Map Locations of contig_57165 (7971 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_57165

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69925 2 1767 bp AK251681.1 Available Available None





CDS Structure of MLOC_69925






Contig Sequence (7971 bp)

>contig_57165 7971 assembly3_WGSMorex_rbca.fasta
AAATAGCATATTAATGCATATAAAGCATCCAAAACAGATAATATAATNNNNNNNNNNNNN
NNNNNNTTATAGATACGTTGGAGACGTTTCATACACTTATTATAAATAAACAATGAGATG
TCACACTTGGAAGGAGCAAACCCAAGTATTTGGAGCTTTGAGCTTAACCGAGAGTACCAT
GCTCGTGGAGCTTGCTTCAGTCCATAAAGAGCCTTATCAAGCTTGCATAAATGGAGGGGT
GTATTCTTGCTCTCAAACCCAAGAGGTTGTCTCATAAACACTTCCTCTTCCAGGACGCCA
TGAAGAAACACATTATGCACATCTAGCTGTCTGAGGCACCATCCCGTGGATACGGCAATA
GATAGAATAAGACGAATGGTGGCAGCCTTTACAACTGGACTAAAAGAGTCCTCATAGTCT
ATGCCATACATTTGCTTAAAGCCTGTTGCAACCAATCTAGCTTTATAGCGATCTATGGTG
CCATCAGACTTCTTTTTAATCATGAATACCCATTTGCAGTCAATCACATTTTTACCTTGA
GAAGAATGAACTAAGTGCCAGGTGTTTTTTTTTGAAGGGCCATAAACTCTTCCTCCATAG
CCTTCTTCCACCTGGGATCACGCAAGGCTTCTGCAGCAGTGTTTGGTTCAACTTTGTCAC
AAGAAAGACCAAACTTAACTATATTTTTGTAGTTTTTTGGTTGAGTTACTCCCCTTTGAA
GCCTTGTCCGTGGTGGTGAAGGAGATGGCACAGAGGATCCAGCGCCTGGCGCAACACTCG
ATCCCAAAGATAGTCTGGCAATCGGCGGCTCATCAGGGAGATCCCCTGCGGACGGCGGAG
ATGGTGTAGATGACGAGTCGAGCGATGCAGAAGAACCAGCACTGCCAGCCGACGCATCAG
GAGCCGATGATGAAGTGACTCCCGGCGCCGCTGCAGCCAACACCGAGCCAGGGTCCTGGC
GCGGCTAACGTCCCGTGTGATGAAGCGGCTCATCAGCGAACCACGTGCGCGCCTGGTGAA
CTGCATGCAGCCACATGGCCCCATCTGATTGAGGCGGGCCGACACGATCGAAAGTGAGAG
GCGGCCCAGACACGGACCTGTCGGGGAGGGATCCTGAGGCAAATTCGCCACGTTCCCGAG
GAGGATCGGTTGCAGGGCATGCACTTTGTCCAATGGTCTTAAAATGATGATTTTTATCAG
ATTCTTCATTATTTTCTCCGCTATCTTTTTCTACTACATCACAAGGCTCATGTGCATCAT
TAGGAGGAGGATTAGTCAACAATAAATCATCAGCAATAAAAGATTCCCCTAGAGATCCAG
TGACAAGATTTGGAGGCAGAAGAAGGATTTCTTGTTTGAGAAGGGCACCGGCATTGGGTG
AAGGCTGGCAAAAGGAAAAATAGTCTCGTCGAACACAACATCACGGGAAATTTAGACACG
ACCAGTGGATACATCAAGGCACTTTATGCCTTTGTGTTGAGGACTATATCCCAGAAAAAC
ACATTGCTTTAACCTAAACACGAGCTTACGATTGTTGTAAGGGTGGAGGTTTGGCCAACA
GGCACACCCAAAGACTTGAAGGATTTCATAATCTGGTTTTGTGTGGAAGAGACGTTCTAC
CGGAGTTCCATTATGAATGAATTTACTAGGAAATATGTTGATAAGATGAACTACGGTAAG
AAAGGCTTCATCCCAAAATTTCAAGGGCATGGAGGCGGCAGCAAGCAGTGCTAGTCGTGC
CTCTACTATGTGCCTATGCTTACGTTCAGCACATCCATTCTGCTGATGAGCATGAGGGCA
TGACACATGATGTGAGATGGCAATTTGTTGGAAGAAAAAGTTTAGGTTTCAGTATTCTCC
TCCCCAATCTGATTGGAGAGCTAGGATTTTACAATCAAACTGCCTCTCAACAAGAGCTTG
AAAATTGTGAAACACTTGGAAGACCTCATCCCTCTTTTTGAGAAGATAGATCCATGTGTA
CTTACCATAGTCATCAACAAAGCTCACATAATAAGAATGTCTACCAACCGAAATGGGAGC
AGGGCCCCAAACATCACAGAAGATAAGTTGGAGTGGTTTGGTAGAAACACTTGTAGAAAC
GGGATATGGTAATTGATGACTTTTAGCATGCTGACAAGAATCACAAATTGTTTCACAATT
TCACTCACCAACAAACGGGAGCTTATTATTTCTAAGTAACTTCTCAACTAAAGAAAAATA
TGCATGGCCTAACCTATCATGCCACCAAGTTGAAGAGACTTTGGTGACACCATAGGCTTG
TTTATTTGATCTCCTGAGCTCTGGAATCAACGGGTAAAGCCCTCGAACACATCTACCGCG
ATAGAGTATTTTCTTCATGGTCTGATACTTGATCAAAAAGAAGAAAGGGTGAAACTCAAG
GAAGACATGGTTATCAATAGCAATGCGATGAACGAAGAGGAGATTTTTCAAAGCCCTAGG
CACATGCAAGATTTTTCTAAGGTGAATCTTTCTACGAGGGGTTTTTATTACTGAATGGCC
AATGTGACTAATACTCATACCTTCTCCATTCGCAGCATGGATCTGGTCCTAGCCATGATA
CTTGTCACGGATGGTCACCTTCTCAAGCTCACCAGTGATGTGGTTTGTAGCACCACTGTC
GACATACCAGTTGGTGTCGACCCCGTAGGAGCCATCTGCTGCAGCTGCTACTTTCTTGTC
CTGGGAGGATTCCTCATCCTCCTCAAAATGATACCAGCAATCTCGCGTCGTGTGACTCAG
CTTGCCACATATCTGGCAGCGGGGTGCATTAGGGCGAGAATTGCCAGAGTTGCGGTGGCC
CTTGTTGTTGTTGTAGGAGGGTCGTCCGCCACCACCGTCGCCACTTCCGCCGCCGCGAGG
GGTGTTACCACCACCAGGGTTGTTTCCTCCGTTCGCCGGCTTTCCCTTGTTATGCGGAGG
ACCGTGGTAGCGAGAGGAACCACTGCCGCCGCGGTCGCGAAAAGCGGCGTTGGTCGATGA
CTTAAACCCTTCACCAGAGCCTGCACCTTGGAAGAGGGCGAGGCGTTGGTCAAAGTTGCT
CATCTGAGAGAAGAGGTCGTCGAGGTTGATGGTGTCGGTGCGGGCGTCGTTGGCGGAGAC
AAGGGGCTGGTATTCCATTTCCATCACAACGACGATGTAGAAGATCAGTTCATCATCATC
GATTGTTTTCCAGCGGCTGCAAGCTCATCTACGAGAGACCGCATGTGAGCAAAGTATGTT
GCCACGGTCTGCGTCCCCTTCTGTGCCATGGAGAGCGCGATCCGTATGTTGTTGACGCGT
GCCCTGGACTGGGATGACAACATGTTCGCGAGGGCAGCCCAGAGCTCATGCGGCGTGGCG
ATGAAGGTAACATGCACAAGGAGCTCCTTGGAAAGATTATTCAGCAAGTAGCCAAGTACC
TGTTGTCCTTCTGTTACCCAGACGGTGTGGAGAGGATTGAGCATCTGCTCTTCTTTGTCG
TCTTTGTCCTTCGTGGTGAGGATCTTAACGGGCTCCGGCGTGGTACCATCGACATAGCCG
AAGTATCCAACTCCCCTCAGCTGCGGCGTCGCTTCTGCGCGCCATAGCACATAGTTGCTG
CGGGTGAACTTTTCTGTAACTTGCCCAAGGAGGACAGTTGCGGCGTTGCCAGAGGAGGAC
GACATGGTGAAGATCGGTTTTGCTAGATGAGATGGATAGAGGTGGCTCTGATTACCATGT
AAACTTGGTTGTAACGCTGTACCTCTCACGAGGCGACGGCTACATGTTATATAGCACGGG
CATATCCTTGAAATAAGCATACAGGTTGTTGTAGATTACATCTTAAGGAACAAGAAAAAT
AGAGATAAACCGAAACAAGTTTAACTAGAGAATCTGGCTATTCTATCATTTACCGGCTCG
GTACAAGCATCGTAATCGTAATTGAATCCAACAACTCTATCTTGTGTCTAACACTCACCA
ACCAAAATCAGTCCACTCTATTTGAAGGGAAGAATGAGCCACCAGAACTCAAACAAACAC
AATTGTTGTTCTTATAACGGGAAGAAGACAAGTGCAATGCCAAAATGGTAACCCCAAATA
GTTGTGTGATTGGACTAGAATTAGGAGTCGTCGGGAAGAAAACAACTGGCTCTCCATAAC
AGACCCCAGCAAGCTCTAGCCATGAATCGACGAAACAACTATAGAAAATTCGAGCAAGAG
TTGCCCATCGCGGATTATTTTGGAGTTGGTATGCACTCCATCTTTTCCATTTACGCAGAA
GTAGAAGTAGCGCGTGAGAGAAGCATGTAGGTGATAGCCGGTTCTTGACGGTGACCTGGT
TCTGCAAGGACCTGCTTCCTGATAGTCAATGGATGACGAAAACTAACCTCCATGGGAGTA
ACAAAATCTCCTCCGTGGAAACTGCCTAGGTGGATACCTTTGCTGAACACCATGTGATTG
TAGAGTAATAATAGCTTACTCAATGTAAGAAGGTAACGTGCACTACTTATGCCGACGACG
TCAAATCAAATCAAACAATAAAAGCCAACCAATTCAGGCTGAAGCACAGGCGCTCAAGCA
AATGCATATGCAGGACGTCACATTTCTACTCCCTACGTTCCTAAATATAAAGACATTTTA
GATATTTCATTATAGACTAGAACGGAGCAAAATAAGTGAATCTTCATCCTAAAATATAAC
TTGAAATCTTTAAAAGATCTTATATTTAAGAATGAAGGGAGTAACAAACAACCTAACAAT
AGGGAAAGCAGCCGTAGCAAGAAATCCGAGGAATCATCCTGGGCATTGGAAAATCAGATC
AGCTCTTGTAGATTTCTGTGCATTTATAAGTACTTTATTGACTTAGGTCTATCAGATATC
CGAGAACTTCAGTGAAAGTGCTAACACAGTACCACAGTTTTTAGCGGCAATAGTTCTACC
CACGATTAGAATACAATGCCCAGTGTGTTTGAATCCCCAAGGGTTTTATACATTGTACTG
CGGATTTTATCCCCGAGGGTTTTGTTACCCTTGCTGTAATTTGTGCTTGAATGGAATATA
TGGCACCGCTAGCTGGAAATTGCTTTTGGAGCTCGGCCTCCATGACGGCCTTTAAATTTG
AAATTTAAATTCATAAAAAATCAAATTTTTACATTTAAAAAAAAATATCGAAATAAGTGA
GGGCATAGCACACATATGTGAAAATTTTCAGAAAAAAATATGTTAAAATGAGGCATGTAA
AAAAAGACAAATCTAAGGCTTTTTAACACATGATGCTATTCATCGTTCCAGTCCGTGAAC
TTATCTTTTTATTGCAAATTGTATTTCAAGGTATTTCATCCTATAAATTTATACACATAT
GCATAACATATTTATTTACTTGCATATTTTTTTCATTTTTTTAAATCAAAAAAAAGTGAA
AATTGATTTATTTATTTATTTTTAAAAATATCGAGCTCCATGGAGCTTGGCCTCCAAACA
TCCGTTCTCGCCGCTAGCGCCTTTTCTTGTTCAAAGAAAAGAACATCCGCCGCTAGCGCC
TTTTCTTGTTCAAAGAAAAGAAGAAGGTGACGTGCACTACTTATGCTGATGAATCAAGGA
CCTAACATGACAATGACATGAGATCACCAATTTGGTGAAGGTTCTGGTAATAAATCAAGT
GAAATGTACATGTTGTTCACATGGCTTCTCACTTCAAGAGGGACCGAGGGACAGTAAAAT
GCACTGCTATAAGAATGCACTGAAATGGAATAGAATGGAACAGATCCTTGGAATTATGAA
TTAGGCGCCCTAAATATTTACAAGGACTATATCGGTGAGAACTACATGTAGAAAAAATGA
CTCCCTATGATCACACAGCTGTTATCCAAGATTAGTAAATCTGGTATAGTTTTTTTTTAA
ACAAATCTGGTATATTTTGCCAGAGCACAAGTGGAAAGAGGAGTATAATATAGATTACCA
CACCTGTACAGCAGAAACTGTGCAAGCAGCCAGGCAAATCCTTATTTAACAGATAAACTT
ATACTCAGAAATAAGATGTATAGGTTTACTTCCATCACCAATTGAACAGCTAGAACTAAA
GGGAAAAAACGATCAAGTGCACGGATTAAAGCAAACTGGACATAGATCCATGCCGTTCAC
ATTCAGAAATGGTAGCGACGACATATAAGTTGACAAAAGATAAAGACAACGGTTCATCAG
ACTCATAAATGACAACGGTTCATCGACAGTCAGCTAGGAGAAGGGTTGATTACAAAAGAG
ACTCAGGATGCAACTTTTTTGCATCTAAGCTTGGACATAAGCATATGATAGCCGAAGTTG
ACAACAGGGTGCTTCCCAATCTCCCATAGTCTCATTCCTGAAACACGCAACAAAAAGTTC
AGAGTAATGAAGAGATTATCAACCTCAGACTGAACATCCAAATTGCGAAGGCTTACCCTT
TGTCCTGATATACAGGGGTTTGAATCCCTCAGAAAAATTCGCCACAGATGGGCATGTCAC
CGAAGCTCCAAAGGTCCATGTTGCTAACGACATCCTGAGGCACATCAAAATTCAGAAGGC
TATCAATCGGCTCATCCACGCCATCATCCATAAGAAACCTCGTCCAAGGTTCAAAATCGA
CAGCATTGTTCTCCATAACAGGAGGCACCACTGAGTTGTAGGTGTTGCTCTGGATAAGCG
CAGATTCTGCTCCTTCAGCAACGGTGGAAATGGGAGCAACGGATGATATATCTGGAGTCT
TGGTCTCATAGTCCCAGCCCAAGTCAGAACAGCCAAAAGAGTTGCTTCCCTGGTCAGAGT
ACATGTTCATAACAGGAGCTTCAACAGGGGCAGCAAACTTCATTGCAGGAACAAATGGCA
CGTTATCAGGCTGAACAGGTGGCTGGTTTGATGCAAAGTCAGCAGATGGGTAGACGAAAG
CATTTGGGTTGGCAAGGTTGTTGACTGCTGGTATGACGGTAGGTTCCTGTGATGCGCTTA
GCTTGGGTGCTTTAAGAGGAGCAGGGCGAACACGGCGCTTCTGAGGAACTGTTGGTTCCT
CTGGAAAGTTTACCTTGGCCTTCTTGCCACGGATCCTGCGTGCTTCAACATCGTAGGCTC
TTGCAGCTTCTTCAGCACTGTTGAAAGTACCAAGCCAAACACGGACACCTTTGCTAGGAT
CTCTGATTTCAGCAGCCCACTTACCCCAGGGGCGCTGACGGATACCCCTGAATTGGTTCT
TTCTCTTCCTTTTTGCTGACCTTTGTGCAGGACCATCACAACCAGCAGTAGTAATGATGC
TGAAGTCATCTGCAATGGAAGATCATTGTCGATGCTAAGAGAGACCAACACAAACAAACT
TCTCTCACAAAAGTAATTAATTTCATCATGGACATGAATCATATGTAAAATATCACAATC
GTAATGAACATTGAACCATGATGGGTATAATCCTCTTCATGTTTTGGAGAAAGCATCAGT
CGCCCGCAAAATAAATCACAACATATAAAAATCCAGGATTCTGATAAAGAGACCTCATGC
TATAGACCTTTACCATCATTCTGCCATTGTTAATCTACAAATCACACTATAGAAGATGCA
GAATCAAGGATATTTTTTTAGTAGGATTCAATAATTACCAGAATGATCTTTTAGACTGAT
GTGAATGAACAAGTCTAGAACAATCCTCACGCCAATCTACAACCATCTAACAGGTAAAAA
AATTAAGAGGCCCAGACCTCCAAGCAAAATGGAGAAATCCAGCCCTTCCCCTTATGACTA
TAAAACAGTAAGCACATGAATCACCATCAAAGCTCACAAAAAGTATAGATCACAAGATCA
GCAACCTAAACAACCAAAATTGCTTCTCTGAAAGCAACAGTGCCGAAAACAGCCTACCAG
CCTAATTATTTCAGACTGACACGGCAGAGAAACGAAAAAGGCCTAGACCTCTTCATGATA
ACATATCCAATCGATTCCAATACAAATTCTCTAAACAAACAGGTCAAACAC