morexGenes - Barley RNA-seq Database

Contig contig_57167
Source Contig contig_57167
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57167 (7060 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_57167

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69927	1	115 bp	None	Available	Available	None
MLOC_69926	3	2270 bp	AK360581	Available	Available	None
CDS Structure of MLOC_69927

CDS Structure of MLOC_69926

Contig Sequence (7060 bp)

>contig_57167 7060 assembly3_WGSMorex_rbca.fasta
GACGGCGTGGTGGCGGCGGAGCTATGTGGTTCTCCGACAGGGCTTCGCCAAGCGCTGGGG
AGGACGACGAGGAGGAGGAGTAGGGCTGCGTCGTGGAGAGATGAATTGTGTCTCTCCAAA
AGGCCAAAAACCTCCACTATATATAGGAGGCGGGATGATGGAAAATGCTTCTTCTTTTCT
CTCCGGTGCACATGAAGGCTCAAGGCAAAGACACTAACTCCGTATGTTTGGTACTCAGTT
TCGTTAGTTGTTTTCTTTGCCCTCTTTCCTAATTCGCAAATGGCAAAGAGTTTGTACTAA
CGGTAGAATCTTTGCCATCTACTCGATGGAAAGCTGACGGAAAAGTACCTCTTTGCCCAT
TCATAATATGCGATCAAGCTTTGCCGTCTGTTGGCTGACGACAAATTCTTTGCCGTGTGT
ATACGGGCCTTTGCCGTCTGTTAGTGCCTGACGATAAACTACATGATTCCCGTAGTGCTA
GGTTATAGAACTAGTACATCTTTAATGTAAAATTATTTGAATTAGGTTATAGACCTAGTT
TAACTCTAGTGTAAAATTATTTAAACAAGGTAATGAAGGTAGTATAACTCTAGTGTAAAA
ATATTTGAACTATGTCAAAGAGCAAGTACAACTCTATTGTAATTTTTTGTACTGGGTTAT
AGAGCTATTTCACCTCTAGTGTATAGTTATTTGAACAATGTCCAATAGCTAGTACAACTC
TAGTGTACAATTATTCGAAGTAGTTTATTGAGCTAGTTTAACTCTAATGTAAAATTATTC
AAACTATGTTATTGAGTTAGTTCAACTCTAGTGTAAAATTATATGAACTAGGTTATAGAT
CTAGTTCAACTCTATTATAAAATTATTTGAACTAGGTTGTAGAGTTAGTTCAACTCTAGT
ATAAAAATAGTTAAACTAGGTTAAATAGCTAATTTAACTCTAGTTTAACATTATTTGAAC
TAGGTTATAGAGAGCTAGCTCAACTCTAATGTAAGTTATTTGAACTAGGTTATAAAACTA
GTTCAACTATAGTGTAAAATTATATGAACCGTGTTATAAAGCTACTACAACTTTAATATA
AAATTATTTTAACTAAGTTATAGAGCTAGTTCAACTCTATTATAAAATTATTTGAAATAG
GTTATAAGGCTAGTACGACTATAGCGTAAAAATATTTGAACTAATTTATATAGTTAGTTC
AACTCTAATGCAAAATATTCGAACTAAATTGTAGAGTTAGTTCAACTCTAGTGTGAAATT
ACATGAACTAGGTTATAGAGTTAGCACAACTTTATTATAAAAATATTTGAACTAGGTTAT
AGAATTATTACAACTTTAGTGTAAAAACTAGGTTATAGAGCTACTTAAATTCTAGTGTAA
AATTATATAAATTAGGTTATAGAACTAGTCCATGCCATGTCACCATTTTTGTTACTCTCA
ATTATCACTTGTTAAAACTTAAGTCAAATTCAAATCAAAATTCCAAGTTAAATTATTATC
TTTACAAACAATAAAACACAAATGTTGGTTGGATTTTCAAATAATCACTATGGAATTATC
GTGTAGGCGCCCGCGACATCTCCACTACCCTCCTTGCAAGCTTACCATCCTCCTCGTAGA
TTCGACGTCATCGTTGCTCTTTCCATAGGAATCAAACTTAGCTGCCAACCCTCGACGTAA
GAACATGCACGCTTGTATGGGTGGGTGGGTGGATGGGGAGGTTCACTCACCCATCTTTGC
GTTATCGGCCGTTGGTCGCCTTCTCTTTCTTTCCTTCCATAGTCCTCGTCCCCCATGTAT
GGTCGCCATCTATGACCCCAAGAGGTTGTATTTTTTTTAATTTTTTTAGGAAAAGAATCT
GACCTCCGGCCTCATCAGAAAGATGCATATGTCCATCTTTATTTAAAGAGCCGTGAGGTC
GTATGCGAAGCTGAAACGTGACAACTGGTAATCAAGGTTTCCAGATTAGAAAAGGGGCAC
CGCCACACATACTCTGAGAGACCTAGTTGGTCCTTGTCGACCAGCTGCCCGTACAAGTTG
ACATTCAGCGATCGATGCTGACAATGTTACACATAACAGTTCCAACTCCATGAGCTCGTC
GTGCTGGAATTCATTCAGGCCTTGCTTGACTAAACCTCTCTTGAAGAGGATTGAAGTGGA
CCGATCGAGGGGAATTTTGACTCGTGTCGTGTCGTGTGGCACTTATCATTTGGGTAGATT
TACCGTCCCTTTCCGACCCAAGAAGCGGTATGTAAGAGTGAGTTGGACATGATGGACTAC
GAAATTAACCAACTTCCATTTGATTACATCTGCATCAACTTACACCTCCTCCTTCTTCTT
CTTCTTCGTCTACAACAACAACAAGCGCGCGCATGCTGATCAGGGGTACATTTTCTTCAT
CAAAAAAACAAAAACCTCTTCTCCACGGGAGCGAAGAGAGGAGAGATATCAGCACCGCCG
TACGTTATTCCGCCGGCCTTAATTAATTACCCTAACCCCTCCATGGATCTCCCTAGTCGT
AATCAACCACACCAACACTCTGCATCCTGATTAATCCTCCTTCTTCTTCTTCTTAATCTC
CTTCTTCTTCTTCTATGCACCCGACCTACTGCTGGTATACATATTATGGCATCAGGGCTG
CGCCTTGTACGGCGCCGCCGCGACGGCCTCGTCGACGCTGAAGAAGATGCGGCCCGACCC
GAACGTGTCGCCCACCACCGAGTTGTACATCCTCTCCGTCACCGACCCCACCGGGTTCGC
CAGCACCAGGTCGATGCCCCGCTTGTCCAGCACCCGCTTCATCTCCGCCAGCGCGTCCAG
CCCGCTCGTGTCGATCGCCGTCACGGCTGCAATCAATCAAGCTCGTCAGACTAGCTCCGA
ATCAATCTCTTCCAACTTGGACGCGCGCGAAGAACAATTAATGGCGATCCCCGCGCGCGC
GCCCGGGAAGATTGATTTAGTTTGCGCTGCGCTGACAGACACTCGGACAGACAGACAGAC
TCACCGCTCATGTCGAGCACGATGCAGCGGACGCCGCAGAGGTTGGCCTTGGCGGCGCGC
TCCTCCTCCTCGCGGAGATACCGCATGATCCTCTCCACCAGGTAGGTGGAGTTGGCGAAG
TAGATGGCCGACTCGACGCCGACGACGAGGAACGGCGGCACGCGCACGGCCTCGCGGTAC
TGCGCCATGCTGCGGTAGCTCTGCGTGCCGGGGACCAGCCCCATGACCACGGTGTTGGGC
CGGGTCACCTGCAGCAGGATCTTGAACAGCGAGATGCCGACGGCCACGGCCAGCCCGACC
TGGACGGACACGAGGAGCACGCCAAGGAAGGCCGCCACGCACGCGCAGAAGTCCAGCTTG
TCCACCTTCCACAGCTTGGCCGCGCCGCGGACGTCGATGAGCCCCGCCACGGCCGTGATG
ATGATGGCGGACAGGATCACGTTGGGCGTGTAGTGGAAGAGCGGCATCAGGAAGAGCAGC
GTGACCAGCACCGCCGCGGCCATCACGATGTTGGACACCGCCGTCCGGCAGCCGGCGCTG
TAGTTGACGGCGGAGCGGGAGAAGGAGCCCGTGGTGACGTAGCAGGAGGCGCAGGAGCCG
GCCATGTTCATCACCCCGATCGCCATCATCTCCTTGTTCCCGTCCACCTGGTAGTTGTTG
ATCGACGCGAACGTCCGTCCCACCGCGATCCCCTCCTGCAACATTCAAGAACAAAATCCA
CCATCAGATCAAGATGCCGCAACAAAAGTTTCTTCAGATTAACAAAAACCACAGACTGAT
TGATCGATCTTACGGTGAGGGACAGGATGCCGGTCATGATCCCGGTCTTGATGGCCAGGG
CGACGTAGGAGCCGCTGAAGACGAGCATGTTCATGGATGGAGGGTTCACTCCCCTGGGGA
GATCGCCGATCTGCATGACAAGGATGGCATTTTTGGAGACTGATCAGAGACAGGTTATGA
ATGTTCCTTGGATTTTTCATGCTCGAAACATGTTCAGAGATGACATGCCACTGAAGAAAA
ATCGATGTGCTTACGATGCTGATGGCATGGCCTCTGCACAAGTAGGAGATGATGGTGGAG
GCGATCACCGACGTCAGGGGAGCCGCCGCTGACACCCAGAACAGCCTTGGATTCCGAGCG
CTCTGCGGAAGAACAAGGAGTAAAAATGTGTGATTGTTCAGTACATCTGCTTGCTATTGC
TATACCTGAATTATCGTCACACAAAAAAAACAGAGCAGGGGAAAACAAATCGAGGACAGG
CTAACTGAAGATTTTAACATGACAAGGATAACTGCGTGCCCCATAAATAAGTTTACTACT
AGTAGTTCTTCTATGATATGGGAAATTCTGAGGTGGAAATTAAGCTGTTTAGTCAATGTT
GCCCCATCTTTTCAAGACCAACACTTCTGAAATCGGAAAACCATCAGTCCATCACGCACC
CTTGCCCGCTTGTCATCGAGGATCTTGCGACACGTTATTGCGGGTTCGCGGCGCGTTGTT
CATCAATCATCATCTCCACATTTGATTCTCCACATTTGATTTGACAGAAGAAAATATCAT
GGAGATGAGGAAAGATTGTGACCAACTACTAGCTTAGGAGGTGACACATCAGAGACCAAA
TTCCACACATTCTCCCCAAAAAGGGAAAAGAGGGCAGGCTGCAATGGGTCACCGGCCAAT
ACAGAATAGATTCTAACTAAGGCCACACACAATGACACACGCCTTACTCCAAATTGATTG
ATACGTTTGGCCTAGCAGAGTGTATGAAAACTGACGCAAGCTATGAACATGGCAGCTGTA
TGTGCATGGCCAAACTGAAACTGCTCGGACAGGTTAGGTTTGGCTTCAAAACATATGTTT
GGTATGACTGAATCTTCTAATCTGTACCTTTTTTTTGCTGAAGGAAACAGTGACACTTTT
GTGAAGGAGAAAAGGACATAGGTAGCACTGATTTGTTTGAATGGAGAAGACTATACTGAT
TTGAACCACCTTTAGCAATCATTCTACAATCTTGAAAGCCCATGCGCTCAAGAACCAACA
GGCACTTTTTGGCACCATGTTTCAGTCTATTGTTATTCAGACATCTTGGAAGGTTAGGCC
TCCCATAGGGGGAGGAAATAGACTACCAACTGCCCAGTTACACGAAGAAAGGCTAAAAAG
CTCTTGTTAGGACCGTCTAAAGTACTATTAGCATAGACAAACTAAAAGAGTTCAAAAAGT
TGTAACTGATTGGACCAAGCTATTAGCCATGTTCTCTAATGAATTATAGGACATTTCTTT
CTTATGTATGATACTCATTTTGAGTGTACTTCAGATACCGTCGAATGTTGTTCCGAGGAA
ACAAAAAACTAAAGTAAAGCAATGGATTCGTTTATTTGTTAAGTCAAATTGAAATAGGAA
TGCTTTTTTCTTTCTTTTCTTTCAGAAAGATAAATATCCCAGCATTATCAGGTCCCAACA
AGCAGGAGCTAGGTGGTTAAGATCACCCTGCCACTAATTATTAGCCATTAGCTGAATTTG
AGTGGAGTGAAATTCCTTGTTAGTGGGAAGCACCCTTTGGGTCCCTCCATTGTACTGCCT
CACTTTTGTGGGTTTAATCACCACCTCCCCTTTATGCAAATTCTACCTTTCCTAGTTGCT
ACCTGTCCATGCCCGTGGTCAAATAATTCTAGAAAAAGCATTAGCCGACTAATTCGCAAA
TGATGACTAAACCTGTCTTAAACAAAAGGAAAAAAAAAGGAGATGCATATGTATCCTATA
ACCATAAGCATATGCATATGTGTCCTTCTCCGGTTACAATCTGTGATTTAATTAGTATAA
AATTGAAACTAAACATGGTTTATGTTAAAAGTAAGAGGATCTTGGAATTAATTAATTGTA
TTATTAGTAGAATTGAAACTAAATATGGGGAAATTAAATTGGAACTAAACATTGTATACT
ACTTTTAACTAAATTAAATTGGAAGTAAATATGGGAGTATGTGCTAGGCAGAGGCAGATC
ATGGGTGGTGGCTGGCTTACGATTTGGCGTGTGCCGAGGAGGATTGCGAGGAAGGCGACG
CCCATGACGATGGTCTGCCACTCCCACTCGCTGTGGCGGCGGACGACGGAGGCCATGACG
TCGACGAAGCCCATGTGGGTGGTGAAGTGGACGATGCCGAGGAGGCCCTTGAGCTGCTGC
AGGGACACGATGACGGCGGCGCCGCCCATGAAGCCGGTGAGCGTGGCCTTGGAGAGGAAG
TCGACGATGAAGCCGAGGCGGAGGAACCCCAGCGACGCCTGGAAGAGGCCGGCGAAGAAG
GTGGCGGTGAAGGCCAGCTGCAGGTACAGGATGGGCTGCTGCTCCGGCGCCACCGCCTCC
CGGAGCATGGACCCCATCACCAGCGACGCGATCGACACCGGGCCCACCGCCAGGTCGCGC
GAGCTCCCCAGCAGCGCGTAGATGAGCGGCGGCACGAAGCTCGAATCTGCGCGCATGCCA
ACAATTTCGTCAATCAGCCATTAATTCCTCGCCATGAATGGGTAGACGACGAGGCGTGCA
TGCGAGCGAGAGCGAGACTCACATAGGCCGATGATTGGGGGCAGGTTGGCGAGCTTGGCG
TAGCTGATGCCCTGCATGGAGAAGAGAAGATGGAAAGAAATTAATGCCGACCGATGGAGG
AAACTTGCGGCCGGTGGCTTCGCCGTGGGCCAGAAAAGGAAGGTGCTAAAAATGGGGCGG
CGAATTGAAGGCAGCGGGACCAATCACCAATGGACGGAGGGATGGATTACCTGGGGGATG
GCGAGGCTGGCAATGGTGAGGCCGGCGACGGCGTCGGAGCGGAGGAGGCGGAGGCTGTAG
TTGGAACCCCAGTGGAAGATGGGGAAGAAGTACTGCAGCGCGAGCACCAGCTTCCGGGCG
AGCGACTGGTTCTTGAACTGGTGCAGCGGGTCGTCGGGGAAGAAGATCCCCCCCAGCCTC
TGCCCCAGCGCCCGGCACGTCGTCCTGCGCTCCGGCGCCGACACCTTGTGCAGCTCCACC
ACCCTCCCCGCCGCCCCCCACTCCGCCGCCCCCCACCCCC