATGCAATAGCTCCAGGGCT
TCTTCTGAGTTGCAATCCTTGGTAATCCCATCGAGTAAAGTGTTAAATGTGATCAGATTA
GGGGTGCACCCATGCTCCATCATTTGATTCACAAGTTCCATTGCTTCCTCGACAAACCCT
TTTTGACAGAAGAAACTCACAAGTACATTGAAAGTCACTGCATTTAGAGGGCAGTCCTTC
TGAATCATCTCAGCCAAGAGCTCTGCAGCAGCATCCAAGCGCTCGGCATGGCACAGGCCT
GTCAACAACGTAGTGTATGTAATGGTGTTGGGCTCACATGGCAGATTATTAAACAACTCA
AGAGCACTATCAACACGCCCTTGCACACAGAAGCCATGGACAAGAGCGTTGTATGTGACG
ATACCCACTGAACATCCATACTCTGGCATCAGTTCAATAAGCTTGATAGCTTGCTCAATC
AATCCTTTCTGGCACAAGATACAGATGAATGTATTGAATGTAACCTCATTTGGGGGACAG
TTCTTTCGGACCATCTCTGGCAATAGCTCCTTGGCATGCTCCCATCGGCCGGCGCGACAC
AAGCCCCTTAGCACAGTAGTATAGCTAATGGTATCAGGATTGCACCCATACATGCCCATG
TTGTTCAAGAAGTCATAGGCATCATCCACACGACCCTGTTTACAAATAGCGTTTATGACA
ATGTTGCACAAGGTAGTGTTGGGTGTGCATCCATGCTGTGACATTTGCTGAAGAACTTGG
ATTGCCCTCTCCACCATACCTCCACGACAGAAGAATCTGACTAGCATGTCAAAGGTAACC
TCATTGGGCACGCACTTCTTGTCCACCATCTCAGCAAAGAGCACCTTGACGTCGTCCCAT
CGCCTAGCGGCACACAAGCCCTTGAGCACAGTGGTGTAACTGACGATGTCGGGCTGGAAC
CCATAAGACGAGAGCCGATTCAGGATCTCCTTGGCATCGTCGACGCGACCCTCCCTGCAC
ATGCCGTTGATGATGACGTTGTAGGTGACAATGTTGGGCGTGCAGCCCTTGGCGCGCATC
TCGTCGAGGACGTTCATGGCCTCCCCGAAGCCGCTGCTCTTGCACACGGCCTCGAGGAGG
ACGGTGTAGGTGACGACGCTGGGCTGGCAGCCGCGCTGGAGCATATCGTCGAGCAGGGCG
AGCGCGTCGCCGACCCTTCCGCGGTCGCAGAGGCCCCGGATGATGGGCGTGTAGGTGTAG
GCGTCGGGCGGGACGGGCATGGAGGCGATGAGGCGGCGCGCGGCGTCGAGGCGGCCGTAG
CGGCAGTATCCCGCGACGAGGGTGTTGTAGGCGAAGACGTCGACCGGGGCGCCGGAGGCC
TCGGCGGTGCGGAGGACGCGCGCGGCGTCGGAGGTGCGGCCGCGGCGGCAGAGGTTGCGG
ATGAGTTTGGTGCAGAGGTAGACGTCGGGGGCCTCGCCGCGGGAGGAGGAGGTCTCGACG
AGGCGCGCGGCCTCGGCGAGGTCGTCGCGGGCGATGAGGCGGCGGAGGCGGGAGCTGGCG
GGGGCCGCGG