morexGenes - Barley RNA-seq Database

Contig contig_57012
Source Contig contig_57012
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_57012 (8287 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_57012

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69825	1	1985 bp	MLOC_69825.1	Available	Available	LOC_Os08g02230.1, FRAME:+1, EVALUE:0.0, 13108.m00160 protein FAD-binding and arabino-lactone oxidase domains containing protein, putative, expressed
MLOC_69826	1	274 bp	MLOC_69826.1	Available	Available	None
CDS Structure of MLOC_69825

CDS Structure of MLOC_69826

Contig Sequence (8287 bp)

>contig_57012 8287 assembly3_WGSMorex_rbca.fasta
CCAGCCGCTAGCAGCATCACGCCGCCAACGGCGTCCAACTTGCGCCGCCAACGGCCTCCT
CACATGGAGTCTGTCGCACCGCCACCGCTTCGGATCGACAAGGCTCTGAATACCAAATGT
TGGCGCCGCCCTCGTTGCAGCGCCGCTTCGTGTTCCTCGCAACCTCTCCTCTCAAGGTTT
TCTCAAGAACATAACACACACACATGTAAGAAACTCTACACACACGCACACAACCAAGGA
GAAGACCAGCCATTGCTTTGCACGAGAGGCACACTTCTCCTTGGTAGAATAAGAGACTAC
ATTGTGTTTTTCCCAGCCCTCACGACCTGTTTTTCTCATTAACTCAAGCAATACTTATAC
ATAAAAGGCTAACCTCACGCACACAACTGAGCTGCCATGCACGGCAACTAACCCAACTAA
TCCATCTCCTGGAATCTCTCGAGACGCATGGGACTCGTCCAACATGCAATGCACACCAGT
TGAGTCATAAATCCACTCACGCATGCACTTAGACCTATTCTCTTGCTGCTACTAACTAAC
TCACCTAATCCCACTACTAACTTGTGTGTACACACATTAACTCATCTTCACGTGAGTACA
CACCCGCAGTCTAGTAGCTGGACACGACGGCATGCATGGCTCAACAAAAACAAATAACTA
AACCTAGTACTAATAACAAGATTAGTTCCAACACCTTCATTATGCAAATAAGAAAGGTTG
CACTCCCTCCATTTCATAATATAAGATGTTATTTACAACCAACGAATATTTGGTTGTTAT
TGTATGTCTCACGGGAAGGTTTCCACACGGCAGTACCCAACAAGTTAGTTGCTGCCGGGC
AGGCGAGCATACAACAGTTTGCAAATGGACTTGGAATTCACTTGAGATCAGACGATGCTG
TTTGCTACTGTTAACATTTTCAGCTCATATCCTTTTTGTTGTCATGAGTCCCACCCTGAG
TCACACACGCCTAGCAGGCCCAGAGGAATGGAGAGTAATAAACGCGGCGTTCTGGGTGAT
AAGGTGGCACATACGAAACACAGAATTGCTGCCACAAATAGTTCGATTACACATCATATC
AGATAGATGGTGAGAACAAGGGCCTTTGTATGCCTAAACTGTGACATATGAATCACGTGT
ACATTTGGTTTCTCTAATATACACATCACCATTGTTTCTAAGGAAGTTCTCCAAAGTTAT
TCTATGAAGTGCGTCGAAGACTAGGAAAAAACGTGTTTGTGAGGTCGTATGAAACATAGA
GACCAACACTGCAAGACCAGAATGAGTTTGGTGAGTCATATTAAAAGTGGTGATATCCAT
CAAGTCGGATTAACCGTTAACTCAGGTACAAATCAAGCCAAGGCGCGAACCATGTCAATC
ACCAAAACTAGAAGAGGTCAAACTGACCTTCAGAACGCCACCTTATTGGATAAGGACTAA
GGCTATAAGTTCTCATGTTAGTCATCCTTTTTTGCATGCGTGCTAGCCATCCTTTTTAAA
TTTAATTAGGTAGTATTTCCTCTATCCAAAATATTTGGTGTATAAAGTTTCTCAAATGTC
CAACATCTCTATGTTTGACCAAGTTTATATTCCCTCCGTTTCTAAATATAAGTCTTTTAA
GAGATTTCATTAAGTGACTACATACGAAACAAAATGAATGAATCTATACTTTAAAATATA
TCTATATACATTTGTATGTAGTTCTCTAGTGAAATCTCTAAAAAGACNNNTATTTAGGAA
CGGAAGGAGTAGAAAAGAATATAAACAATGAAGCTATGAATTGAATAAAATATGAAACTA
TAGTTCATGATGCATGTATTTTGAGACTATATTATGCATGTTGTAATCGGCATCTTTGTT
GATGCTTCGTTAGCGCCTTCGTATCTCGCAGCTTTCTTTTCTTTCTGATTTGTTGTAATG
TCAACTTTTAAGGGCTTCATTAATTTGAAGCCTGGCGACTGTCCCACAATTACGCTAACA
CATATTTGGTTACATGTTCCATTTCTTTAACGTCGAGGCCTTGACTTGCAACCACCCAAA
TAAGATAGCCAACCTACACGATAATGTTGTAGATGAAGTTTCTATACAATTACAAGCCTT
AAGCCCTTAAGAAAATCTTGCTCAGGTATTTTTGTGTCATATATGCAATTTCGATGTTGA
AATGTCATGGTTAATGACTCCATTCATTTAAAGTCGGGTTGATGTATTCTTTCTAAAAAA
GACTTTCAGCAAGATGGATGGAAAATCGTACAATTCTGCTAATATAGATTTGACTCGACA
TTTTTGTTTCTTTCATTTCTAAGCCTTGACTTGTAACCACCTAGAAAAGACACCCAATCT
AGAGGATGGCATTGTTCACGAAGCTTTGATGACACGGGTCCTTTAGCCGCCCTTAGGAAA
ACCCTGCCAATGAAACTTTGTGACATGCATGAAATATTGATATTGTAATATCAAACGTTA
AGTGGACCTTTTGTTTAAAGGCCAGATGTATGCCTTCTTTCTGACAAAAAAACTTTTACC
TAAATTGGTTGGAACCACACAATCACGCTAACACATAGTTGACTGGACCTTTTATTTTTT
GATTTCGAAGCATTGACCTGCAACCACCCATAAAAGATAGCCAACCTAGAGGGTAAGGTT
GTTGATGAAGTTCTTAGTGATACAAGCCCTTTGGCCTTTAGGAAAAATCGGGCTAATGAA
ATTATGTGACATACATGTAATTTTGATATTTTAATGTCAATTGTTAAGGGATTTCTTATT
TTAAAGCTCGGTAGATGCCTTCTTTCAAAAAAAAACTTTCAGTCAGATGGAAGAAAACCC
ACACATTTTTTTCTCCAAAAGGAGGATTACCCAAGCCTTGAGCAATGCAAACAACCATCT
TCATCACATTATTCAACAAGGCCCTATAAAAGGAATGCATACATCAAACGAAAACCACCT
TTTTGAAGAAAACTTTGGTCCTAGTTACAAGATTTATGATGTGCCCTAACCCGCGCATAG
GATTTTTTTTCTTCGACTTCGAGAGGCCTTGACTTGCAACCACCCAGAAAAGACAATATA
GCATTGGTGGCGAAGTTTTTGGCGATACAAGCCCTTTAGCCCTTAGAAAAATCCTGGTGA
TGGAATCTTGTGGGATACGTGTAATTTTCATGTTGTAATGTCAACTGTTAAGGGCTCAGT
AATCTAGAGCCGGATGGCTGCCTCTTTTATATATATTTTTCCGGATAGATAGGTGGGAAC
CACACAATCACGCTAACACATATCCGATTAGACCTTTTTTTTTATTTTGAAGCATTGTCT
TGCAACTACCCATAAAAGATAGCCAACTTAGATGATAAAGTTGTTTATGAAGTTCTTAGT
GATACAAGCCCTTTAGCCTTGAGGAAAATCCGGCTAACGAACAAAAGTATGTGACACACA
TGTAGTTTTGATATTGTAATGACAACTGTTCAGGGATCTGTTTATTTAAAGTTGGCTAGA
TGCCTTCTTTCTAAAAAACAAACTTTTAGCCAGATGGATGAAAAAACACACAATTATGCC
ATCATAGAGTTTTTTTGTTTCTTTGACTTTGAGGCCTTGACTTGTAACCACCGAGATAAG
ACAGGATAACATTTGGTGACAAGGTTTTTGGCGATACAAGCCCTTTAGCCCTCAGGAAAA
TCCTGGTGATGGAATTTTGGGGCATACATGTAAATTTAATGTTGTAGTGTCAACTGTTAA
GGGCTCCTGTAATCTGAAGCCGGATGTATGCCTTCTTTATATTGTTATAGTTTCTTTTAT
AATCATGGTCAAACATTTAAATGGTGACTTACACGAAAAATAATACATCTTGTATTCAGG
AACGGAGGAAGTATATATTTTCCCAGCTAGATGAATGAAAAACCACACAATTACGCTAAC
ACAGAGTTGACTAAAACGTCTTGTTCCTTTTAAGTTCGAAGCCTTGACCTGCAACCACCC
AGAAAAAGACAGCTAACCTTTTTTTTTTTTTTGCAATAAAGACAGCTAACCTTGTTGACC
ATGTTTTTTAGCGACACAAGCCCTTTAGCTCGGATGCATATATGTACTGTAGTAAATTAC
TAAGATGGTACTTCTTGCGTTCATTCGTTACTCTGCGCACAACTAGCTTCACTTAATTAT
ATTGAAGTCGTACTCGTTTAAAAACCCACAAGGTTTAGAGCATATACAACCGGACATCTG
AAATAATCCCTCATGTTTACGGATGCATTCGAACAATGACCGCACAGGAGGAAGAAGGAA
AAAAAAGATCCAACCGGACGTGGCCATCCCTATACACAGTAGCGGACCTACCATCACACA
ATGTCTTAGGCAACTTGCATCTATAGTATGCTACAGTGATGTATAGTGTACTTTATTCTA
CAGTGAACGAAGGATTTCCCTAGCACGCCTCAAGCGAAGGTCCTACCTACATGGGGTCTG
AAACCGCCACTGCCTATACGTCCGAGCTGCCCGCGAACCCTCATATACATCTCAAATATA
GGAAGGATATGAAGGCTTGCAGACGCGTCCGAGCGCGCCCGGTCAGTCCTCTACGTAGGA
CGTGACCCCACCCCGGACCATCTTTTTCTTTTTCTTTATTCAATTTTTTTCTTTCTTTCT
CTTCCTCTTCATCAATCACGTACAAGTGACCAGACATTCGAGAAAGAAAACGAGAAATAT
AACTGCCCAAATGAACATATAAAGGACAGACTCGGTCACTGACCGGGGCATCCATGTATG
TTTAGGGAATCATATTTGCTATGTGCGGCTGGAGATGCTCTTATATAAGGGAAAGACGCT
CGATTGGCCAAGTTAAACTCTATAGTGACTAGGATCGAAGTTAGATTACCCACAATGAGA
ATAACATAGGTAGTAACATAGATGTCACCTAACTAAGAAATGATGTGGAAACTAATTAAT
GAGAAAAGGGAGAAATTGAGTAACTTAGGTAGTTACTAATACTAAGAGTAACATAAGAAC
AAGTACAATAAGGTACAGTCAGCNNNNNNTAAGAATTAAAATACTATATTTTTGCTGAGT
TGACTGAGAGAAAAGAGGAGAAAGAAAGAAGCGGACTCTTCGTGAAGAGCCAGCTCTAGC
ACNNNNNNNNNNNNNNNNNNTGAGAATGAAAGGTGGGTCATATATGATAAAAGTAGTACT
CTTTTATAACTAACTATTGTATAAGGTAGCTATAAGATAGACTATAAGATAGACTATAAG
ATATATGACCCACCTTTAATTCTCACAAAGCACATAGGAGCACGTGCTAGAGGTGGCTCT
TCACGAAGAGTCTGTTTCTCATCTCTCTCCTCTTCTCTCTCATTCAACTCAACAAATATA
TATTATTCTATTTTTTACAGCCTTGTTCCTTAATGTAATTGCTCAAGTTTATGCATGCAT
GCACCATGCCGCGAGACCTTGACCTAGCTTGTCTCTATTTAAGGCCTAGCTTGCCTCTAT
TGGCCACAACCCCAGGCTGTAGTACAGGCATCCAGTCAAGAGAAAAATCGATGTCACGAG
GCCAAAAAACAGCAATGGAAAGCCTGCTGGTGGTTCTCTCACTAGGAGTCCTCCTGCAGC
TCGCCGGCTGCAGCCCTCCGCCTGACCCGGTGATGTGCACGCATGGCACGTCCAACTGCA
CGATCACCAACACGTACGGCTCCTTCACGGACCGCACCATCTGCCGCGCGGCCAAGGTCA
CCTACCCGCGGACCGAGCAGGAGCTCGTCGCGGCCGTGGCAGCCGTGGCGTCCACAAAAC
AGAAGGTGAGGGTGGCCACCAAGCACTCCCACAGCATTCCCAAGCTGGCGTGCCCCGGCG
GCGACGACGGCACCATCATAAGCACGGCGCGGCTCAACCGTACGGTGTGCATCGACGCCG
CGAAGCGGCTCATGACGGTGGAGAGCGGCATGCTCCTCCGGGACCTGGTCGAAGCCGCCG
CCGCTGCGGGGCTGTCCCTGCCGCACTCGCCGTACTGGCACGGCCTGACCATCGGGGGGC
TCTTGAGCACGGGGGCGCACGGGAGCTCGCTGTGGGGAAAGGGAGGCGGCGCGCACGAGT
ACGTGGTCGGGCTGAGGATCGTGACTCCGGCGCCGGCCAGCCAGGGGTTCGCCGTAGTGA
GGGAGCTCGGGGCAGACCACCCGGACCTTGACGCCGCGAAGGTCTCCCTTGGGGTTCTCG
GCGTCATCTCTCATGTCACTCTGACCATGCAGCCGTTGTTCAAGCGGTCGGTGACGCTCG
TGAAGCGCGACGACTCCGACTTCCAAGAGCAGGTGGTCCGGTGGGGGCATCTTCATGAGT
ACGGCGACATGACGTGGCTGCCGCACCAGGGCAAGGTGATCTACCGCCAGGACGACCGCG
TCGACGTCTCGACCCCGGGCAATGGCCTCTACGACTTGCCCCTTTTTCGCATCAGCCCCA
CCCGCGAACTCATCGATGCAAGAGCCGCCGAAGAGCGGCTGCAGGAGAATGGCACTGACA
CCGCCCGGTGCGAGGCGGCGCAGCAGCAGCAGGCTGCGACGGAGCGGCTGAATGTATTCA
CCAACGACGGCGTCTCCTTCACGGGATACCCGGTGGTGGGGTACCAGCACCGCATCCAGG
CGTCCGGCACGTGCCTCAATAGCCCAGAGGATGGCCTCCTCACTTCCTGCGCCTGGGACC
CGCGCATCCGAGGCTCCTTCTTCGACAACTCCGGCTTCAGCATCCCGCTGTCCAGGGCAC
CGGCATTCGTCGCCGACATGAAACGTCTCCGGGACCTCAAGCCGGACCTGTTTTGTTCTG
CTGTCGACGCCAGGATAGGTGTGCTCCTACGATACTTGAAGGCGTCGTCCGCTTATCTTG
GCAAGCCGGAGGACTCGATCGGCGTCGACATCATCTACTACCGGAGCCACACCGAAGGCA
TGCCGCGTGCGCACGCCGACGTGGTGGACGAGATTGAGCAGATGGCGTTGCGCAAGTATG
GGGGCGTCCCACACTGGGGCAAGAGCCGCAATTTCGCCTTCGATGGTGCCATCGCAAAGT
ACCCAAAAGTCCATGAGTTTCTTAGGGTGAAACATAGGTACGACCCCGAGGGGCTCTTCT
CCAACGAGTGGACTGACCAGGTTCTCGGTATCAATGGGAGTCCCAGCATCATTAAAAAGC
GTTGCGCCATTGAAGGACTTTGCGTCTGCTCCAACAACTCGCACTGTGCTCCGGAGCAAG
GCTACTTCTGCAGGCCAGGGAAGGTGTATAAGGAGGCTCGAGTCTGCTCGTTCTTCAAGG
ATTATTAAGGATGTAAAATTTGGTAGAGCCGTGCATTGCACTACGCTCCTTTCCGGTTGC
TTGTCCGACCTGAAAATATTGATTTACTTTTCCTTAGCATGTACGAGGATAAGTGAATTA
CGTAAAATATGTTGAACCATCTTGCCGTTGCCACTATGGCCAACTATCAATCTATTCAAT
AATGATGTTTTAGTTCATCGAAAGATTTCCAATAGAGAATGGAATTGCATGGGGGAACGC
TTTGAGAAAAAGCTAAGCTGCTCTAAGAGTAAGCTATTGTCATACAGAGGACGATTAATT
CTGATTAACTCGGTTCTTACAAGTATGCCAATGTTCCTCTTGTCCTTTTTTAAGGTACCG
GTAGGGGTACGCAAAAGGTTGGTTTTCTATCGATCCCGTTTCTTTTGACAGAGTGATGAA
GATAGAAAGAAATACATACTAGCTAAATGGGACATTATTAGTTGGTCCAAGGACCAAGGA
GGTCTGGGGATTGAGAATTTAGAGGTAAAAAACAAATGTCTGCTCAGTAAATGGTTGTCC
AGGCTATCTGTAGAGACAGAAGGGATGTGGGTACAAGTGTTGCGTAATAAGTACCTTCAA
TCTAAGAGCCTAACCCAGGTCAACGTTAGACACAATGATTCATCATTCTAAAAAGGGTTG
ATGAAAGTGAGAGATGCCTTTTTTCCATAGAACTAAATTCATTATTGGAAATGTTGAGGG
AACGAGATTCTGGGAGGATATGTGGTTGGGGAAGACGCCTTTAGCCACCCAATATCCAGC
GGTGTATAATATTGTGCAACGTAAGGAAGTATACATCGCCACAATTTTACAGTCAAATCC
TCTAAATATTCAATTTAGACCAGCGTTGATAGTGCTGGAATTTTTATCTATTTTGGGCCA
GCCAATATATAATTTCAGAAATTCCTAATAAATCTCAGAGGCCCAGGGAGCCCGTTTGTG
CAAGGCAAGAGGTGGAAATGTTTAGTCCCGCATTGATAGTTTAGTGGGAGTTGGACCTCC
TTATAAG