morexGenes - Barley RNA-seq Database

Contig contig_57338
Source Contig contig_57338
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57338 (7003 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_57338

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70044	6	3160 bp	MLOC_70044.2	Available	Available	LOC_Os04g55570.1, FRAME:-1, EVALUE:0.0, 13104.m05765 protein plant protein of unknown function DUF869 domain containing protein, expressed
MLOC_70045	1	237 bp	MLOC_70045.1	Available	Available	None
CDS Structure of MLOC_70044

CDS Structure of MLOC_70045

Contig Sequence (7003 bp)

>contig_57338 7003 assembly3_WGSMorex_rbca.fasta
ATACTGAATCGTCACCTCCCTCGTCGACAGAAAATTTTCTTTCATGTGGTGGCCTTATTT
CTGAGCATATAATCTCCTTGGTTTTCGGGGAGCTGAGGTCATCAAATCCTCCATCGTCAA
CGGCTAGCATCTCATTCAGTGACTGAGACCGAGGTTTTCGCTCTGGACGGACCGAGGTGG
CATCCTTTGGCGATGCAAGTGCTTTTAGTTGCTTTCCCAGGCTTAGGATTGTCTCCTGAC
ACTCAATGAGCTTCTCTGATGCTGTCGAGATCTCCAGCTGCTGTGTGAACAAGGGGATTA
AATGTTAACTTTAAAAACTTATTTACTGGTAAACTGTCCAAACCAAGGTAAGAACTCATG
GACTAAAGAGCCATTCGAAGAAGGGTGTACTCAAGAAACCAGCAAATTGATTGAATGGAT
CTGAGAACATGTTCAATTCTTTCCAGTGGTCTCGCAACAAGGGCAGTCAAGGTGGTATTT
TGCTATCATATACTATGATCACAATTTTGCAATATACAAAATGGACATAAAATTCCTTAT
TTCCTATTTAAAAAATAGACTGCCTATCTTTTTACCGGAGTTACATTTGAGGTTGTATGC
AACTCGGGTTGCTACACAAATGGAAAGAATGCTATATAGCTTCGCAAATGGAAAACTTGT
ATACATTATAGAGAAAGGACATCATCAATATGGAGAAAATTTGTTGCATAAGACTGTAAA
TTCAAATGTGTATTTTCTTTCTCCTAAAAAGAGAGCTAAGCAATCTTTAAAACAACAAAA
TTCAACAAATAATATAGTGTGGATCTTACCGTGTGTAGATTTTCGTATTTATCCCCAGCA
ACAAGTTTTGGGTCTTCTTCAGTAGAGTAACTGCCTCCCTCTAGATTGCCCTTGTTTACC
TGAGACTTGGCGATGGATTTGTGTTTGTCAAGTTCAGTCACTGTTGATTTACCATCATCA
CCATGTGCTGCCAGATTTCCTGTTTCTTTCAATGCATTAAGTTCTGCTCGCAAACTTGAA
GATTTTCCTTCCGGTGCACAGAATTTAGAGAATGACACTTCATTCCTTATACCGTCTGTG
TCATTATCAGCTTTAGGTCCAATATCCATGGGGCTTGATACACAAACTAGTGACATCTGC
ACGCTGTTTGGAGTGCTGGGTTCATCTATGCCATTTATGGTTTGGACTCCTATTTGTTTG
GCTGCAACAGCTTCATGCCCATCACTGCTATCTAAATCCAAATGCTTTATGATAGTTTCC
CTCATCTCTGATACATCTTGTAGTGAAAAGCAGTGGTTCAGTATCCAATCTAGTGTGAGG
CTCACTTCAAGAACAAATCTTTCGACATCAGTATTCCCATACAGAAGCTCATTGCATACG
ACAATGAAGTGTCGCAGTACACAAGTAAGTTCCGATGTTTTCCATAAGAATGCATGAGCG
AAATAACCAGTTATCAGTGTAGATTGATCACCCATGTTGCCACCAGATTGCACGAGGTTG
CTACTGTAATCCTTTGACGATCTCTGAATAACTCCTTCGACAAGTTCAATTAATTTCAGG
AGTCCCTTCTCAGTCTTGCGCAGGTGAACTTGATTAGTTGTCTCATTGGGACCATCAACT
GGAACCAGCTCTTTACCTGCTGATTCTATTGCCTCTCTCTTCACATCAGAGGATTTTGAA
GGCTTATCATCACATACCATAGCTAGCCTTTCTATTTCTTCAAAGTCATCCATGAAACTT
AAGTCTGACATTCCTGTGCTCTTACAAGAAGGTGTAGTCAGCTTTCCCTTCTTGAAATGT
TCAAGTTCAGAAATCAAGGCTGACGCCCATGAACCTGAACAGCTGACATTATCTTCATTG
CGACCACCCTCAGAGATAGATGAAAGAGAATTTTCAACCACTGTAGGACTTCTTTTTACC
AGTTCTGTGGTAGCTCGATCACCTGATAAGTCTTCGAGTTGAGCTTCAACTTGGGAAAGT
TTAGAGGTTGTGCGAGCAAGCATGGTACGTGAAAGCTGAAGTTCACCATCCTTTCTAGAA
AGAGATTCCTTCATGGCCTTATTTTCATCTTCCGTCACGTGTAGCCTTGCAAGCAATGAA
GGACTTACATGTGATGCATTGGAAGTGTTTTGTATCTGATCATATGAATTGAAGGATGAG
GTAGAATTCAACTTTCCCGCCCTTATGTGTGCTGTACTGCTGCCCAGTGTCTCAACTTCA
CTTCTCATTCTAGCAACGGCAGCTGGTCCTGGTAGCCTTTTGCGCATCATTGAGCGCAAT
CTCTTGCATTCTTCTTCTAGCTTAGTAATCTTCCTTACGTTTTCAAGATGTTGTTTGTGT
GAAGCATCAGCAGATTTGAGGTTACATTTCCTTTCCTCACTACGAATATCAAGTTGCTTC
TGCAGCATGCAAACCTCATATCTAAGAGAAGAATTTGATCGCTCTGTTGACTCTAGTTTT
GCTCCAAGGTCCTTCAAGTCAGACTCTTTCGCTGCATTTGATTCAGTTAGATCTAAGATG
ATTTTCTCTTTTGTTGAGAGGATTTCAGATAGTCTGTTGTACTCATCATCCAGGCTAGCA
ATTATGTTCTCTTTCTCAGCAACATTTTGTTCCAGATTCCAAACTTTATCCTTCTCACAA
GAAATTATTTTAGCAGTGTCCTTCATCAATAACTCCCTCTCTTCCGCTGCAACATTTAGA
GCCTCATCAAGCTGCCGAATCCTTTGCTCAACCATGGCTTTCTCATGTAGAGTATCATCA
AGTTCTGTCTTGATAGCTATAGCTTCAGCCTCTGCTTTCTCCCAGCCTGAAACATTCGTA
ATCAAAAAGGGGTTGGTCAGAAAATTAATAGCCGACATATATGCATACATGCATGTGGCA
TTTATACTTCTAGGATGAGATAAATCATATGCCCAACTACTTATGACCAGGAACTTGTAC
TGGAATGAGAGTGATGAATGGAGTAGTACCTAGTATGGCTTCTTCAGCTACTTTTGCTTG
CTTGGATAGAATAGCATCCTTCTCGAAGCATTCAGCATGAGCAAATGAAAGTTGTTCATT
TAAGCCTTGCAGTGATCTCTCTAGCCGTGCAATCTTCTCCTTTAACACGAAAAGAAAAGT
TGAAGCACTTGTTATGACTTAATTAATGAGCACTGAAACTTCAAACATCTTAATGTGTAG
AACTGTAGATAATATACCTCATGTTCCTTATCATTGGGTTTGTTCTTTACTGAAACTGCC
CTTTCCGACGCTTTCTTTCTCCAAAGCCATGTTTTATGGTCCATAGATAGATGCTCTCAC
TTTTTACCAGTATAATCAATGAAACAGAAGATACCCTAGAAATTAGAAGTAGATGCAACA
TTAGTGGTGCATTTTTATATCAATTCATACAATATACTTTGGTGAAAAGAATCATAAAAT
GTATATCTGGTTCAACTTTGCAAAGTTGTTCCTAAAAACTATACAATATGATGCCAAGTT
TCATCCCCCCACCCCCAGCAAACTCGCAGCCTTTAGCACTAAGTTAAGGACTGATCCTTT
CGACAAACAAAGCAAACATCTCAGTATCATGTTTGTTTCTACAAAATTTGCAATTGTGGT
TACCTAATCCACTGGGCAGGACTAACACTTTCTACTTCTGCCAGCTGCAATGTCCTTCAC
TTTTAGAGATGCCGATAGCGACACTTAACTAAAAAAGCAACCACAAAGTATATTGAGGTG
TTTGCTCAGTTATATCCCCAGTGCACCCACCACTTGCTCCAAAAGGTTACATTTGTTAAC
CAAATGTACTATATTTCCTTCCAAAAGAGAGAGTACAAAATTAGCCATGAGATGCTAGCT
TCTTCCAGAACCCAAGTGGGTGGCCGTCCACTAGCATTGCATCGATCCACAACTGTGAGA
GCAACCCAGCAGGGAAGCCATTTAACACCGGCATCTGCATAGAGCATCTATCTAATTAAG
TAAGCCAATTACGCCGTCCCAGATGTCAAAATTGGTAAAAGTATTGCAAAAATAGCATGC
AGAGAAAGGGAAGTGGTTCTCCCCTGCCTCAACAACATCACTAGTAAGGGAAGCACTGAG
TGCTTCTCATCTGTCTCAACAGAATTACTGGTAGTACCACACAACACAGGCGCATCCATT
GATAAGGATGGCGCCTAACGCAAGTACTCTTTTCGGCAACCACAACCCGACCTTTGCTAA
CCAATTAATGAATCCGCTACACTAACTGGGAATCAGGACCAAGCTGACACTCTCTTTGCA
CACCCCTTTCTGCAGATTGGCAAAGAGCAGACCGGCAAGGATGCGGAAGGAAGAAGCCTC
ACTGGAAATGCCCACACAAGAATCGCCTGTGCGTCGAAGCAGGGGAGGAATCGGCGCAGC
AGCCAGCCAGAAAACCTGTGGGCATGCAAGCATCTGACCATTATTAGCAAGTGCAGTGAA
GCAGCCGAGCCAAACCCATCGCCATCGATCCCCCCCGGTACCTCCAAACCGGCATAACCC
CCTAGCTAAGCTCTACTCCAGAGTCCAGATAGATATCCCCATCGTTTTCCCAACCACCAA
ACATGGATTGAGAAACACATACACAAAGGACAAGGGCGGCATGGATAGATAGAACCGATA
ATAAAAGAGAGAGAGAGAGATTGGAAGAACACAAGGGATGGCAGCGGCGAGCTGAGGACT
GACCTCCGTTCCAGTGAGTGAGTGGCAGTGGCAGTGGCTCTGCCGCCGCTTGCCAAGAAG
GGACTGCAGTGCTGGGTCACTCACCTGTGACTCTGTGGAGGCATCCTATGGTGTGGATGG
ATGGAGGGAGGAAGGGCGGGGGGTGGCTGGTGACTGTGCGAGGACAAGGACACAAAGCTA
TCGCCCTCGGCTTTTTCTCTGGGGCAGGGCCTGGGTGTCCCTAGCAGAAAGGAAAAGGTG
TTCCTGGCTGGGCCCTTGAGACGACAAAATTGCTACAGGATGACAAAAAAGGCTGCCTCA
TCTCGTCAGGGATTGTGGAAAGATCGTCGTGAGGGCGAGGCCGTGATCGACGGTGGGTTT
AAGTGTCGGCGGTGGCGGTAGATACATACGAGTTGCGTAGGGGCGACGGCGTTCGGATCT
CCATTGATTATCTCGGTTGGGTCATGGTGCCGATTTGGTCCTAGCACATCTGTTTTTTCT
ACTGTACAAGTCGCTTCGTTATATCTTCGCAGGAAAGACAGTGTTGTATTAAAAAAGACT
TTTGCATTTACTCTTCGTCCTATAATAAAAAAAGCCATCAAGTGATCAGCTTGATAAGCT
ATCAACAAAAAATGCAATCAACTATAATAAAAAAAGCGTATTTAACAATACTTGCAATCA
ACTATAATAAAAAAGCGTATTTAACAATACATTAATATAAAAAAGTTTTTATATTGTAAG
ACGGAGGGACTAGTAGATTAGACCAGAAAAGATGGACGGCCCCACTGCCATGATGTTATG
AGCTATGGTGTCTCTTCATCAAGTGTAATTGTGGGGCGATTCACATAGAAGTACATGGAA
CGTTACATTTGAACCCCTCATATCCGTCTTAAATGCATGGAAAAACTGTCCGGTCACTGA
TCGGTCTTAAAAGTCCGATTCAGCCGGACTCCTCAAACGGACCTCAAATGTCCGATCAGA
CCGGCACCCTTCATATCCAGGGACGGAGCCGGGATTTCACCATAGGGGGCGCGAAGAACA
CATTGAAAACACAAGAGACATAACACAAAAATATTTCAAATCTTGAATATTATAGAAATT
TCAAATATTTAACAGTACAAGCTTTACGAAAAGAAAACTACATTTCTACTAGTTTGAATG
AAGATCTACGCCCCCCAGCTGGTCGATCGAACAAATCAATAATCTCGTCAACATTGAAAT
TTGCAGCTATTTTCTTCCCAATGTATACAACCATGTAATGTCGAAGAAAATCGTCACCCA
TTTTACTTCGGAGACGCGTCTTGATAATCTTCATTGCCGAAAAAGCTCTCTCCGCGGTTG
CAGTTGACACAGGGAGAGTGATAACCAATCGCAATAATCTATCAACCATTGGATACACAG
AAGCTTTACCTGTTTTATGCAATGCAACGGTCAAATCAACAAGTGATGACGAAGATCTCA
GCTCTGGATGGTTGCGAACATCTAACTGATAGTGTGGAAGTTATGACTCCAGGTGAGCCT
GCTCTTGACTAGAAAATCTGTTGGATATAATTTTTCCACAAGCCTGCAAATATTCGACAT
GTCAAATGACTCATGCCTTGGATCCAAGGATCCGCAGAGTGTCATAAGCTCTGTAGTCTA
AATGCTAAAACGATCATTCAGCTCAACAAATTATTGATCTATCGCCATATTGAACACATC
TGCTTTATAGTGGTGAAGCACTGTGATGTTTTTATGTTTATTTATAGACTTTGTCACATC
AACATACCTACAAATTACAAATACAATATATGTGTCAGATTAAAGCATCTGATTAATATT
ATTCCATTATACAAATAGTCGAAAGGTACATACTTGCGAGTCATATCAGGGACTCAACTT
CGTGCTTCACACAAAAGGTCTTAACCTCCTCGACGAGAGGTTCCCATCCTTCTTCTCTTA
GATCAGCGAGGAGCGCCTTCGTGTTAGAGAGTGTATCTAATGCATTCAAAATGTCCAATG
ATTTACTTTGGAGTGTTTGGCACAAGACATCTGTGATTTTCATAATCCTCTCCATGAGGT
GCAAAATAAAAACAAAATCAAAAGAAACAATTATCCTTAGGACGTCTCCATCATCTCCAC
GGGAATATTGTGTGACCGAGCGATCATTCGCTGTACTTTGTAGGACTATAACTGTAGCAC
CAAACATCTTCCTTAAGCTCTGAACTGACTTAAAGTGTGAACTCCATCTAGTGTGTGCTG
GTCTCTGTAAAGAGCCTATCTGGTTTGCCCCTTTTCCCGTATCAAGCTCCCCTAGTTCAA
TTTCACGTGCAATCTTGGCGGCTTGATTTGCTAGTAACTCATC