Contig Data
morexGenes
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Map Locations of contig_57140 (4344 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_57140

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69904 2 1541 bp MLOC_69904.2 Available Available LOC_Os10g39220.1, FRAME:+1, EVALUE:3e-85, 13110.m03590 protein tobamovirus multiplication protein, putative, expressed





CDS Structure of MLOC_69904






Contig Sequence (4344 bp)

>contig_57140 4344 assembly3_WGSMorex_rbca.fasta
TTTTATTTCTACGCATAAACAACACCATGGCAATTCTGCCGAAAACAACGTTAGTCCGGG
TTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTAGATACGACGGAGACGTATCATATGCCACCAACACATTGTCCGTTATTAAGCGTCCTG
GGACAAACACACTTTGCTCCTTAGAAATAAGAACCGGTAGAATGCATTTCAATCTATTCG
CCAACACCTTCATAGCTATCTTGTATAGGACGTTGCACAAGTTAATTGGGCGAAATTGTG
AAAGTAACTCCGGTGAGTTAACTTTTGGGAACATAACAATGACCGTGTCATTGAAAGAAT
CCGGTGCTGCCTCTCCACACAGAAAATCACGCACAACACATCATACATCATCACGGATGA
ACGACCAGTGTCGTTGATAGAACAAAGCAGGCAGTCCATCCGGCCCAGGCGCCTTTGTCG
GCCCCATTTGAAACAACGCCTTCTCTATCTCCTCATCTGAAATAGTTTTGGTAAGCTGAC
CATTCATCTCCTCTAACACAGCTGGAGCGATGTCGTTTAATAGTGTTTCTGCTTCAGATG
AGCCCTCTGAGGCAAAAAGTTTCTCATAGTAGCCTGCTGCCATCTCTCGCATTTCCTCGT
CGACCATGCACCTCGTGCCATCCTCTCTTAGGAGACCCCGGATAGTGTTTTTCCTCTTTC
TGTGTGAGGCCTACTCTGAAAATACTTGGTGTTTAGGTCACCTGTTTTGAGCCAGTCCAC
CCTCGATCTTTGACGGTACATGATCTCTTCCCTCTCATAGATCTCCCTCAGTTGTTCTTC
AATCCTTCTTGCTTCCATGGAGGTCCCAATAATGACAGCTTTCTCTTTCGTCGCCACAAG
ATCTTTCTTCAGATTAGCTATCTGACGCCTGATTGAGCCAAAAACCTCTCGAGCCCACCT
TCTCATATTACCTGAAATATATCCGAGTCTACTGCATAGGGCCCGCACCCCTTGATTTCC
CCTGTCCGACGCATCCCAGGCTTCCGCCACCATGTCGTCGTATTTCTCGTGTCTTGTCCA
AGCCTCTTCAAAGAAGAAAGGTCTACTCCCCCTCGGGTGCAGGGTTGGAGCAGTCTCCAA
CGCCCTGATCACCAGAGTTTGATGGTCTGATTCCTCGGTCATGATATGTTCCACCACCGT
TTCTGGAAACAACTGAGCAAAACCATCATTACAGGTAGCTCTGTCCAGACGTACCTGAAC
GTTGTCATCTGCCTCCCTCCTGTTGTCCCATGTGAAAGGATAGCCGGAGTAACCAAGGTC
CACAAGGCCGCAGTCGGCCAGGCAGTTCCGGAAGTCCTCCATCTGGTGAAAACTCCTCCT
GTTACCACCTTGTTGATCTGAATGGAAAAGAGCTTCATTGAAGTCCCCCGCACAGTTCCA
GGGGAGGTCATCATGTGCGCGCAAATATCAGAGGGTATCCCATGATCGCTTCCGCAACTC
TGTCCGCGGCTCCCCATAGAAACCAGTGAATCTACAGGTCTTGCCATCCCACTTCATTTC
AGCATCGATGAAGTATTGACACCATGGTCTAACCGTCACTTGAATGTGATCTCTCCACCA
TAGAGCTAGCCCACCACTCCTACCCTGACAAGCCACCGCCACCCCACATCTGAAACCCAT
TCTCCACATCACCTTCTCCATGGCCGCATCATTCTTTTTAGTCTCACATAAAAACACCAT
CGCTGGGTTGTAAGACCTAATCAGGTCTCGAAGCTCGCCTACTGTCGAGTCCAACCCGAG
TCCTCGACAATTTCAGGTTAAATAATTCATTGCGTTTAGTAGTAGTTGTATATATATAGA
TGGATAAAAGACAAGTGTTTCGTTGTCAGTATTTATTAGTATGTCGACAATACCATGTCC
CTCTTCTTTCTCCCTACCTTACCTGACCCGGATGTTCTGACTCGCTCAGCGTAAGCACAG
AACACGGGCAAAGCCAAAAGAAGATCGGAATTGTACAATCCATGCACTGTCCCACCGCGC
CACCTCATTCAACCGGCGCGCCGTGCTGGACCAAAGCCCGCTTCTGATAGACGACCACTG
CGCTAGGTCCATACACCGGCCGCCGCGTCCTGCCCCCTCGTCCGTGTGGTCCACCACGGA
CCAGCTCCAGGGACGGAGTCGCTCGCTGTCCACGTGTTCTGATCCGCCTACCCTGCATCG
GCTCACCACCCGGTCACCCTGACCACCCGCGGAGCACGAAGCCGGAGGAGAGGCTCGCCT
CGAACCTTCTTTCTCCTTTCACCTGGCCTCCACGCAACGCGAGCGAAACCGAAGCCCCCC
CCAAATCCATTTCTTTCATTTCGGTTTCGAATCCCCTGGAGACGAGCTCGCGTCGCCTTC
CTCCTCCTCCTCCGCCCGCCGCGTCGCCATCCGCCCCCCTTCGAATCTGCGGGCGTCGCC
GCCTGGCCTCGTTGTCGCCACGGGAGGGCGCGCGGGATGGGGCGGTTGTTTGCGGTGGAC
GCCGCGGCGGCCTCGTCGGCCGTGGCCGCGGCGGCGATGACCGGCGCGGTGGACTGGTGG
AAAGACGTGAACGACTCGCCGATGTGGCAGGACCGCATCTTCCACGCCCTCGCCGTGCTC
TACGGCATCGTCTCCGTCGTCGCGCTTGTAAGTCGGCCCTCCCGCCTGACCCGAAACGCC
TTCCGATCTGTCACGTCCTGGGCCGATTCTGTGATTGCGTGAGCCCGTGCCCTCGATTGC
GCGGGTTGGCTTGATCCGTGCGTGCTTGGTTCCAAACTTGGGGATTCCGCAACGAATCGT
GAGGCTGGGTCATGAATTGTTGCAAATTGAATTTAAATTCGTGGACCTCCAATATTTGTT
GTAGGTCCAATTGATCAGAATCGAGTGTAGGGTGCCCGAGTACGGGTGGACGACGCAGAA
GGTGTTCCATTTCCTTAACTTCGTTGTGAATGGCGGTGGGTAACACATTTGTCCTGTTTC
ATTGGTTCGCCTTGCTTGTGTTTAGTTGTTTCGTTTCGTCGCTTGATCCTTCTAGTTGTG
TTTGCAGTGCGGTCCATCGTGTTTGTGCTGCGGCGAAACGTGCAGCTGATACAACCAGAG
GTTTGTGCCTGATTTGATGAATATATTGGTGTTTCCATTGATTGGGGGTAATGGTTTAAG
CAATGCGGCATCACAGATACTTCAACATGTGATTCTTGATATGCCTGGGCTTGCGTTCTT
CACTACATACGCGCTTTTGGTGCTATTCTGGGCCGAGATTTACTATCAGGTGCTAGACCA
GCTTGTGTTTCATAGTTTCTTGTGATGTTCCTCATTGTCGTTGCACCTGTTAATTTGTGA
AGTTGTTTGCTAGGCCCGTGCGATGTCGACTGATGGACTTAGGCCAACTTTCTATTGGAT
CAATGGGGTGGTGTACGCAATTCAGGTAACTTAGTATACATGAAATTTCTCATTACACTA
GTAACACAAATGACCTGACTCAGTTAGCTCATGTGTGAATCTTTGCACTGATGTCTGCCT
GGAAATATAAATGATGCAAAGATTATGTTATGCTGGCATGTAGGGGTGAATATCTGGACA
TTGACTACATCTCAGTACCTGTGAGCCTGTGATGCTTCCAAATTGCTTTAGATGCCTAGG
AGTGGGACCTATGTGGCTACGACCAATCAAATTAGCCTTGTACCTGTTTTGTTGCTATGA
CCATAAGTGATAGTTAATTAGTTATACATATTTAATATATTCCTTTTTTACGAGATTATA
TATTCTGTTCTGTTCCGGAAAGTGCATATGGTTGCAAGGCTCCAGGGAGCTCGTTATTTT
TTACATCGAAAATACATTTTCTACATCTAAATAAAATCTGAAAAAAGTATACACATAAGC
ATATATGTGTAGTATATACGTACAGAATTTCATGAACATACATGTTTATATGTAATGTAC
ACAAAAAGGACAAATACATAGATTAAAATGGGCCTTTTCTTTGTTGTATTTGGGCCAGTT
TTTTGTCTTTTTGTGCAGCCTGCAAATAATCGTATTATTTAATGAAACTTTACAGATACA
TAGAGAACATGTATAGTTATAGAAAAAAAATCTGAAACTTCTAAATATATTTTGATTTTT
TTCTTCAAAAAGGGCTCCCTGGAGCCTGTCCTATAGAACACCACATTAGTTTTGTTTGCC
CTTGATTACCTATATACTTTCTAGAAATCAGGCAATGGTACGCAGTATCCTTTTTTCGAG
AAAACGCAAAAGAATTTGCGTTTCATTGCATTGAACAGGAAGAAGACATCGGGGGTACAA
CCTCCAGAAAGGAGGGACACACAC