morexGenes - Barley RNA-seq Database

Contig contig_5715
Source Contig contig_5715
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5715 (7647 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_5715

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69909	3	3798 bp	MLOC_69909.1	Available	Available	LOC_Os11g07050.1, FRAME:-2, EVALUE:0.0, 13111.m00728 protein FHA domain containing protein, putative, expressed
CDS Structure of MLOC_69909

Contig Sequence (7647 bp)

>contig_5715 7647 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGAGGAGGTGGGCGAGCGGGGGATAACGGCGAGACGACGTGGGATGGGCGATT
AGCGCTAACGAAAATTATTTAGTTTCGTTAACAACGTTTTTAAACCGTTGATTACATGAT
TAGACTGCTAAGATGACGAGTTTGATCTGCGTGTTCGTGCTTTTTATAGTAGAGATAGAT
ACACCGGCGAAGGTTAGGCAAACCGTTTGGACGCGACTTGGACCGAACAAGAGGCTGAAT
ACGCACAACAAAAGGTAGCCAAGTCGATGGCAACCGTCCAATCCCTCATCCTTTTTGAGC
CCTGCGCCGCACGGGAGAGGAGGAGGTGGAGGACATCACCGCACCGCGGCAAACTCCCTT
CCGTTTGATCCTTCCTTTTGCTCAAGGTTGGCAGCAAGACCCATCCCGTCCCGATGAGTT
ACGGTCAAGAAGACCCATCAATCAATGCTTATAATTCCTTTTGGTGCACATGGCACATCA
GTTTGTTGCGCAGACAAATATCTAACTCTGTGCGTCATGATCTATAAGGTTTATATACAC
AAAGTTAAGAAAAAGTCTAGTGGCGAATGGCGAATGGCGAATGAATAAGTAGTAGGCAGC
TTTTGTGGTCAAGATGGCGACCAAGCCTGCGCTTGTACACACGGACGGACGGGGCAGAAA
AAAGGGAGTGGAGGAGAGGGGATCAAGGGGGGCCTGTCGGTCACGTTCGTCTACAGCTGC
ACTGCACCGCGCGACGAGCCGGGCCGCGCACCTCCTCACAACCCGTTCAACCCCGACATC
ACCCACATGCCCCCCTATCAACGCCGTCACCTCTCCTCCCTCTTTACGCGCTGCTGCTGC
TGCTAGGAATAAACATAAACCACGCAATTTTCCACCGAAAGCTGGTGGGTGTTCGGCAAT
TTAGTTAGTCTATTTATTAATTGCTACTGAAAACATTCATTCTGAATTCTGGGAGGTGCG
ATGCAGCAGCCATGTGCTAATGGCTGATGATCTGAAATTGTTCAGTACTGCTAGTAAACT
AACATTCCTGAGCGGTAAGATGTCATCACAAAAATATCCTATCGCCGTGCAGCAATGCCA
TCTGTTGGGATGGGAATCTACGGGGTACTGCTAAAATTAAAACCCAGGGTTCGTGATCCA
ACAAGCACTCGTGTGCCCACGTGATGCTGTTGCTCCGATACGAGTATCAGCGGATGGGAC
AGATGATGATTGATGAACATGCAAATGCCTAACTTGGACCAGATCATATGACTGTGCCAA
ACCAAGCAATAAACGTAAACTTTGTCATGTTCACATTCTCTCTCGTCTTCCAACTTGCAT
CACAGTTCACAACTTCTCATCAGTCACCAGGCATGGCAATCATACCATATCAGACAGACA
GCGTGTTTCACTGCAAGGATCAAAGAACTCGTTTACCAGGCGTTTTGTATCTGCCATTTT
TCACATGCTACTTGAAAGAACCGTGCCAACTGCTCAGGACAGCGTCACCAGGAGCAGGAG
GGCAACGCAGTGGCGTCTTCTCAGCGACGGAGTTGGTCGCCGGAACGCGGGCAGAGGGAG
GAGCTGTTGTGCAGCAGGATCAGCTTCAGGCCCCTGGCGTCCTCAACGGGCCTCGGGGCA
GCATTCCTCCTGGATTCACGGTGGCTGTTGTAGTAGTTCTCCGCCAGCGCGGCCTCGTCC
AGGCGTGACCACGCCGCCCCCCTCGGCACGCTCGCAGCCCACATGAACCTCCCAGAGCAA
GGGTTCATCAGCGTCTCCCGGAACTCCTTGGCTCCCTCGCACAGCAAGCCCTGAACACAG
AAAATCAAGTTCAGTTACATATTTGCACACTAAATGTCTTTTAGCAGGGGCTACAGAGAT
TCAGAAAAGAAATGCCATGATAGCAGGGGCTACAGAGATTCAGAAAAGAAATGCCATGGT
AGCAGGGCTGCAGAGATTCAGAGAAGAAAGCAATGCCATGGTACGGTACCTCTGACATGG
CTTTGATCTTGAGGTTGACGCTGTTGGACAGGATGACCATGTTCTGGCTGCTGCCTCTAA
GCTTGTTGAAGAGGAGGGCGCAGTCGAGGACACGGTCTTCGGTCTTGGGGGAAACGATGT
CGGTGAGGCTTCTTGGGGAGAAGATGCCAGTAAAGCTCCTTGGTGAGAAGAGGGACAGCA
TTGAGTTGAAGGCGCCGGCAGCAGCAGTGGCTTCACTTTCTTCACTGTAGCGTTGCGTTT
CTGTAGGAGTTGCAGGTGGGGTTGGTGCTACTGGCAACATCTCGGATGAACTCTGCACAT
GAATCCACCAGCTCTCGTTCTCCACGCAATCCTCGATCCATTGGATTATGGAGGTGGCCT
TTGATGACCTCTTGAACATGCCCTCCCGCTGTTTCATGCATTCCAGCTCCCGGATCACTG
GCAAGACCATAAAACAGGGTTTCAGTGGATGAGAATGGGACATCATGCACATGCACTCAG
TTCAGTTAATAATAATAACGACGAGCTGGAAAGCATATTGAATAGTATGTACAAGACACA
ATAAGATGTCAAAACTTGAAAGTTACAGAAGCACAATTCTTTAGTCAATGACATCATAGC
ATGCGATGATTATTGTAAATGACTTACAGCGTCAAAAATTAGTAGCGATTAGCAGCTCAA
CAGAATGAGACATGATCATTTAATAACAAGTCAAGGTCAAAATATGGACATAAAATATAT
GCAACAATACAAACAAGTTGTAAAAGTATTCCCCTCTGTTCAAATGTCACGGAGTAAAAA
CGTCATAGCATGACACATGAAACAATTACTACGTTGTTCTTAACTTACCAATCCTTGGTA
TGATCAGATGGGTTCCCTTTATGCCTTTTAGTAGCATTATAGACTTCCTTGATTCGTCAT
CAAGAAGACAATCTGTATCAGCCACCATGGTCCAGACTTTCACCACTTCTCCAACCCTAT
TGGATTCACGTTTTTTGTTCTGTTCACCATCAAAATGGTCTCAATTTCAGCATCCATGTC
AAAAGCAAAGATACACAAAATGGAAATTCGAAATCGAATCTTTAAGGTTACTTACTGTAA
GGCTGTTCAGTTCATCTTCCAACCTGATTGAGAAATTAGCTTCTCCAGCATCAGCCTGGG
TACAATCAAATGAGCTAGTTGGTCTCAAGGGAGAATTTGACAGAAGAGTCTGAAAAGGGA
GCCTATCTACCACCCTTTTATTTGTGATTGCACTTTCAATTCGTGCACGGTTTTCAGATA
CATCCCTTGTTTTCTGAGCTACAGAAGATACTGGTGTAGAGTTCTCCTTGTCTGAGCAGA
ATGCCTCCTGATCTTGGTCTGCATCCACTGGGAACAGGTTCTTCGGAAGACAACTTCTTG
CTTTCATACCTCCTGTAGATATAGGAGTCAAATTCTCCTTGTCTGAATAGAAAGCTTCGC
AATCTACTGTGTGGAAACCTTTGGACTTTGATGGTAGATCATTGCCTTCCCGTTTACTGA
TGCTCCTGTTTGGCGTGTATTCAGCCGACACTGAATTATCCATCCTTGAACCAAGAACCT
TCCTACCGATGGACTTGAGAACTCTGGAGGCAGGTGTCACGTTCTCCTTGTCTGGAAAGA
TGTTTTGTTGCCTCACAGGGGAGGTAGCATCATATCCTGATGAAAGTTCACTGCATTCCC
TTTGATGGATGCTCCTGTTTGAAGTGAACTCTTCTGACACCGAACTGTCCATCCTTGAGC
CAAGAACCTTTCCAGAGATGGACTTGAGATCCATGGAGGCAGGTGCCAAATTCTCATCAA
GAAAGAGGTTTCCTTGTTCAGCAGGGGAGATGGCAGCATCATGATTTCCAGGAGGTACTG
AGTTTTCCTTGTCTAGAATGATGTCATTTTTGAAATCGTCATCCGACATGAGCATAAATT
CTGTTTTAACTGACATTAACGGAATACAACTTCCAGATGTATGTTCATTTGACTTCCTCT
TCTTTTCAATCTTGAGCACAGAGTTTTCACTCTCTGAAAAGTTGTCCTGTTCCAAATTCA
GAGGGGAAATGGAATCCATCAACTCTTGCGTACTGGTAGGCTTCAACATTAGTTGACTCC
TCTCAAATGTTATATTGCCCGAGACATGAGGGGTGGTAGTCTCCTTGTCCAGTACACTGA
TCTCTTCTTTTTCCTCAGTTGCTTCTATATCCAAGTTGTCGAATATACTCCCCAAAATTA
TGCCTTCAAGCTGACAGTCCTCCACAACAATCTTATTTTGGGTCATTTCCTCCTTGTTTG
ACAGACCTCCACCCAATTTATGATGGGACGAACCATCATGCTTCATCTCTTGGTGGCTAT
TCGTGTTTCCATCAATCATGTCATTCATGAAAGGATTTTCTGGCATGGCCTCATAGGATT
CCATATGTATAGTAGAATCCAGCTGTGAGGTTTGCTTCGCCAAGGCTTCGTATTTGAAAA
CCGAAGGGGAAATAGAACACGGTGACTCTGGTCCCATCTGTGGTTTTGTATCAAATGAAT
CTTGTGGGATAGAGATTTCAGAGAAAATGTCATGCTGCTCTGTCTCCTTAGCAAAATTCA
GTATGGACTTCTCATTATCTGAGAGCTCCAAATTCAGAGGGTTTGGCACTTCTTGATTCC
TCTCCATGGTAATGCTGTCCATGACATGTGGGTTGATGTGGACCTTTTCTGGTGCAATCA
TCTTTTCCTTCTCTCCAGCTTTGACGTCAGAATTATCAAACAAAACCATGCAGGCTGCAC
ATTCTCCCTTGCAGTTTTGAGAACATACAAGATTCTCATTTTGGGCTTCCTCGTTCTTGT
AGCTGTAGCTCAAAGTCCTGCTTCTCCTTCCTGTGTCAATGTAAAGAGATTTCACTGACT
TCAACTTGGCCCTTCGGGACATGGTGCCTGACGATTTCTGTTTGTCTGATTGGACTGGTT
TTCCAGCTGCCTGTATTACTGAAGAGGCAACAGATTCTGTAATTGAATTCTCACTAACAA
TCGTTTCCTTTATCACTCCCACTCTGTTGTCATGAAAATGTGAGAGCGAAGACTCAGGCA
ATGGTGGTGCCGAGGGGATCGCTTCAGCCCAACATTCAGTTTGTTCTGCTACCACTTGAT
GTTTTGTCTCCTATGCATTATATTAGACAGTTTCACAGTTAGCATTGCAGATAAGTACCA
AAAGTTAAAAGATGTGAAGATCAGTAAAAGTTAAGGGAAAAGAAATCAAGCAGTAGAACT
CAAACCAACATGTAGCATCCTCAAAGAAAACACACACACACAGATATTGGAGAATATATT
ATTTAGATATAAGTGTAAACCAATGCTGTAAGCAGATCAGGATACTGAAAGTGGTTGCAA
AATCTGAAGTGGGTAGATATTATTAACTCATCATGCAGTTCATATCAAAACAAATTTATG
ATAAATATCAGGGAAACAACAAGTATCACTCACAAAGAAAACTAAAGCATGCATTTGTCT
TATTCTAGATGAATATTAGTTTGATGTACATAGTTGATAAATTATTAGTTGTGTTCAGTT
CTATCACACACGTTGCATATAAATTCAAACCGGCAGACAAACCAGTTCAATCTTGCACAA
ATTTTTTTTAGCATAAGGCGAGTACCATATACCCCATGAATACACCAGCCACAAGAAAAT
CATTTAGCAGACTAAGCAATAAAAAAATCAGTGAGAAAATCCAACTATGTACATGGGATT
AAATAATTTGCACAGGTGTCAAATGCATCCAGGCTGGTTCAGTGTCAACTTTCATTAGGA
CTTATATGCGACGATACAACTTCATACTAGGTAGAATTCCAAGAAGACGAAAATGACACA
TACAAAGTTCCTTAATGGTCATAATATTTAAGCATCTTTACATTACCACTGAAAGCAGTG
GAATCTTAATAAATCTAGGCACTAGGCAGAATTCCAGAAAGATAAGGCACATCAAAACAT
AATCAGGATTCATAGGTGGAAAAAATCAACTATGTACATGTGATTAACTAATTTGCGCAG
GTGTCCAAAGCAAATCAGGATGATTCAGTGTCAGCTTTCATTAGAACTTACTACACAACG
ATTAATGACACATAAAAAGTTCCTTAATGGTCATAATTTTTAAGCATCTTTACATTACCA
CTCCAAGCAGTGGAAGCTTAATAAACCTAGGTACTAGCCAGATTTGCAGAAAGACAAGGC
ACATCAAAACTTTATAATTCTAAGCAACTTCATGCTTTAAGTAACAAGGAACATGGCATT
ATTCAATTGTTGAAGTATTCAGATACAGAGCTACATCTTGATTTCAAATGTAATTCATTT
CAGAGAGTGATTACACATAAATGGATTTTAAAATAGATAAAAACTCTAAAAAATACACTA
AAACGAGTGAACTAGAAATTACTGGAATACCGATCATTGTAAATGTTGCCTAATCCAAAT
TGACCGACTTACTAAACATCCTAAATAATGCATTATAAGATTTGGCACAACAGCGGCAAT
TTCATCATTTGATATGCAAATAAGCTCAGTTAAAGGCACACCATCTATTGTACCCATACC
AAAACCAAGGGCACGAAATGCATCTCAAGTTTCATCAAAGGTTTCCAGAATTAGCTTGTT
GAGTTCAAACCTGATGAGTTTTTGTCTCCATTGGCTCCCTCTGCTCAGGCACCAACTGAT
TCCGTGCCTCCTGTTAATTTCATCAAAGGCTTAGGCTGCAAGCAACATAGCCAAAATACA
CACAGATTTTGTACCGGCATAAAATATGATTATCGACCTGATGAGTATGGATATCCTCCT
TGTCCTCCTCAACAAGTGGTGGCAGCAGGTCATCCATCTCAAATGCCTCGCGCAGGGAAA
GCCAATGAAGCCGGTACTCCCTCTTGGAGGCCCCGAGCTGTAGTGTATCACCAGCCACCA
ACTCCACCAGCGTGTTTGGTGGGATCCTTTGGCCCGAGACCCAGGTCCCATGCACTGGGT
CAATCAAAGCACAACAGTGGATCAGTAGTATGTAATTTTTTGCATAATTTCGACCAAAAT
TGCAAGCATATTCGCTATCATCGCAGGACCTTGTGAAGATGATAAGATGGGGCTAAGCTC
ATCCTGACAATATGGAGCCTATCGGGAGCAAATCCAAGTGAATCGATGGTATAAAAGCCC
CACGAAAATCCCCAAATAGATCAATCTACACGAATCGATTCACCCTAACAAAACCCTAGA
GTTCGCGTAAATCCAGGCACGCGCGCACGCGGAGAGCGGGGAGACGGGGAGGGTTGCACG
GAGGAAAGCGTGATCTCGGTACCGGAGGAGAGGTCGGTGACGGTGATCCGGCGCTGGCGC
CGCTTGCAGCGGACCTCGAGGTGGCGGCGGCTGACGCTGGGGTGGTCGATGAGGACGTGG
CAGTCGGGGTGCCGCCCAAACAGTACCGGCGGATCCTCCGCCTCCTCCTCCACCCGATCC
CGATCCGGGCCGCGCCGCGCCGCCTCCGTCGGCGGCCCGTTGAGGAAGATGTGCTTCAGC
ACGACGCCGCCCTTGGCCACCGCGAACGCCGCGATCGGAGACCCCGCCCCCGCCCCCACG
CCCCCCGCCACCGCCGCCCGTGCCACGCCCGCCCGCCGGCGGGCGCTGGAGGGGGCGGCG
GCGGGGGGGGGGGCTGTGTCGAGCAGC