morexGenes - Barley RNA-seq Database

Contig contig_57485
Source Contig contig_57485
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57485 (7726 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_57485

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70124	1	1497 bp	MLOC_70124.1	Available	Available	LOC_Os01g14180.1, FRAME:+3, EVALUE:2e-136, 13101.m01562 protein expressed protein
CDS Structure of MLOC_70124

Contig Sequence (7726 bp)

>contig_57485 7726 assembly3_WGSMorex_rbca.fasta
AAGATTTTTCAAAGTGAGTTACATGAAAAAATTACAAGTTGACCCATAATTTTTATTATA
TTTGTGAAATACATATATATTTGTATGTAAAGAAGAGCATACACAAAATATGATACAAAA
AACAGTGTATATACTACCTAAACTTGATTATATACTACATACTACACATACATACTCTCT
AATTTGATACATACTCCATACAACATACAAAACGCAAGTGGTGGTAACTACCACCGGTGG
TAGATAAAATTTGTCCTAGAGGAGTTGAATTGTGCAAATTATGTGAAAACTGATCAAGAT
GTATTTTTGCTCATGTATGTACCTTTCCACGGTTGGCGCAGATGTAGAACTATCACTATG
GATTCCATTCAGTATGTGATATATGCTTATCAATAGGGCGTCGACAACCGCAAAGAAGAC
TAGGGCCGGTATCTTCGACGCTGGTGGTCTAGCTGCCGAAATGAACGGAAGTCGCGTTGC
TACGGCGGGATGATTTGCTAAACAGGGACAACTGCATTGGCCATGGGGAGCTCATGGCGT
AGCCAACAGGGCCAGACGGGAGCTCAGCCATGGCGACGAAGTCCCAAACTTTCGACACGC
TTCGCCAACGTGGGTCCATAAGTAAGAGGACCTATAACTAGTTAGGGATAAGAACTGGAA
GTCAATGTATTTTGAGAACCCAACACTGGCTTATATAGGCCAGACTTAGTGTTGATGTTC
ACGAATAACTCATGACAGCACTATATAATATATCTGTCACATCGCAACATGTCTAACATC
AGAAATATATTTTGTCTGGTCGGCTAACTAGGGCCCACATTTTGGTGGTGTTCCACTTTA
AATCCACGCTAGCACTAACTACAGAAAGTTGGCGTACCAATTCGTCCAACGCCATTGCTA
TTTGAAAAAATATGTGTTGGCGTCGCGTCAAATTTGGGCGGCACCAACGTAAGTTTTGCC
TAGCCATTTCTCCACTAGTGCTCGGACTCCTCGGCGGGGTCAGGACTGTCATTGGACAGG
GCCACCTTGGCCCTGCACGACACTTTTCAGGACAAGGGGAGGCAGATCCTCCTCGACATC
ATCGGTCGCCGCCCTTTTCCTTGTTCGGGAGGAGTCGCTCTCCTCCCCGTCCTCTCCCTG
CTCTCCCTCAAGAATAGAAAGGGCTTGGGTATCCTCAGACCTAGTGCCCAGAGGTCCTGT
TGAGCGGAGACCTTCTTGGGCCTCCCTCTTCTCGTTCTTCTTCTTTTCTTTCTTCTCCGA
CGCCTTGTACAGCTCCTCGATCAACATCTTCATCAGCAAGGCCGTCCAAGGGCCCTCGGG
CAGTGGGGTTGGGCCATCGATCTGCATGGCTTTTCGTAGCCAGCCCTGCAAATATGGGGA
AGAAAGGGTCAACTTCCTAGTTAAAAGGCATTGCCCGAACATAAGAATAAAACCTTGTGG
TACCTGATGAGGTGGGTGTGCGAAGTCAAGACCATTGTCTTCCTCCTTGGACGGCCAGTT
CTTCTGTGACTTGAATAGCACCTTCCACAGCTTGTCATGGGTGGTGCAGAAAATGTGGAG
CGCGGTAGCATGGTCTTGGGGTTGTCGGGCCACATTGGGGCGGCTCGCTGCTGACAGGGT
AGGAGGCGACGACAAAGCATGATCGAATCACGTTGGTCAGTTCGATATTCTCCTCCATCA
TCTGTGAGACGTGCTTCTGCAGCGATCTCACGTCCGCTGCCAACCCCTAGTCGACACCAA
TCTTGATCCACGATACCAGCCTTGTGAGGGGTTCGGATTTGAATTCGCAAGGTGCTTCCT
AGTCCGCGTCGCATGGTTCGGTGATATAAAACCACTCTATTTTCTAGATTTTGATGGTAT
CTATGAAGGTACCTTTTGGCCACTCAACCCAGGGGAGCTTTCTAATCACCACACCCCCAC
ATTCTGCATGCTGGTATTGACTATCTTTGGCTTGACATTGAATACCTTTAGTCACAAGCC
GATGTGTGATTGCACACGTAGGAAAGCCTAGTAGACAATAATGAAAGCCAAAATATGAAA
AAAAAAAGTTCGGGGGTGGGGGGAGATCATGAAAGTCCAATCCGTACAAGAACATCAAAC
CCTAACATAGGGGTGGAGTGGAAAGCCAATTCCCCGGATGAAGTGGGGGACGAACACCAC
CCTCTCTCCTTGCCTCAGTGTGGGGATGACTCGCCCTTCTCCGGAACATGATGGACGACG
TCGACCGGAAGATAGCCGACGTGCTTCAGCTCCTGGATGTCATCTTCAGTGACACGGGAG
GCCTCCCACTTTCCCTTAGAACTGGAGTCGGCCATGGCCGAACTAGGAGATGGCTTGAGA
ATGTATGGGAGGAATGGATCTGGGCGTTTTGGGCTCAACATATTGGGAAGATGATAGCAA
TGGAGATTTCAGAAGCGTGTAGAGGCTTTGGTGGTTGTTTCCCTTTTATAGGTTGTCGTA
ATACCAAGAGTGCTTTTACTGCACCACAGGCCTCTCCACTTCCCGATATAACTGTGTCGT
TAAGTGCGTGTGGGATAACCCAAATCATTGATCATATCCCTTAAAAAGCGGGGCACAATC
TCCATATTAAAGGATCGCACCAATAAAGGAACTGCCTCGAATCATGAAACAAGTTTTCAT
GACTGGTCAAAGGATGTGACCGGCCTTTACCTTTCGCCAAAAGTTATCACGTGAAAGCAT
TGCACATACTCGAGCAATTGGACCTCAAGGTTAAGCAACACATAATGTTCGGAAATCGGT
AAGTCATCGATGACCGAACTAGCATCGGTCGAACATAAAAGGGGAGAAGAACTTGCCCCT
CAAGCCGGAGACTTTGGACGCATGAAGCTACGGGGAATCATGGACCCCGGCATTGGAGGA
TAGTTCATGGGTTAATAAGGGAGTCCAGGACTAAGGGGTCCTCGGGCCGCCGGCCTATCT
CTTATGGGCCGGGCAGGTGGGCCGCTCTTTGGCTATTACTTGAATACCAAACTCTAAGGC
GATCCCGTGTTCAGGAAGGAAACCTATGTTTCTTTGGTGTGTCCTCCAAGTCGGGATGGA
AGAATTGGCGTGTTTATCTCCCTTATGGGAGCCGACCATATATAACCCTAGGTACCTCTT
GTGTCAAAATAATAGAGGGTTTTAGTTCGTAGAGGACAAAACGACCATTTAGGGTTTAGT
TCATCTAATCTCGTGGTAGATCGACTATGTAATCATCATACACCCATCAATACAATCAAG
CGGGACATAGGGTTTTACCTCTTCGAGAGGGTCCGAACCTGGGTAAATACTGTCCTTGTG
CTCCGTGTTCCCCATTGATCCAAGATCCACAGCTAGGGACCCCCTACACGAAATCCACCG
GTTTTGACACCGATCATCGTCGTCTCTATGCTTCGCCAAAGCTCATGTGATTATCTGAGT
CGTCATTATAGTATTTGATATAGGCTCATATTTGAAAACTTATGGCCGGATGTAGTAACC
TACCTAGGATAGAAGCAACACCATGATGACGACAATGACCATCAAGGTTTTCAGCCCACT
ACACCTCACTGGATGTGCATCATTGCATGCTATATGTTGGTTTGCGAGTTCAAACAGGGA
GTAAGCATCCTCTGCTTCCTCCATGCTATCATACGCTAAATAGGAGTTGTCTTGGTAACT
GTGCACTTGTTCATGACATGCATGCCATGAAGCATACACTCTAGGACGCCTCCCTCTATA
GACCACTATACTCCTTAATCTACCGAGAATAAATAAAATATTTCAATATGCATGCAGGAA
AAAAAGACAAGGTTGGTAGAACACATGAAACGTAAACGACATAATCATTCATGATTCATA
TGCCCCCAAAAGCATCAACCAGTGCAACTCAAGGTCAACATCACCATCTACATCGCACTT
CTAACTAGAGTCCTACAATGAAGCTTTACTCTCAGACATAATCGGAGAAACCGCTCATCA
CAGAGTTGGAAAAGCTGCGGATGCCCCCCACTCCTCCTCCATGGAGGAGCCAGCGTCCTC
AACATTGGCGGTCGGCAAACTGAATGGGACTAGCTCATCACTCACCTCCACCACCTTCTC
TAGGTCGTCGAGAAACTTCGTATGCTCAGCACCGAGGCGGACCATCGAGTTACGAATTAC
AGCCGAGTTCAATTTCGGATCAAACTCGACAGATGCACTCGGCGAAGAATTGGAACTCGG
GACAAAACGTGATTCTAGTAGTGCCAGCTTTATGGTCGGGTGTTGTCCCTACCTTTGCCC
ATGTCTTTGTTTCCAGCAATCTTGCTCGGCTCGTTGAGTGATGGAATGAGAAATTTCAAG
GTTTAAATGAAATTCATAGCTCTCTTTGTTTCAACTCATAAGGAGTTGCTACAGTTCTTC
ACTCGCGTCGTTCGTCAACCTCCTTTGCAAAGTAACCTGCCTCGCTCAGTCAATTTTCAT
TTCACTTTTTAAAAGCAAGTTCTACTAGTCGAAGCATACAGGTCACCAATAACTCATCTA
ATTATTTTATGGATTACACAAAAGGAAATACTCTCGTCTAGCCGGCCGATCTCTTTGCTC
ACGTCCATCGTTTCCATTGTTGTTGGATCTTTTAGCTCGGCACCTGTTTCATGGATCTTT
TAGCTCGGCATCTGTTTCAAAACGCGGATCGCAACAAACGATCTGTTGCAGAAACTTCTG
CAACAAGACCTTTGTTAAAAAAATCATAACAAAACAAAGCAGTTTTTTCCGCAACACGAT
CTTTGTTTCTGTAACACGGTCGTTGTTTTAGGAATTATTCCTGCAACGTAGGCCGTGTTT
CAAGACTTTCTGCAACGTAGCCGTTATTTCTGTAGCGCGACCGTTATTGCAAACCATCGA
ACACAACACAAGCCTTGTTGCAAAACTCGCTAAAAGATGATCGGACGGTTAACGAGCTTA
CAATCCTACGGCTATCAAGGTGGATGATGTTTTCTAAACATCTCCCGACAGATGCGTAGC
AGCCCCTTAAACAAATGCAACAATTTGGTTAGGTCTAATAGCTAAATCAGGATACCTATA
GTGATAGTTATGCACCAGACAAAGGACACATTTACTGATGCCTGGTCTAAAAAGGACAAA
CAAGTTCACGGATACAAAAGGTGGTATCCGATAACATGCTGGGGTTACCAGCTCTCTACT
ATCAAAGTGTACAAATTTCATGGAAAGTCATGCTAACAAGAATTGAAACAGAGATACTGC
AAGAACAGATCACTCTAGCCTACGCCGCTTGGACTCAGATGTGTTGCCGCCACCGACTTC
AACTTCAGTTCGGCAAGTCAAGACTGGAGTGGCATCAAGGATTTCTCGATTTCCTCCTGC
GTTTTGCTTCTCCACAACATCATCCGCAGCTGCAAATAGATTGATGTCGCATAAAGATAA
CATGATGGATAATTAGTACTAGTACCGAGGGCAAGTTCGAACTCAGTTCCAGTTGAGGAT
CTCCTCTTTTGTCACAGTAATGGAAGCTGAATCAAAACAAAAGCGCAGGAGCTAGCACAT
GCACTCTTATAATTATTACACCCTCAGTTCCAAAATACTTGCCGTGGTGTAAGTTCAAAT
TTAAACCAAAACCACGACAAGTATTTTAGAACAGAGGGAATACAAACAAAAACATCTCCT
AATACACTAATATGTAGTAGTTTAGTATTGCAACAAAAAGGGAAGACTAAAATTGACGAA
CCCAAACTCTTCATAACAGAATACAGTGACAATTTCAATTATAATAGTACTACCGCTGCT
CATTAATAGAAGACGCTTTGGCAATTCAAATTAAACTGCCAAAACGTCTTACATAGTGTG
TACATTAGAGAATAGAGTGTACCTCCTTAAACATATAAACATATTCCACAGAGTTTGCAT
GTATACGATGAATGGCAACATAGTGTCTTTATAAATATAATCTAGCTTCAAGCAACTGTA
TGACAAATAGCAGGTGGTCCTTATACTACTACCTACTGGCACTACAAGTGAGAAACATAT
TATGTTTCAACAAGCCGCAGACTGATGTATGGATTCCTAGAGCCAAATTTATCAGAAATG
TCTGTGTATACAATGAAGTTCAACAGATAGCATCTTAATTTGAAAATATTAAACTAATCC
ATATTTTCTTTTGCGGGGGAAACAGACATCTTCAGTGTTAAGCTGCATCTTACAACCCAG
GAAACAACATGAAAACTATGGAAGGAATACCATATGACAATTTACTTCCATAGTGTTGCC
TGCATCCTGTGCATAAGGCTTGGCAGGAAAGGCCATCGCCAAAATTAACGGATACAAGTA
TGCTTCTACTATTTAGAAGAAGAAAACTAGAACCCACTGGAAGTGTGATCTAACAGCAGA
CGGTGCTTTACTCTACGAAAATCGAATTTAAGCCCCTTACAGCGTCGCTATATTAAAACA
AGCTAAACTAATTAACACAGCCTGAAATTTCCAACATTAGCATCCCTTCTCTCCCACAAC
TTAATAAATGTTGATTTAATTCAGTATATGTTACACACCAATATACCACCAAGACACTAC
ACATCTCTCGGATTGTTACACAGAAAAACACCATTTCGAGTCACTAAACAATTAGTAGCA
AGAATCTATACAAAAGAGGGCAAACGATATAATTACCTGAGCGGAGAGCCGGTGGCAGCC
TCCAAGCGTGAACGAAACGGGTGGCAATGTGTTCGCTGGATAGCTCCTCAACCAGCTCGT
AGAGCTCACACTGCACGACCTCGCGGTCAGGCACGTCGACGCCGAACAGGTGCCTGTCCA
GGAAGAAGTAGACCACGTCGGGGTCCCTGGGATGGATGAGCGCGAGCACCGGGAGCTGCC
TTGTCAGACGAGTCGCCTTGAAGCTCGCATCATCATAGATCTCCGAAAAGGTCGCTTCAT
ATTCCAGCGTCCACTCGGTGGAGTCCGGATCGGCGAGCGTCCACACGCTGATTTGTGCAG
AGCCGAAGCTGTTACGATTCTTGTACAGGTCCACGAACCGCAGCTTGCCGCGGCTGACAG
CCACGCGGCGGTACTTGTCGAGCACTGCACAATCTTCCCTGTACTTGAGCGCCTTGCGCG
GCGGGAGTGGGACGAAGCTGAGCACGGGCGCGTCCGCGAAGGGGTTGCAGGTGAGGAGGC
CCCAGGAGAGGTCGACCCACCAGAGCCTCCCGGAATGCGAGACCACGCCGTTGGGGGTCA
ATGGCCGGGACGGAAGCGGGTAGGGGACGCTCTTCCTGACCCACTCCCCGGATTGCGAGG
AGAAGCAGAGGAGGTCGGCTTGTTCGCTGCCGGCGATCGGCTGGAGCTCAGCGAGCATGA
AGCGGCCTCCACCCTCGGGGGAGGCGATGAGGCCGAGGCGGCCCGGGTTCATGATGTGCT
CGGAGTTGGGGACTGGGAAGGCCGAGGCGGATTTGGAGTCGAGGACGAAGTAGCCCGCGA
CGAATGGGCGCCAGCAGACCTCCTTGCGGTCGGGGAGGTCGATGACGGCGGGGCCAGCTG
CGGGGCCCTGGGAGGCGTGGAGGAGGATGAGGCCGGAGCGGTCGACGGCGACGACGGAGG
GGAAGTTGTCGGAGGTGGTGCGGCCCGGGAAGATGCGCGGGGGGATGGTGAGGAGCGCGA
CGCGCGGGGGCGCCGGCAGCGCGAGGGAGAGGTCAGCACCCAGAGGAAGATCGGCGTCGG
CGGCCGACACCTTGGCCACGCGGCCCAGGATGACCCACGACGGCGA