morexGenes - Barley RNA-seq Database

Contig contig_57313
Source Contig contig_57313
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57313 (7325 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_57313

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_70022	4	5501 bp	MLOC_70022.3	Available	Available	LOC_Os03g42040.1, FRAME:-2, EVALUE:0.0, 13103.m04524 protein HEAT repeat family protein, putative, expressed
CDS Structure of MLOC_70022

Contig Sequence (7325 bp)

>contig_57313 7325 assembly3_WGSMorex_rbca.fasta
TGGACAGGGGTGCGTGGAAGCTTGCTATNNNNNNGCCAGAACCATGAGTTGGTTGCGAGA
TCTTATGGGTTTCACCTCTAGCCTACCCCAACTTGTTCGGGACTAAAGGCTTTGTTGTTG
TGTTTGTCCGCATAATCTGAATTTCTGGTATAGGTAAAGCCTTCTCAAAGTTTTTGGCAG
GCATTTGCTCCCTAAGTTTATCTTAAATTGCTTTATGCATTTATGCAGGTGGCGAAAGAG
AGCGCTGATGTCGTGATTCTGGATGACAACTTCTCCACGATTGTTACTGTTGCGAAATGG
GGACGCTCTGTTTACATCAACATCCAAAAGTTTGTGCAGTTCCAGTTGACCGTTAATGTC
GTTGCATTACTAGTCAACTTCTCCTCCGCATGCTTTACAGGTATGTCCTACCCATGATAT
TGTTGGTTTTAACACGTCTCCCATCTCATGGTCTACTACATAATCATGCCAGGAGATGCG
CCGCTGACAGCTGTTCAACTTCTTTGGGTCAACATGATCATGGACACCCTAGGTGCGCTA
GCACTTGCCACCGAACCACCTAACGATAACTTGATGGAGAAAGCACCCGTAGGAAGGACA
GGTAAGTTCATCACAAACGTGATGTGGAGAAATATTCTGGGGCAGTCGTTGTACCAATTC
ACCGTCATCTGGTACCTACAAAGTCAAGGGAGATATGTGTTTGGGCTTGAAGGCTCCGAG
GCTGATACTGTCCTGAATACAATCATATTCAACACTTTTGTCTTCTGCCAGGTATGCCGG
CTGTTGTATAACTGTCTCCTTTTTCGCCGTTGTTTCTTCTAAAGTACAAGGGGCAGAAAG
GAGTTGATAAATACTAGAACCAGATAAGGGTGGAAGGAAATGGGACTAGGATTATCATCA
TATGGGTCGAGTATTATCATTTAAAACAGTGAAGAGAGAAGAAGATATAGCATGGCGATG
GTAATAACTACTCGTATTATTTGATCTGAAATGCCAAGAGAAGTGGATAATTTCTTGCAG
GGGATTACTAGATGTGAAGTGGAATTCTTTTATTTTTCTCCTTCATTCATGGCTCCATTT
TAATCTGCATCTCCGTAGGTGTTCAATGAGGTCAGCTCAAGAGAGATGGAGGAGATCAAT
GTTCTGAAGGGCATGTCGGAGAACTCTATTTTCGTGGGCGTTCTCGCCGGCACTGTCATC
TTCCAGTTCATCCTGGTCCAGTTCCTGGGCGACTTTGCCAACACCACCCCGCTGACCCAG
CTCCAGTGGCTCATCTGCGTCCTCTTTGGCTTCCTTGGAATGCCCATTGCCGCCATGATC
AAGCTCATTTCCGTAGAAGAGCGTGAAGAACACGACGATTATGGAAAGCTGTAGGCTACA
TCAGGATATCCGCAATGCATATATCATGGCAAAGCCGATGCTGGGCAGTGATTTGTCATG
TTCATGGAATCTGAACAATAGTATTCCGTGACCCAAGAATCGAAGATCAGCATCATACTG
CGAAGAAACATCCAGACACAATGCCGCTTCCTGCGTGCCTCGGATCAGACATGCATGCAG
TGCAGATTAACCAGCTGTCCTTGAAAACCGAGGCAAATACGTAATAAATTGCCCAGCGCA
AAATAACTTCCAACTTCATACAAGTACGGCACACTAACTCTGCGTTATGAGGTTTGAACT
GGTGTAGGGCGTAGACCTCACGAGATTGTATATATGTAATACACTACTATTGTCACACCA
ATCATTACAGTGATTCATTCATTGTTAAAAGAAGTTGATTTGTTCCAACAAATCAGCAGC
TTAATGCTTGATTACATCAAATGTTCCAGCAACATACATGGTTTATTACATGATTTGGAA
TTTGTGCAATTGACGACTTCTGTTACGTAGATGTTTAGCGCCTTCCCAAACTGCAACGAA
GTGAAAGGACAGCTGGGTCTCGAATCAAGAAACCAACAGCTATATATCTACACAGAATTT
CTCTCAGAAACGCAGTGGTGCGTACTAGGTCCTTGCCGGGTCAACCAACTAACTTTCCCA
CGGCATCAGTCAGTTTGTCTGACTGCATGCATCATAGGGGAGCACTGACTGTATCAATAT
TTTTGCGCTCTCCAGCTGCTGCATTGAACCTTCATCATCGACAAGGCCCTCCCTGCAGTG
CCTGTCGATCTCAAAGAAGTTCTCGCGCAGAGAATCATGAGTCAGCTGCAGGTTCTTGGT
GGCTGAGGAGCTGCTGCTGCTGCTGCTGCTGCTGCTTGCAAGCAGCTTGTCACAAACAAA
GCGTGCCAAGCCTAAGACGATGCCATGCTCTGCTCTCCGCAGCGCCGACAGGAGGTTGGA
AAGCAAAATGCCACCCAAAGAATCCAGGATCCTTGGGCTTCCTTTCTTCAGCAGGGTCAC
CATCATTTCTGCTAGCTTTTTGCATGACGGTGACTCCAAGTGCTCGTTGCCCTGCTCGCT
CTGATCATCCTCCCTAGGTCCCTCAGCCTCAAACAGCTCATTCTTGGCCAGAGTGGCAAC
CCACAGTGGTAAATCAGAGTCACCGAGGTTGCACGTCTTGTTATCCATCTCGCTTTCTAG
GCCGATCAACCAGCGGCATCCAAGACCCAATATCAGGACTGGCAGCCACTCTTTTACAAC
AGAAACTAATGTGAGAGCAAATCTCGAGCCTGCAAAGGATTCGACAGCAGGTACAAGATC
AAGAAGATTATTGGCAAGGAGGAAGGCCTCCTCTGGGGGGCTTGATGACTCGGTTGAGCT
TGCTAGCACCAAATGAAGCAGTTTGGCTGCATAAGTGAAGGAGCTTCGTGTAAGGATCAG
TATGTCTTTCAGATCATCCCCATTGAAAGATGATCCCTCACTGTGCCTTTTCATGGCTGA
CACTGCATATTTTGTGTAAGATGATGCAAATCCAACACATCTTACTTTACTCTCATTGAC
CAGCTTGATGGTTGTCGTATCGACAATGAACTTAAGAATTGAAGTGCCAAGCATAATCAC
ATTCATTGTGCATTCCACTGAATTTCCTGCACAAGATGCATCACTTACTTATTTACTGTA
TGAGGTAATAAGCAAAATTATGCAGGGCTTTTTTCTACCGAGGAATTATGCAGCATTGAT
ACAATATGCACAGATGACGATGATTTTAAACACGAAATTTTTATTTACACTCTTTGCATG
CTATCAAAGCATCAGATACTCGCTTGAGTTGATGAATAAACGATCGATTTAAAGAGTGTT
ACCACATAAAGAGTTTGTATGGGTTTTGTTAAGGCATACCTTCAGGGGTGAAATGCTGCT
GATGTTTATGTTCTGCAGATTCCTTATTCTTGTTCAATGTTGAAGTTGAGTTGGTGGAAA
CAGTAACAGGTCCGTTTACAAATCTGTCATAGCATCTCAGCAGATGGTCCAGTGACTGGT
TGACAATTGTCGACTGACACAAGATGAAATTTACAATGAGACTAACAAAATATTAAATAA
AAAACTGAATAACATTCACACAGATCTATGGAAAGCTATCTAAGATAACAGTAGTGCGTC
GACGAATCATGGTTTTGTTCCTATTGATGTCTAACCAGATAAGTATGGTTTATCAACAAG
ATAATAGGTGTGGTGGCAGTGCACGAATCGACTCACCTCAGAGCAGCTCATGTCTGTTTG
ATCAACATCCTGAAGAGCACTATGTGTAGCCAAACTCAAATAAGTCGACACCGGAGTGAG
GTCTAGAGATTTAAAACGTAGGCACTGCTCAATGTACACTTGAGAAATGATCTTCAGAGA
AGAAAATGCAATTTGTGCATAAGATTGCAGAAAAGCAGCTCTCATTTCCTCAGCTTTTAG
TATTTCATTGAGCTGCCATGCTGCTCCCCCTACAGCAGCAAGTTCTTCATTACTCAGGAT
TACTGATGTGGATGACCTATTTCCAACCATATCGTCAGATCTTGCTGGTGTTTTCTTAAG
CGACTTCCCTTTCTTCCTCTTTGTAGATGCAACAGGGCACGATGGAGGTTCGAGTCCATA
CATCCCAGAAAAATAAGAGGCTTTAGATTGCAAAATATTAATCAATTCTTCAAACATTTC
AGCAGAACGGCCACTCATATATACCAACTTATGCGCTGCAAGCAATGTTTCTTGACATTC
TTCCTGCTTGGAAGTCACAGCAGCATTCACAATTATATTCATGCATTCAATGTGTAACAC
ACATAGATCATCAGGTGATACCAGTGGCACCATGCTGAGAAGAGCAGCCTGCGCACCATC
AGAAACTGCAGTTTTAAAGAGCAGCTTCAGTTTAGCATTTGCAAAGCACTCCCTCAAAGC
AACCAAACTAGAGCCCTCGTCAGATAAGCTTTTTATTAGTTTGGCGGAAGCAATAACAAG
ACCATCAGTCTGCTCTGACTTCAATCCTGATGGCGACAATGCCAGAATAATAGAGACTTT
GATAAACTCAACAAGAGACCGTGGTGATGATCCTTCAGACACAGCAAATTCACAAAACCT
TGCCCCAGCTGCCGGTGATCTCTTTATGAGTGCAATGCAGCGAGCACATGCTTCTTTCAA
AGGCAACTTAGATGGGAAGTAAGAAGGAATGAGAAGCTTTGTGATTTTTTTAGCAACACG
GGGATGATCATCTGCGAGTGAAGATAATAAAGTGCCCAGACCAACAACCTGAAAAGAAAA
ATGTGTATTAAACTCCTACCCAGGAAGATCCAAATATACACTAGCATATGTGCTCAAATT
GAAAGTTCTGTAAATGCAAAGGTCGGTTAGGCTACAGTGTAAATCAAGATATTCATGCAA
TACCTTATTGTACTGGAAAGATCGAAGATCACGAATAGCTAACAGAAGGTCTACAGCAGC
AGCTCTGACAGATACAGAGGGATCAGAAACCATATCGCTTAATCTTAGAAGTAGCACTTT
CAGTATGTCATGACTTTGTGGATTGTCAAGCAAGTATATCAGGCCATTCAGTGTTGATAG
ACGAACTTCGTTGCAAGAATCTTTGGACATGTCATCAACAATTTTACTCAGATTTTTTGA
AATGGTTGGCGATGGAATAACTTCCCAAAACTGGTTAAGAATACGGCAAATTCCTTCAAC
TGTGACTGCCCGTATTTCTGGGCAGTCGTCCATGAGAAGTTTGTCTAACAGGAAGAACTG
CTTCTCTAACAGAGGATCGTTAACATCCTTTGTCACATCTGGGTCTTCAAGGGGAAATAA
ATCCAGTAGAAGATGTAAAGCATTATGGCGAACATTAGAGTTTGCAACCTGCCACAAAGT
AGACACTTGAGATAACCATAAGAATATCTAAACTTGAAGTGTTCCATACCTACTACTCCT
GCCGTTCCTAAATATAAGTCTTTNNNNAGATTCCACTACGGACTACATATGGATGTATAT
GAACATACTTTAGAGTGTAGTATGTAGGGAGTATTTAGGAACAGAAGGAGTATTTCTTAA
GAGATATGTACATGTTAAAAGTGAAACAGGAAAAGTGATTACAATTTCCTGAGTACAAAC
TAAACTTGAAGTAACCCATTGAATTTAGTAAACTTGGCCAATGTTCTAAAAAGATGATAG
GTTGTGATGTTTCTCTCATAGGTAGAGCATAAACAGTGATGACCAGCTATGCAGCTTTGG
GAGTGTGGATGCGTTAACCGAAGGCAACAATATACATGATATTCTATCTATATAGAAACA
CGATACTGTTCAGTATGCAATAATCAAATGTTCATATGCATTGCTATTTTAGACATGAAT
AAATTCCAGTAGACAAACTGTTAGCTAGAGTATCACAGTACTGAGCAATTTCATTTTGTT
CAGAAACCTGATCATTGTGTAGACTCCCTTGTGGGAAGATTAACAAGCTAACATGAGATA
CAAACACTAAGAGGCTAAGATATCATGTGAAGTCGTGTGAAATTGTGGATGCTTTTGAAG
TTCAGTCATGTAACGAGTTAAACCTTTTTGTTTATTTGTTACGGCAGTAAGTAGTTTGAA
GCTCTGCTAACTACTGGTTTTGTTATTGTACCAGCATGCATGTATGTGAGAATAACACTA
CTAGGACCAGGCATTTTAGCAAGCCCAGTGTCTGACATTCTTACAGCTTTCCTAAGCGAA
CCATTGTGCTATTATAAATTTATAATTCATCACCAAATCACTTGAATTGTGATTTCGTCA
ACAGCAGAGCAAGCATTTTTCAAGTGATTATTAGTATTATACATATAGTTCCACCAACCA
TCAGAGAAGAGCAAGACAATGCACGTACCTGCAATGACCGGAACAGCACAGGCTCAGACA
GCCTGAAGACCAACTTTTCAACTCCAGCCACTGCCTTCTGCTCGACGAACGCCCACAGTA
TCCTCCTGGCAGCCCTGGCGACCTCCTTGACGGCGGCATGCACTGCTGCCTCCACCATCC
CCTGCAGAAACCCTTCCCCGATCTCCCCTCTGACCCACCCTCCGTCCTTCCACGCTCTGA
ACACCACCTCGCCGTAGGCGACGACGGCCGCCCGCCTCCCTCGCATCATCGCCACCTGGG
CCCTTATGAGCTCCAGCCCCTCCCTAGCGAGCCCCTCGGTGACCCCGAGCACCAGCGCGA
GGAGTTTCCTCCCTTCCTCGGCCTTGAGGAAGTGGGGCGACACGAAGCAGCGCAGCAGGA
TCATCTTGAAGTCCAAGATGCTCTCGTCGGTGTAGTCGAGCAGAGGCAGCGCTTCGCGGA
GGGCGAAGAGGCGGCGGAGGAGCGGCCTGGCATTGGAGCCGGAGGTGAGCGCCTGGGCGA
AGAGGTAAGGCAGGGTCTGGGCAACGAGCGCCTCGCGCCCTGGAGGCCCGGCGCGCCACG
CGAGCTCGAAGCAGGTGGCGGCGAGCGCGGCGACGGGCGGGTCGTCGTCGGCGAGGAGGC
CGAGGCGGTCGTGGAGGAGCGTGAGCGGGCGGAGGAGGTCGTCCCATCGCGGCGGGTGGG
AGGGGTGGGTGAGGAGGAGGTGGAGGAGGACGGCGGCGGGAGCGCGGGGGGAGACGGAGC
CGGGGTCCGGGTCGCGGGAGAGGGCTTGGGCTAGGGTTTGCGGGAGGGAGAGGAGGACCG
GGTGGGAGTCGGGGAGGGAGTGGACGGTGTGCTTGAGGTTGGGAGGGGTCTTGAGAGCTG
CGGCGGCGGTGGGAGCGGGGAGGAGGGTGGCGGCCAGGGCGAGGAGGTCGGCGGCAGAGG
AGGGTGGAGTAGGCCCGGCGGCGGGGTCGATGCGGCGGCGGCGGGGGGGGGCGGGCGGGC
GTGCGGGGCGGGGGGGCGGCCTGTCGGTCGGGGCCCGACAGGGCGCGAGGGGGCGGGTGG
GCAGG