Map Locations of contig_57106 (8640 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_57106

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69883 11 3662 bp AK360628 Available Available None
MLOC_69882 1 418 bp MLOC_69882.1 Available Available None





CDS Structure of MLOC_69883






CDS Structure of MLOC_69882






Contig Sequence (8640 bp)

>contig_57106 8640 assembly3_WGSMorex_rbca.fasta
CGCCACCGTCGTCGACAGCAGTCAGGCCTCCTCCACGGCGGCGCTGCGACGAAAGGGCGT
GCGCGGCGGCCTTCCGCTGGCCCCTGTGGAGGAGGAGGACGCCGCCGTCGACACCAGTCA
GGCCTCCTCCTCCACGGCGGCGCTGCGACGAGAGGGCGTGCGCGGAAGCCTTGCGCTAGG
CCACGAGGAGGAGGAGGAGGTGCCGCGAGGACAGGCCGTTGCGCTGGGCCGTCAGGAGGA
TGCTACCAGCCGCACCAAAGTGCTGGTCCTCCGAGGTGGGCACGGGACGCGCGGCGGCCT
TCCGCTGGAGGAGCCTACCGACGGCATCCAAGGGTTGCCCACACCAGGCCTGCGCTCCTC
CACAGGGGCCCCTCCGAGGTGGAGACAGAACGCGCGGCGGCCTTCCGCCGGAGGAGCCTA
CCGGCGGCATCCAAGGGCTGCCCACACCAGGTTTGCGCTCCTCCACGGCCGCCCTTCCCA
CGCGCGGCGTTGTCCTCAACCCGCAAGCGATGATGCCGTGCGGCTCCTCGTCGTCAGCGG
ACAACAAAGAAGGTGGGCTAAGCACCGATGCCGATGAGAAGAAGTAATTTCAGGCAATCC
TGCAGAATCTGAACACGAACGAGCCTGCGTCCATCCGTTCTAGAGTAGAAAATGCAATAA
CAGATGTGACCAAACAGTGCCGCTAGAGGTAGTACCGCTGCTTGGTGAACCATCTTGGCT
CATGGTGAAGTAGAAAGAAGATGTGATATACCTAACACCAGTCAGCTACAATGCTAGAAT
GGATAGTTGAAATGCACACGTATTCCATTGATTATTGTTCAAATAGCATACATTGGCTGG
GAGTACACAACAGAATAGCTAAATAAATGGGTGGGCTACATCCAAGTTAGACATGTGCTA
ATACTGTTGAGTATTGAGTCGTGGGTTGGTGCTCCGCCTGTCGTATGAATAGGGAATGTC
AAACCGTCAGTACAGGACATGCACAATTGTCAAACCGTAGATAACAAATCTATACAGTTA
CTAACATGGTGACACTGTCTTTTGGGAGATGAGCAATCCTTCCTATTATTTGTTATGTTT
CATCATTCATGATTGCATAAAAAAATTAAGGGGTTTGTCAAGACTACCATTTTGAATCTT
CAAAATTAAAATCATTCAATGATAACATAACTACTATAGACATATTGTGGAATCACGTTC
TTTGACAGGACTGCCCACAAACACACATTTCAGAATTTCAAATAGACTGCCGGAGGCAGA
CAAACCTGTTGAAACTGAGTCTTGTATAACACATAAATGTATGCTAGAAAAATGACCACT
GTCTCAAACAAAAATATTCCATCCAGAAATAGAAGGTGCAACGCTTCTCAAGATTTATCT
CTGGCCGAGAATTTGTTCAACAGTATGTGGATTGCGTGATACAAGATCAACATCATTGGT
TCGTAGTATAAAAGCACTTCTCACCGATATCGATTTTGTATCAAATAATCCACATATAGT
TGGACTAATTGCTGGTCAAAATAGTGTGCCTCATATTTCTGGATGAAGGGAGTCGAAGGA
TATCTGTGAGGAAGAACCAAAAACCTGAGACACTTCCAAAGGAAGCTATAGATTCAATAA
AGCCGTCCAGAGCTGGAAAAGGAGATCTCCCGTAAGTGTATGCTTGAGGAAAATCATTTC
GGTAAGTATCAATGGCAACCCGGTAGTTTTTTCCTTGAATCTAAGAATGGCACATTAGAG
AAAAAAATCATACATAAACTCAACATAGTAAAAATACATCAGCAATGAAACCACAAATAC
TCACTCGTGTAATGCTGGCTTCAGTGTCAAAATGCAATACTTTCTTGCATTCCAAATCAA
GTTTGCAGATCAAAAGCTTATCGCAGTCATCATCTAGTCTGCAAATAAGTGACTCCATAA
ATAGTTCCTTGTCATTCTGTAAACAATTAGAACATCATATCAGCCTATCAGATGCACTAT
TGAGATAAACCTCGCAAGTTTGCATGTGGTCAACAGTGGGTAACATTAGGGGTGAAAGAT
AATGACGGACAGGAAAAGGGAACCAGATACTATATAGCATCACCATCACATGAAAACCTG
CACCTGTCAAGTTGATTTGTCTGTAAGACTGCAAGCACATAGGGACTGCAGTGCAGACCA
AAATCTAATCGCCGACTGCATTTCAGTATTTATTTAAATTCCACATGCCAAAAGATATTA
AAAACTGTTGACGAACCCACATTTCGAAGGTTGCATGAGTCGATACTTGATTTTGATTTG
AAAAAAAAACTGCCTCCACCAGACTGTTTTTAAAAAGCTGGTTTGGAACCTCATTAAGTT
GCATTATATATTTGGAAACAGTGCTACAAAATACTTTCAGATATAATATTAAATTCTTTA
TTTTACCTTCTGCAATGCATTGCCATTTTATAGTTTTAATTGACAATGCGATAATAGTTT
TTCATGGAATTTCAAGATTTGTTACATGTACACAAGAGAACCGAGTGTCACTCATTTTGG
CTAGGTGCATGTCCACTCCTACCCACCCGCCTTCGGGTCCTGGACTCCGCAGGCATCTCA
CAGTTTTCTCCCATTTTAAATAAGAAATCTGCAGGGTACTAGCCCATGTAGGTCTACATG
TACAGAATGCATCTTTTTTATTAAAAGAAAAGTCACAAGGCCCAGTACCTGTAAACCTAG
TCTTTTACACATAATTAGTACATGTAAACACATAGTTCAGAGCTTCTTTGAAAATATTAT
CGTTTATATCCCAATCACGCCGGTCCAGGAGGGGGGAGACGATCGGGATGGAGGACCCTG
CACCCCGCACACCACCTTCCCCTTTGCTTCCAGCGTGACAAACTTCTGCTGCGACATCTC
CGACGGCAGAGTCGTGCTCTCTGGCCAGCAGGAGACCGTCCTGTTTCCCCGCAGCATGCT
ATTTCTACACTACATTGGGCAGCAGGAGACCGACAGGGAGCAACATTGTGCACACCAGCA
CGCCCCAAGCCGCACCGCAGCATGCGTCTCCCTCAACGGTAAGCCAAACGGTGTGAGTTT
TGGTTGCCACGTCATCACTTATAGCAGGACCCACCCACCGGTTAGATTCAGCGTCACTCA
GTGCTTAATTGTGTGATTCATGTTTTCTGCAAAAGGACTATTGGATGCTGGTTGATTTTT
GCAACAAAAAAAGGTGTTGTTTTTTTTACTCGGTGGACACAATTGTGGTGATTTTTTGCA
ATTAAGTCATCCATTAAAGCCATATCTTTTATCTAGCATAAAAACGAGCCTGTGGTCAAG
AGCTGCTTACCATGTTCTTACATTTGAAACGTCCAGTAGCCACAAGAAATGACTTTTTCC
CAGACTTTGATGAGAAGGCTAAACGGAAGCAACGATTACGAGAGTATACAGCAGTATCCA
CAAAGAGCTGATCAACAGGTTGTGCGCCACTGCTATCTTTTGTAATATACAATTTATCAA
GGTTGGGATTGGCTGCACGTTGAGCGGCAATCCGAGAGCATATCTGTGGAGAAGAATAAT
ATTTCATTCTGGAAGCCACAGGAAGCAATACAGTTTATCAAGGTTAGAACATGCAACACA
ATCAAACTCTACCCTTGAACCCCAAAGGATGCGAAGAAATCTATTTCTCTGAACATAAAC
CCCATTGCCAAAAAAACATCTTAAGCATATACTGGGAAACATATAGTCTCCATTTAAATT
CAAGTTTTCTTTTCGTTTTTCTAACATCAATGCTATATTTTCATTACAAAAGGAAACAGA
AAATGAATTGACTAGCTGTCAGTCCTGAAATGTGGTAAGTCTCTGAAATGTGGCAAATGA
GCTCTTTGTTCTATGTCTTAATCTTTGACTTGTTCTTTTATTTGTCCCTCTTCCTTTGAC
TTTTGACCATGATGGCCTGCTTATGCCCATGATAGCTTGCTAGGACTTTTGTTGCCTGTC
TTGACTTGTGTTGACCGCCTATGCAGATGCCATGTATGACTAGGTTGGACCCTAGCATAA
GCATTTTATTTTCCCACAACAAAAATGTTCTAGAATACCCCCACCTCCACCCCACCCCAA
AAAAAGGAAACAGAAACCACGCTATCCAACTATTTAATTATCTTGTCGAACAGTGACAGC
CATGTTTTCTAGAAGATAACATGGAACCCGTTTATCAAGGAGCTTTCAATCCCTTACTGG
AAGAATGAAAGGATTGCAATTTTTCCTCGATACAGAAGAGGTTTTGATTAAATAAGTTAC
CAAATATAGCTTGAGTACTATGTTCTATTTGTGCTTGCTCTATTGGTGGCTCGCTGCTAA
TACAATACACATTAAGCAGATGTTTCACATATGTACTTCCACCATGTACTGCTTAGAACA
TTGCTAAAATGTATAGATTTAGAATTGTTGTTTGCTTGAATATAACCAGTACAGCAAGCT
GTGTAGCAATTGATAAAGATAAATATAACCAGTATAACAAGGTATTCAGCAACTGAAATT
TATAAACTTACAGAAAGCAGCAAAACTAAAGATTGAGATTGAATAATACCTCAGAGATAA
ATGCACCAACATGGGAGTTATCCTTGAATGCAATCTTTGGTATACGAATGATCAAATGGC
GCGAAAACTTTTCTAAGCAAACAACAATAGTTGTCATGTGAGTACCATTAAGCAGAATAG
AAGTTCACCATGACAAGAGTTTAGTCTATAACAAAGAAAACTGAAAAATATATGGACATC
TTTGGTGTTAACACATTTGAATAATAATTAATAAGAGGCAACTTCAATCTTCTTTCACAT
TGTTCTACTTCTCGCAACTCCTTGCTTGTAGTATAACTTGTTTGTGGTCGAAAAGGCATT
AAGTGCATGAAAACAAACTAATGCTTTAACCATATCCACGCTGATTTTACTACAACGGTT
CTAGAACCGTGATTATAACTTGTGCTCGCCCTGTCCTAGACAAATTACTTAGTAATAGTA
CTGTCTTCTTCTTTCTTGTACTACCGATGCTAGATTTTCAAATTTCTCTGTGGAGAAGCC
CTGCACCTTGAGAGAAGAATCCAGGTGCATCACAACATGATTAGGGTGAGAGCCATGATG
CCTCAGTTCAGCATTACTAAGAAGTGGTAGCATACAATTTAGTTATATGATTTCGGGACA
TGCCTAGTGTACACATGTACTCAAATAATTGTGCAAGAATAATCCTCACATTAAGTTAAA
TGTTACAGAATCACATAGCCACCAGTCAACCAGAACATGCACAAGCTAATCGTATTCATC
GTAGGGTGATCCCACTGTTCTTATAGAAAGCAATTTTCCAGGGTTAAAACAGATGCAAAG
GGGAACAAACTGGGCCACCTTCATTAGATGAGTCTAATTCTATGATCCATTCTTCTTGTC
CTTCAATAGAATATTTGTCCTGCAGGGCACTGAATGTGACAGAAACCAATGTATCAACCA
TTTCATCTGCATCTCTCTTCTGGTTCAGTTTTGCATTAAACTCAAGGTCAAAGTAAATGT
GGCAAGGTGAACCCTGTAGCATCAGTAGAGATGTTATAGTCGATATCTAGGTTGTGACCA
TTTGTGGTAAAATTCGAGCATTAATGTATGTAAACAGATTCATCAAATCTAAACCATAAT
AGTATTATTTTTCTCTATGGGGAGTATTAATCCCCTGGCAAGACAGCTTGCAAATAATGC
ACAAAAACACTCAGATTGAGTAAAGTTAAGGCAAGCATAACCTGCTTTTATTTACCAAGT
TTATGAGTTAGGAATTATAAAAGCCAGAGATAATTACGTCCTTGCGGACTCTTCCCTCAC
ATCGTCCCCATCATAACAGGGAACTAGAACATGAAAATAAGGTGATATACAGAATTTTCT
GTGTAAGCTACCATGTAACATATAATTTATGACCATTTTTAGGACAAGGATATGGAGACT
TGCCTCCTGGATAACTTCATAGTGATGGCGGATCTGTGGGTCCATATTATTGTACCTGGA
AGAAGACGGTACAACGGAGCAGAATGGATTGGTATTATCGATAAGATTAGACCATTTAAG
GAAAACAAGACGAAAATTCAAATATGGCACTTATTCAGAGGGCCCAACTTGTTTCACCCT
CTAGTAACAGGAGGTTACAATGAAACAACCAAGCAGAATGAGATGGATAGATATAAACTA
TAAGGTATGTACGAAATGGAAATGTCAACAATGTAACAAGGTCTCAACCTTCTCCAGAAC
TCGTTATATGTAGACACAAGGAATCTTCTTTGCCCGCTCAAGTGATCTTGATAGCTGAAG
ACTTTGGTGCATGCATGTTCCTTTGAGAACCTTATTGCCTCATCTTGTCTAGGGAATGTA
GCCCAAACAACATCCCTAGATACCCACAAAAAGAACAACATTCAGAACAAAAGGAGTTCA
TTTGGCACACGCGAATGAAACATCGACTGAATTAGACACCTGGAGATCAAATCAGTTTGC
TTCTTGAGGTCAATGTGGATTTCACGAAGCAGCCTCAAGAGGCTCATCGGCTTTTTCACT
GGAACACCTTGCGGAGAACCGTAGAACACAACTGGAGACATCTGCTTTCGATTTCTGAAT
TTGATCGCCGCTGATGATGGCTCCCTATGCTAGAATGAACCAGGAACCGCATGAATTCAC
TTTCTCTTTCATGTTTCTTGTACTTAAACCACAAAATCGAACTTAAAAAAAGGTCACCTC
GCTCGCATTTTCGCCAACTTTCCGTGTCAAAGCAGAAGAGGAACTGCTTCCGCCGCCATC
ACCTTCTGCCGAAGGCGTGACCCGCAACTTCTTGCCCTGCCGACGCGGTCTCACCCTGAA
TGCCGACTCTGAATCCCAATCGAGCCGAGTCAACCAAATAAATCAAGATACATTGGTTGG
GGGGGGGGGGGCATTATTTTTTAGAAAAAGGAGCTTACGAGGAGGGGAGATGCCGCATTT
GAAGCAGGCGAAGAGGCGATCCACATCGTCCTTCGAAGATCCCATTTCGTTCGAGTCGAT
TCAAATTCCGTGTGACAATATTGTTGATCCCCTTGGTAACTAAGGTTTGTGGTTCTGGGG
TAGAAAAGTAGAAATGCTTGTGAGCAGGAAATTGATTTTCCGTTAGCGCGAAAGGGCTTC
TCGGGCGGCGGTTGAGGCCAACCACCGCTCACTTTTTTATTTTCCTTCTGGGCCAAACAA
AAGGAGAAGTAACTTCTTTTGCTTGCTGTCCATCTACAATGCAAAACTGAACACAAAAAA
AAACAAGACGCCATGATCAGGGTCTATACAGTACAGATAACTTGAAATAGTCACTCAAAT
ATATGCTCATTGTTCCACGCACACACAAAAAATTATCAATGTCCATACAAAGAGATATAC
ATGCCCACTGTCCATAGGCAATCAAATATATGATCTCGTATGCACAATCAAACCATACAA
ATGCACAACAAAAATCGGTTGCTATGTGCAGCAGGGTTAATACCTTTTGATTTTTGAGGG
AGAAATGGGCTGCCTCGCTTCCTCTATTCGTCGGCTCGGTGCTCTTCTTTGCTAACTGCA
GAGAAAGGGAGGGGTGCGTCAGATCTGGCACAAGGATGAGCAGCAACGAACACGGAACAT
ATACATATGTCGGATCTAGCAGAGAAACAAGGGGGGGGGGGGGGGGGAGGGGCCGTAGCA
GAGCCTCCGTACCCCTCCGTCGGCCCCTCCATTCCCCGACTCCGCAGCGCCCCGCCGCCG
GCGCTCACGTCCACAGCAGCCATCGGAACCAGAGTGGGGGGAGAGGGAGAGAGAGGGCTA
GAGAGAGCGAGAGAGGAGGAGGGAATGCACCTGCAGGCTGCAGCGCTGCCTCTTTTGCTC
AGCCGCGCCGCCGCTCCGATCAGGAACCGCAGCCGCCGCCGCTCCTTTCGCCTCCGTGGG
AGCGGTGAAAATGGAGGAGGTTTTGGCGGGCGCTAGGCGTCGTCCGGCCGACGCGAGTCC
AAAGATCAACCGCCTCGCGGGCCGTTGGATCAGCGGGTTGCATAGCCGTTCGATGAGCTC
AAGCTAGAACCCACATTACGGTTGCAACTATACATGGGCATATGTCGGGCCCGGGCCGGG
CCGAAAAAAGCCCGATGCTGAAAACCCAGGCCCGAGCCCAGCCCGGTCCGACCCTTGGGC
CTAATAAATTCGGCTCAATCCCAAAAAGCCCGACAGGACTCCATCGGCTCGCCCGACTAT
GCCTAAAATCACATTATTTATAAGCCCGAGCCTCGCGTGGCCCGGCCGTTGGACTCAATT
TTCAGGCGTGAGCCAAGCCCGTGATTTTTGGGCGGGGCCGTTGGGCTGCCCATGGTCATG
TCTAGTTGCAACTAGTGTCCTCCTTCAACTCACTACCCCTCCCTTCCCCGACTGCGAAAC
ATCTGCGTGTAAGAATCATAGACGGTTACCTTTCGCCCGTCGCCCGCAGCCATTACCACC
CCGACCGCAACATCCATATGCCCCGCCCCACTAAACCACTACCTAATACCCCTCCTCTCG
CCCCTCGATTCTAGCTCGTTAGCGCACCATATCGCACGTGACATGCTCTCCTTCGACATA
GCTTGGACTGTTGGAATTATGCCCTAGNNGCAATAATAAATGTATAGGTATTATTATAAT