morexGenes - Barley RNA-seq Database

Contig contig_57132
Source Contig contig_57132
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57132 (8469 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_57132

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69899	5	2211 bp	MLOC_69899.1	Available	Available	LOC_Os05g38420.1, FRAME:+2, EVALUE:0.0, 13105.m04029 protein laccase precursor protein, putative, expressed
CDS Structure of MLOC_69899

Contig Sequence (8469 bp)

>contig_57132 8469 assembly3_WGSMorex_rbca.fasta
CTCCATAGGAAGATCTTAATATGGCGTAGGAATTTTTTTGATTTTTGCTACATTACCCCA
ACAAAGCAGTCAAGTAGTCCTTGATTTTCTGGGTTGGCTTCCTCACTCTCTCAGAACCAC
TGTTTGGTCTTGGAGGCAAGAAAGTTTCCCATGCTCCCTTTGTAGCAGTCGAAGCCCTTT
TTGCTGGTGCCTTACCCTTTGCAGCACCAGTGGCAGATCTAGTTGATGCTGTAGTGGCAA
AAGATGAAGCCACCCTTGCTTGTGCTAGTGCAGTGGTAGAAGATGGAGCCCTCCTTGCTT
GTGCTGGTGCAGTGGCAAAAGATGAAGTCCTCCTTGCTTGTGTTGGTGCAGTGGTAGAAG
ATGGGTCCCTCCTTACTTTGTCCTAATTCCATCAACCATGGTCCTTATTGGCTTAGCTCC
GACATCTAGGACCCACCTATTAAAAACCTCACTTAGATTGTTAACAACTAAGTCTGTCTT
GCAGTTCTTATCCATGGCATGTCTGGCCCAAGTGTGTTTGGGTATTTTGCTAAGCCACAC
CCAAGCTGCTTCACACTCACTCTTTAACTCATCCATGGCAACTTGAAAACCATGTTGAGT
ATATGAGTAACTTGTTGCATCCATGTATTTTTTTTAATTCTGGCCCTCTAAACCCATCAA
TTTGAAAGTTCTGGTAAATATGTCTAAGGCAAAACCTTTGTGGGCAATTGGGGAAGACTC
TATTTGTGGCTTTCAAAAGACCATGTATGAAAGAACTACAACTAAATGAAAATAACTACA
TGAAAGTAAGAACAACTAAATATATTACCTTCTGCCTATTTGAAATTATTGTGTAGTGTT
CAAACTTGCCACATTGGCCACCTATTGCTACCCTCAGCTGGTATAGAAACCAGGTCGAGG
AATCAGTGTCCTCCTTGTCTACAATTCCAAAAGCAATGGGAGAAATATTGTTGTTCCCAT
CTCTTCCAGTAGGAGCTAGAATTTTTTGACCAGTAGTGAGCTCTATGAAGCATCCATCCA
AACCTACAATATTAGCTCAAACAATTATTACTTGAAAGAACATATAAGTGGAAGAAACAA
CAATACAAGGCAGTTTCCTATGAATGGTCTACACCCATTGAGAAACCCTTCTTTGCATCC
ATTCACGCACATGAACAATCCATGAAACCTAGGATTCTTGCGAGGATGCTCCCTAATACA
TTTTGTTGTCACAATACATCTAGAACCTGGATTAGTTTCTAGGACAACCTGTAAATATCC
CTAATCCAGGTGTATTGGGCCTTCTGATCTCCTAAAACAACGTTCTTTGCTGCCTTCCTA
TCCCTGTAGGCCATGTGGGTTGATATATCCACTCTATATTTGCTCTTTGCGGTGTTAATT
ATTGTTGTTATTGTTGTGCATGGGTCATTCCTCACTACCTCCTCACAATGTTTTGCAACC
CACTTGGCAATGACTTTGGTGCTCTCTGACACAGAAGGGCATGTGTGCACCAAATACTAC
TTCCTAATGGTAAATGTCTTCTCATTTGCAATCTGGGAAGTTGCTATATAAAAAGGGCAT
TCCTCATCTATGCACTGTGCTATAACCCTGTCAATGTCGTTTCTATGGTACTCAAAGTTC
CTGTTGTGTGATATGTGCAGGGGTTGGAGTGCAATTCTGAACAGGTACACATCAATGAAG
CAAACATGCTTCATAAATTGGTCCTCTGGGTCAGCTCTGTCCTCATCATACCATAACCTT
GGCTTCATCTTCTTCGCTCTGCTCTTCCTACCAGTGTGCACCACATATGCCATTGCATCA
GCACCATCATCATCTTCCAAACCCATGTCCACTGGGTTTTTGTCCTCATCATCTGATCGT
ATCTAGTCCTCCTCAAACATCTGATCTATACTTTCATGTGATCTACTTATTGTCCCTTTT
CTATGTCTCTTGGCCTTATTCGTCTTCTGAATATGTTGCCCACTCTCTTGCTCCTCTTCC
TCCAATTTCCCCGCCTCTTGATCATCATCATCCCCTCCTTCACCTAATGGTTGATACAGT
TCCTCCTCCTCATCAGTATCCCACATCTCATCAACATATGTGCCCCCTTCATAATGCAGT
AATGGATTATCCCTCTGTTTTTTCATTTCCTCAAGCCTAGCAAGGATATCCCCATATTCT
AACAAATTGTCATCATCACCGTCCTCTTCATTGTCCATAACTGCAGATTTCCTTTTCATT
GAATTGCTTGTGCTCTCCTGTGTTTGAAACTATATTGGACGTGGTTGTTCTTCTGATGCT
GCATCTGAATTTTCTAGATCTACAGGATGTGCATTGAACAAAACTCCTTCTTCATCTACC
TGATACCGTTGGTGCTCTCCAATTTCCTACAGAGGGATCTGCTGCTCAACAACATTACCA
CTACTATTTATATCTGCAGGTTGGGGGGAACTGGCCCTAACAATTATCACATTGAATATC
TTTTGCTTCTGCATGACTATGTGGTCTAGAATTTCCACGAGCATGTCATCATCCTCTATT
TCTTGCATTCCTTCTATCCCTAGGCCAGGATCCTTCACATAGTGCATGTAGTACCTTAAA
CCATATCCTCCAGTCTCTATCATTGCTACTAGATTGTAAAATGTGATGTTTTTCAACATC
ATAGTTCTCCCAAGATTGTCTTTATCATGAAAATGCATCATCCTCAATTCACAAACCACA
TCATCCAGACTGGAAATTTAAAAAGAAACATAGTGTTCAATTATAACAGTTATGAAAAAG
CAGAACAACAATAAACTAGAGCAACAGACAACACCTAATTCCAACTAAATAACCCTAGCT
TATTTCAACTAAATAAGACACAAACAACACCTAAATTCACTATAGGGCCAACAATATGCA
ATAATTATCCTAACCTTAACCTTAATGTAAGAGAATGTAATGGAGAAGGGGAAGGGGATC
TCACTATAGGCCGCCGACGGATGAGGCAATGTGGTGGCTTCCGCTCGGATTGCCCTTCAA
CGCCACGGCGAAGGATCTAGCCGTCGCGTATTCCACCGAATACCGCACCTCCGCATTGGG
TGTCGCCTTGCTAGGGTTCGAGTTCCCGTAGAGCTCGCCGCCTGGGTCGGGATCCGCGTC
GCCTGCGCCATTGTCGGGATGCCCACCGCCGCAAACACCGTCTGCTTTCACCAGAGTATC
CATCTGGGTGAGTGAGCGAGTAGGAGAGGGGGGAAGAAGGGGGAAAGCGGGCAGACGCGG
GGGACAAAAAACAGAGAGGAGATGGAGGAAGACGGATCCGTCTCACGCGGTCTAACGGCT
ATCGGGACGGCTGTGCCATGTAGGCAAAAAACGGGCCCCACTTGTCATAAATGGGCTTAA
CTGACGCTGATCCGTTGATCAGTGATTTTTTGTAAAAAGATTACACAAGACATGGTTTTT
TCTGGAAAAAATGTATTATAGTGTTTGCTGCAAAACTCGCCTTCGAAATGATGGTTTTCT
GCGGTTTACTCGAGAAAATACACAAGAAACGCAAACGACTACTCCATGCATCATTCGCAT
ATACTGTACATATGCTGACTCTGATTAGATTGCATGATTAGATTGCATCTACTGTATATA
TATTCCATGCACGTACACGCGCTGAAAAGCGCCTTGCAAAAGGCGGCTGAAAAGGCAAAA
AGGAGGACAATGCATGGCGAGCAAGCAAAACCGGGCGGGTTGGTTCAGCCATCCCCTTCC
GCGCCCGCCCGCCAGCCCAGCCCATTGGGAGGAGGACGAAAAGACACGAGTGTGTGTGTC
TGTGTGAGTACCTGCTAACCATCACGCACACGGACAATATTTACCTACCTCCGTCTCCCT
CGGTTGATCACCGTATCTCTCGATCTCAGTTCAGAACGAATTTTTGTCCGTGAGAGCACA
AAAGTGCAAAGCTGCAGGCTGCAGCCACGGGACCAGCAACAGACGAACATGTATCACCTT
CCGCCTATCCTAGTTGGTCATGTCCATATCTTCACCAAGCTCTTTTTGAGTTGCTTGCGT
GCAGTCGCTTGGCATGTAAGTTGGGGTTAGCTGGAGAGAAAGTTGCATGAGACCTGACTT
TGCAGAGAGAGAAGGGATGCGGTGCCCTCGCGGCCACTGGCTAGAGCGTATGAGCTTTAG
CTCGCCTCCCATCTCTTCTCAAAAGTGTGAGAGGATTCAGCTCAACCACTGCTGATTTAA
CGCATTTTCTATGGGGTTAGGTGGGAGCTAGCTAGCCGAAAAGGGATCTACTAATTAAAT
CTATCACCACTCAATCGGTCAATAAACCAAACCATTATTTTTATAGACAGGTCAATTGGC
AATGCAGTACCAGTGTCTCTTCTGTACATCGCACTTTCTTTAATGACCTAATTTTAACGA
TATACTACATTATTCAACTTGATCAGTGATATCCAACACTGCAAATTCGATTTCTATATG
TTTTTCTTTTCAAAAGAAGGTTGGAATTCCATCATTATAAGATACTCCCTTTGTCCGGAA
ATGCTCTAGAGTTCTAGGCGTAGTTCTAGATATATTTATTTTTATTCATTTTTCTGATAA
ATATAGCATTACTTGCAAAATAAAAAAATACCATAAAGAAGGATTAAACATCTTCGCGTC
ATCATCATCATTTGGCACTCGTGACCCCGATCAGTAAAGGACAGAAGAAGAGTTTTTACC
CCGGACGAACCAGTATTCCAATTAACATCTTGATGACGGACTGTTCTATCTCAATATACT
CCATGCATGCCAGACAAAAATGGTGGGATGTCTTCCTACCCTAGACTGCCTCAACTGATT
GAGAAAGATGAATTGGTCTGTTTAATCCTTGTCCTACCTACAGTAGAGTTCGTCTTCTGG
GGCGGGATATTATACTTGCCGTGCTTAGTACATGCCAGAAACAAAATCGTGCGTGATAAT
TAAGGAACAAGGAAGAGCAGTAGCTGTCTTAAACAAGAGGACACAGCTCAGATAGAAGAA
GAGCAGCAGCAGCAGCAGCGGCAGCTGGTTGACTTTAATTTGGCCACACTCCAAAGCTAC
AAGTCCATGTAATATGCGTGCATGGGCCAGCCCCGTTCAACTGCCGCCAGCCGCGACGTC
GAGCCCAACTCCCGCGTGCAAATCCATGCTCATCATCATCATCAAATCCAAACACAGCAC
ACTTGCACACACAACTCGCGCTCTCTTTTGACACCACCAAACGATCGAAAGTAACTAAAC
GAACCGAAAACAAAAGTTATTGGGGTTGCTTTGGCCCCACTCATCATTCATACATCTCAT
CGGCCAATGGTTTTCGAGTATATATAGAGAGCCCGAGCGCCTCCATTACCATCACCATTC
ACCAAGCAGAGCAGAGCAGAGCAACACGAGAGGAAGAGCAGCAATGGCCGTCTCCAGCAG
CTCGTCGCTTCTCCCTCGCTGTCTCCTCGCCGCGGCGCTGGCCCTCTGCGCGGCGGCGAC
GATGGGCGCCGCCCAAGCCGTCACCAGGAAGTACCACTTCGATGTAAGCGCAGCGTGCAT
GCACACCCATGTCTAGCCCATTAATTATCCATGTTATTGCATGCATGCGTGCATGGCTAA
CCGGTGAACTGACCGTACGTAAAATGGCGGCATGGCGTACGTGCGGTGCAGGTGGGAATG
ACGAGCGTGACGCGGCTGTGCGGCACCAAGAGCATGGCGACGGTGAACGGACAGTTCCCG
GGGCCTACGCTGTTCGCGCGGGAGGGCGACCACGTGGAGGTCGACGTGGTAAACAACTCC
CCCTACAACATGAGCATCCACTGGCACGGCGTGCGGCAGCTGCTCAGCGGGTGGTACGAC
GGTCCATCCTACGTGACGCAGTGCCCGATACAGCCCGGCCAGAGCTACGTCTACCGGTTC
CAGATCGTCGGGCAGCGGGGCACGCTCTGGTGGCACGCGCACATCTCCTGGCTCCGCGCC
ACCGTGCACGGCCCCATCGTCATCCTCCCGCCCGCCGGCGTGCCCTACCCGTTCCCGGCG
CCGGAGAGGGAGGTTCCCCTCATGTTCGGCGAGTGGTGGAGGAACGACACCGAGGCGGTC
ATCGCCCAGGCGCTGCAGACCGGCGGGGGCCCTAATGTGTCCGACGCTTATACGATGAAC
GGACTCCCTGGCCCGCTCTACGCATGCTCGGCCAAGGACACGTTTAGGCTGAAGGTGAAG
CCTGGTAAGACGTACATGCTCCGGCTCATCAACGCCGCGCTCAACGACGAGCTCTTCTTC
GCCGTCGCCAACCACACGCTCACCGTCGTCGACGTCGACGCGCTCTACGTCAAGCCCTTC
GCCGTCGAGACCCTCATCATCGCGCCGGGCCAGACCAGCAACGTGCTCCTCACGGCCAAG
CCGGACTACCCCGGCGCCAGGTACTACATGCTGGCCCGCCCCTACACCAACACGCAGGGC
ACCTTCGACAACACCACCGTCGCCGGCATCCTCGAGTACGAGCATCAGGACCCCGCCACC
GCCAAGAACCTGCCCATCTTCAGGCCGACCCTGCCGCAGATCAACGACACCAACGCCGTG
GCCAACTACACCGCGAAGCTGCGCAGCCTGGCGAGCGCCGCGTACCCGGCGACCGTGCCG
CAGGTGGTGGACCGGGAGTTCCTTTTCACCGTCGGCCTCGGCACCCACCCGTGCGCGCCC
GGCTCCCCCGTGAACGGGAGCACGTGCCAGGGCCCCAACGGGACGTCCCGGTTCGCGGCG
TCCATCAACAACGTCTCCTTCGTGCTCCCGACGACGGCGCTGCTGCAGTCGCACTACACC
GGGATGTCCAAGGGCGTGTACGCCTCCAACTTCCCCTTCGCGCCGCCGCACCCGTTCAAC
TACACGGGGACGCCGCCCAACAACACGAACGTGATGACCGGGACGAAGGCGCTGGTGCTG
CCGTTCGGCACCGCCGTGGAGCTGGTGATGCAGGACACCAGCATCCTCGGCGCCGAGAGC
CACCCGCTGCACCTGCACGGCTTCAACTTCTTCGTCGTCGGCCAAGGCTTCGGCAACTAC
GACCCGGCCAAGGACCCGGCCAAGTACAACCTCGTCGACCCCGTCGAGCGCAACACCGTC
GGCGTCCCCGCCGGCGGCTGGGTCGCCATCCGCTTCCGAGCCGACAACCCAGGTCCGTTC
GCACACATGCATGCATACTTGCATGGAGGCTTCAACCTTCATTAACCGTATACTGTACAT
GCGGATCAAACCTAACTTCTCGTATGTACGGACACGCGATCGTGCATTACTCTGGCAGGT
GTATGGTTCATGCATTGCCACTTGGAGGTGCACATGAGCTGGGGGCTGAAGATGGCGTGG
CTGGTGCTGGACGGTAACCTTCCGAACCAGAAGCTCCCGCCGCCGCCGGCAGATCTTCCG
AAATGCTAGACGTGAAGATCAAGATCGATCGTCGGTGAAGAAGATTGCCCGCTTCGTTGC
TTCGCTCCCGCCTCACATTGTTATCCGCAATCTTTTGCTCCCGCGTGTCCAGCGAGTTCG
TCTCCAATATGGTGATGTGTTTTTTTTCTTACGCTAATTGATTTTTCAGGCGATTCGCCG
TGCTTGTTGTATGCACTTTATTCATTGCCAGAGTGTTGTCAGGACTTTTCTTAAGTGGCT
GGGCTTCTTTGTAACTTGCAACTGAAAGGTCTTACATTTTTTTCTATCTGTATATGTATC
TGCAGCGTATCGCTAAATAAAGCCTAGATGTGTTCATTGTCAGGAAAGTATTTTGAAGTT
TATGGGCTTTATCCTATTTAACAAATAGTTAATGGATAAATCTCAAAGATCCATAATTAA
TCTTTGCATGACATCTGCTATGTTTTAGTCTGACTTTAATAAAAACTTGAAGAGTGGAGG
GGAGTTGAGTGGACCAAATCTTTTATTCCTGCTCGCTGCAGTGGGCAATATCATAAATCT
TGCATACGTGATAGCAAAGGAAGGTGTCCATAAACCCTTGTATTACTCCGTATGTTTAGA
TTAGGGGAAAGGGGAGTTAATAGGTAAGATTCCCTAGGATTTACAACTCATTGTCTATTT
TTTTTAACCATGCAATGCAAGTCATGATTGCAAGACATAAATTACATTTTTACATTATTT
TATACATGTAATGTTGTCACGTCATCAATTCATGCATGTCAGTCCTATGTTATTTTTTGC
ATTAGAGTTCATACTTCACATTTTGTTAGAAATGTAATTCTTTTAACTGCATTTTTTTTC
ATTTTCATACGCTCCATGGTTTTTGAGCTTATAATTGATTTTCATAAGTTTTAGATGTTT
TTGTAGCACCTATTCATGCAATTTGTTTAACAAGGTTCCCGCGACAATACGTGATGCATG
ATCGTAGTTATAAGGGCGTGTTTGGTTCCCTGGGTAGCTTGTGGCTGCATCGCATGAGGG
ATCCAGGATGAGCATGGCCAGGTTGACTTGATGCAAAGATGAGAAGAGATGAGCGTAATA
ACTTCGTAT