morexGenes - Barley RNA-seq Database

Contig contig_57109
Source Contig contig_57109
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57109 (7211 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_57109

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69884	1	428 bp	MLOC_69884.1	Available	Available	None
MLOC_69885	1	423 bp	None	Available	Available	None
CDS Structure of MLOC_69884

CDS Structure of MLOC_69885

Contig Sequence (7211 bp)

>contig_57109 7211 assembly3_WGSMorex_rbca.fasta
TAGAGTTAGTTTAGGTTTAGTCATGAGCTAGAAACTAACTCTAACCACTAGCTAAGCTAG
AGTATCCAAACAGGGCCGTAGTTCTTAGTGAGCACGTGGCTACAGACATCGGCATGCATG
TTGAAAGGAGAGCTTCGCTTAAGGAAAAAAGTCTATTTTAAACCCTGTATTCATAGAGGT
TCGACGAATCAAACCCTCAAGTCCAAATCCCAACCGTTTGTACCCTGAACTATACAATCC
CGATCTAAATTAAACCCTGAGACAGGGATTTGGCTGACCGATGGGCCAGGGAGGAAACGC
GTTGGGTCGGCCCATTTGTTTTTTTGTCTGTTGGTCTGCTTAAAAATGCATGCAAGATGA
TTCAATTCGGTGGAATTTTCATTTGAAAATTCGTGAACTCCACAGCCTCGAGCTCCTGAA
CTCCATAGCCAACAGCCAACAACTAGCTTCTCCTAGAAAAAACCGTAGTCAACCGATTGT
TCGAGAAATTTTTCTTCCAGGCTGAAAGCCGATTTAGCTGTATTTGGCCCACTACACTAT
AGTGGTTGTGAGGATCAAACAATTGACTTCCTTTGCCCCAAGCATGACATCAGATCTCTT
CTTCCATCACCCCAAGCATCCACAAGCACCAATGACAAGAGCGACACTAGCTTGCCCCAC
TTCACTCACAATGAGACGCACCATGCTGAAACCATCACATGCAGCTGTTAGTTTGGGGTG
TCGTCTCGATGTGACCGAGCTTGAAGTCGGGGTCCTTGTTTGCCGGGATGTGGCCCAGCT
TCGAGAGCAGCGTGCTGCCTCTCTCATCGCCACTTCTCCTTCTTCCTCACAATCTCTATC
ATCTCTCTCAAGCTAGGAAGGCTCTTCTTCTAAGTGAGGAACGACCGTCGAGTGGGAGCA
CCGGGCACTGTCATTCCTTGGGACATCGTGCGGAGGCAATGACTCCAAGAAGAAGCATGT
GTGTTTTTCAGATGTGTCCATCCAATCTTTTGGGTCATTTCAACTCCTCCCTTCACCCTC
CATCCCTTTTGTAGCACTAATCTTGACATGTGTATCAGCATGTTTGTTTTTTGTTATGCA
TGTAGATTAGGTGTCCATGTAGCCAATTGTACTCCTTCAAGGAGTACAAAGCCGGCGAGT
TTCTAAGGAGGCGCGCGAGGAGAGATGTGATGCGGCGAGAATGGCGAGATGTTGATCGTG
CTACACGATATAGTACCTTCGTGAGAAGGACAAGACGCGAGGAAGACTGAAGCATGACAG
ACTGCAAAACGAGTCAGGTGAACTGGCTAGTCGTTCGGTTTGTTAGTTGTGCATGCATGA
GTTTGTTATGTCCTAGCCGAGAGAATTGTGGGGTAAGTAGTTCGTGTATGCATGTATAGT
TGGATTGGTCACCGGTCGTAGCCAAGCCATATGCATAATGGAGATACTCTCGGACATGGT
TAGTGGGTTAGTGGCTGAGAATTAATGTCGGCTAGTTAGGGTGTGCGTGATGCTTACCTT
CTGTGTACATATATGTTACTTTGAGTCAATGAGAAAAACAAGGCCGTGCGGGCTGACCGA
AACTATGTAGCTAATATGTTCTATAAGGAGAAGAGCCTTCAAGCAAAGCTCTATGCTCCT
TCTTGCTATACGTGTGTGTCTGTGTGCGTGTGCGTGTGCGTGTGTGCGTGTGCGTGCGTG
CGTGCGTGTGTGTTTTCTTATCTTCGAGAGAAAAGAGTGAAGCTTGCGAGAGATGATAGA
GATTGTGAGGAAGAAGAAGAAGCAACACTGAGAGACGCATCGCCAACAATTAACATCAAA
GCCTTCTCGATCTGAGGCGGTGGCGGCACCGTAGTGGAGTCCACATAACGTGGAGGACAA
CAACGTGAGGTGGTGGCATCGGCGGTGTGATGTTGTCGGTGGCCGTTCGTAGTGCGATGC
CAAGAGATGGCAGATGTGAGTGGCACGACAGCATTGTGACCGGCACGGCGGTGGCGTCAT
CCAAAACGATATGGTGCACGGTGGTAATCGGTGTTGTGATGGTGTTCTCCAAGGCACGTG
TGTGCGCGTGATCCGCATCAGAGATTGCGATATATCAAGATCAGAACACCTAAATAATTC
CAATGTTGGATATTACATGGATATCATAAGAAGGTTTCATTACTAGACCTACAGTATCCA
TTGTTGTTGTACATGACGTCATAGTGCAACTCTAGGTGACACAGACTATGCAGTAACAAT
GCATATAGTATGGGATATCGACCCTACAGAAAGAATTCAAGATATCTTTTCCCCATTTTT
GCTGGCAGGACAACCGACATTGTGACTCCGTGCATACATGAGCTCCAAATGCAACTCCAC
TAAAACATTGCTCTGTGTAGAGAAGAACACACATAATTAAAATAAGTCCATATGGAAAAA
CTTCCAGAGATATTTGTGTAGTTCATCTGAAAATATTATTCTAGTCTGGTTGATACCTGA
AAGGAAATATATATAGGGAAAGGGAGAGCAATTTCTTACCAACATGAATAGAATTTCCGA
GCTGCACAATCACCAGGAGGCAAAGAAGAATAGTTCTCCCTTCCATTACACTAGACAGAA
TGATCTTCTCCTCTCAGTTTTGGTGTACAAAAGCGTACCCAATTATATCTTTATATATAG
ACTTGTAGCTCGAGACCATTTACTCCATATCTCACTCAATATTTTCTCCCTCCATAAGAT
ATATACACAAAGTTGTTCTTATCGTTTCTTTCTTGTGCATCCAGAAGAATACTTGATTTT
ATGTCTATATATTGACTTGTGTGTAGACAACATTTACTCCCGGGTCACCGAAATGAGGTC
AAAAAGATCTGACCATATCCCTGCATTTACACCCGATTCACTCAAATAAGATCGAGAAGA
TTTGAACTTATCACCGCCCTTATTTTTTACATACGAATTGGTTCTATATTTAAGATGGTA
TCCGTTTAATGTTATGTACTTAATATGTTTATATATATACTGATCTAAATTTGGGAAATA
CACTAGACTGTGCACGGTTGGATCTGATCCGATCACATTGAAACCAAGTTAATAGCTTAA
AACTATAACTTTTCGGGCAAAAGTTCCATAGAACTACAACAAAGTAGTTTTTTCATTTCA
AATGCGGGTAGTGGGTGGGTGGAGTGGATCTCGGGTTGTGCTGCGTTTGTTCGTTGCAAG
CAGCTGAAGCAGTTTTTTTTAGAATGGAAGGATAGACCCCCGGTCTCTGCATCTAGACGA
TGCATATAACCATTTTATTAATTATTCACGGAGATCATACAAAGTAGTACATCAGTCGGC
CTGAAGCTATACACTATACACATATTCACAGAGACCATTTTGGACTTGTAAGGTTTATGA
AATTTAGTCATCTCTTTGAACCCAGGCTGTCATCAATAATGATACACATATACACATATA
TTTCTTTCATTTATGCCAATGCGTCGACGACTACTGCTACCCCAACTACGTGGAGGCTGA
TGAGTAGTTAGTAGGCTCCCAGGCAGGAGGCCGTGCCTTTTAGATCCATGTTGTTTTGTG
CTAGCCTTCTTAATGCAAACTTGTTTGCCTATGTCTGTACTCAGATATTGTTGGTTCCGC
TGACTCGTTTATAGTCGAGCTTATATATTCGAGCCTCCGAGGCCCCTGGATCGTAATATA
AAGCTTCTAATATTTTATTTGTATCTAGAGTTGTGTTATGATGTCTTCCTGTGAATCCCT
GATCATGATCGTACGCATTTGCGTGTATAATTAGGATACAATGTGGGGGCGTCACAGTGA
ACTGCGAGTTGTTCGGTTTGTTAGGTGTGCATGCGTGAGTTTGTTATGTCCTAGCCGAGA
GAATAGTTGAGTAAGTAGTTCGTGCATGCATGTATAATGGAGATACTTTCGGACGTGGTT
ACTCCATGAAGTGCGTTAGGGCATGGGTTAGTGGGTTAGTGGCTGAGAATGTCGGCTAGC
TAGGGTGTGCGTCAGGCTCGCCTCCTGTGTACATATATGTTACTTTGAGTCAATCAGAAA
AACAAGGCCGTGCGGGCTGATCGAAACTATGTATCCAGTATGTTCACAAAGGAGAAGAGC
CTTCAACCAAAGCTCTGTGCTCCTTGGTATATTGTGTGTGTATGTGTGTTCTTATCTTCG
AGAGAAAAGAGTGAACCTTGCGAGAGATGCTAGAGATTATGAGGAAGAAGAAGAAGCAAC
ACTGAGAAAGGCATCGCCAATAATTAGCATCAGAGCCTTCTCGATCCCAGGCGGTGGCGG
CACTGCAGTGGAGTCCATGTGACGTAGCGGACGACAACGTGAGCTGGTGGCCATCGGTGG
CGTGATTTCGTCAATGGCCGTTCGTAGCGTGATACCATTAGATGGAGACGGTGTGCTTTT
TGGCCTCACGGAGACGTCGTTCACGTCAAGGGATGGACACTGTGTGTGGCACGACAGCAT
TGTGACCGGCGCGGTGGTGGCGTCATCCAGAACGATATAGTGCACGGTGGTAATCGGTGT
TATGATGGTGTTGTCCACGGCAAGTGTTTGCGGGTGATCCTCATCAGAGATTGTGATATA
TCAAGAACACCTAAATAATTCCATTGTTGGATATTACATGCATACCATAAGAAGGTTTCA
TTACTTGACCTACATTATCCATTGTTGGACATGACTTCATAGTGCAACTCTAGGTGATAC
AGACTATGCAGTAACAATGGAGATAGTTTGGGATATCGACCCTACAGAAAGAATTCAGGA
TATCTTTTCCCCATTTTTGCTCGCAGGACAACCGACATTGTGATTCCCTACATACATGAG
CTCCAAATGCAACTCCACTAAAACATTGCTCTGTAGAGAAGAACACACATAATTAAAATA
AGTCCATATTGAAAAAATTCCAAAGATATTTGTGTAGTTCATCTGACAATATTATTCTAC
TCTGGTTGATGCCTGAAAGGAAATATATATAGGGAAAGGGAGAGCAATTTCTTACCAACA
TGAATGGAATTTCCGAGCTGCACAATCACCATGAGGCAAAGAAGAATAGCTTTGCCTTCC
ATTAGACTAGACACTATGATCTTCTTCTCCTCTCAGTTTTGGTGTACAAAAGCGTACCCA
ATTATATCTTTATATATAGACTTGTAGCTCGAGACCATTTACTCCATATCTCACTCAATA
TTTTCTCCCTCCATAAGATATATACACAAAGTTGTTCTTATCGTTTTTTTTCTTGTGCAT
CCAGAAGAATACTTGATTTTATGTCTATATATTAACTTCTGGGTAGACAAGATTTACTCC
TGGCTCACCGAAAGGAGATAAAAAAGATCTGACCATATCCCTACATTTACTCCCGGTTCA
CACAAATAAGATCGATAAGATTTAACCTTATCACGGCCCTTAATTTGTAGTACATACGAA
TTGGTTCTATATTTAAGATAGTATCCATTTAATGTTATGTACTAAATATGTTTATATATG
TACTGATATAAATTTTGGAGATACACTAGACTGTACACGATTGAATGTGATCCCATCACA
CTGAAATCGAGTTAATAGCTTAAAACTATAACTTTTCGGGTAAAAGTTCCATAGAACTAC
CTTTTTCACATAAAACTACAGCAAAGTTGATTTTCCATTTGAAAGGCGGGTAGGTGGGCA
GTAATACCGCCAAGCCCATGAAGTGGTAGTACTCCCCCAAATCTCCGGTGCCCGTCGACA
CGTCCGTTGATCCTGAGCACTGGCCCCCTTCCCCGGAACGACGATATGCTGTGATTTCGG
CCCAGTGACACTACTGCAGGAGTGCTTAGCAGTGGCAAGCATAAAAAGAACAGCAATGGG
GGATCAGGCGCAACTAGTTGTGCCTGTCATTGACCTTCCACCACTGCTATAACTGCATCA
ATGGAGGGTGCCCGCCCGCCACTGGTAAAAACTTTGAAGTCGAGGGCTGTGCGGGATTGC
CCGCCACTCTCTTGTGCAATCTGAAGTGAAGGGTGGTTGGTACAGCCTGCCATTTCTCCA
TTCACTAGGGTTAAAAGAATATTCAGAAGTAGTCATTATTAACACGCATTAACATAAATG
AATGAAAAACACACATGTGTGTGTGTATATATATATACACATGACATCATGAGTTTAAAC
AGATGACTAAATTTCATAAACCTTACATGTCCAAAACGAGCTGCTTGATCGAGAGCAATA
GTCATAAAACTAAAGATTAAACTAGAGGAGTTTAATCTTACAACAATACTATTAATGAGT
AGAATCTGATGGTGGGGGCGGCATTCTCGGCGGAAGTATTCCGACAACACATCCCCATCG
GGCTCTCTAAGTCTGGCAAGAAGATGTCACTTGTTGCAGCGCCCATTCAAGTACCAAGTT
GGGACTACTCTGAGGCGGCATCCGAGTGCTCTTTGCAGGATTGTCCTCCGAGAAGATGAT
GCGCGCACCAACTTTTAATTGTGTTTGGGCATAACTCTTGCACATATGACCTCGTGCTCC
TATAGACTATTCTCCCGTGTTATAATCTCCGCTTCTTCCAGTTCCTCTCTCTTCATGCAA
CACTACACTGTCAATCTTTTTTTCCGCACCAACAACTTCCTCCGCCACTGCAACTCCTGT
TCACGAGAACGTCTTGATGAGGACATGGCTACCTTGAATATGACCGAAAATATTTTATAT
TTAGATATTTGTGTGGTGATTTCTTATAATAATTATGTAATAATTTATTTATATTATCCG
GAATAAAAATACTACACCTATTTTTATTCCATGCCTAAATGCAGAATTATCAAACTATTG
CACCAACCACGTGTGAAGATAAAGGAAGAGGAAATGATTAGGTGTTGTTCAAGAAGTCCT
CTCACATCTAAGGAAATCATTGTGTGCTGTTCAAGAAGTTCTCTCACGTCACTTTTAGCC
CGAGAGAAAATAAAGTCCAAGTTTCTCACGTTATGGACTCAGATTCGGACTACACAGACA
TAACTGTCTCAAAACGTCAACAACGTTTTCATACGGACTCCGAATTGGGTGATTTTTTTT
GTTGGAAAGTAGATTTTATGTACGTTCCAGCCCAATTGGAATCACCTTAAAATTGGTTCC
AAGCATGGATATATTGACGAAATAATCTAATGTTTCACCCGAATCCGAGTGAAACTACAA
GTCCAAAGGTGTTGCATCACCTCCCCTTGGACCCATAGGCCTTGTACGACCTAGGGTTAG
TTGTAGGCTGC