Contig Data
morexGenes
Links



Map Locations of contig_56994 (6051 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_56994

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69815 2 1303 bp MLOC_69815.1 Available Available LOC_Os04g42520.1, FRAME:-2, EVALUE:1e-111, 13104.m04200 protein phosphoribosyl transferase, putative, expressed
MLOC_69814 2 785 bp MLOC_69814.2 Available Available LOC_Os04g42530.1, FRAME:+1, EVALUE:4e-13, 13104.m04202 protein conserved hypothetical protein





CDS Structure of MLOC_69815






CDS Structure of MLOC_69814






Contig Sequence (6051 bp)

>contig_56994 6051 assembly3_WGSMorex_rbca.fasta
ATGTATGCGNTACGAAGTTATTACGGGGGTGGCGGCGCCGGCGGCTGCGGCGGGACGGCT
CGTTCCTCGACCTCCACGAGACGGGCAGGGCGAAGAAGCTGGATTTGTCGCCGCCGCTGC
CATCGCCCGCCCCCACCAAGGTAGTTCCCTGCACATGAACCCCTCCGAGCTTGAGCTCGC
TCTCCGAATCTTCCATTGGGTTACGAGGTTTCTGTTGGCTTGGGTTGTTCAGGAGGGGTG
GAGGAGGGTGCTCACAGCGGCCATCAGGAAGTTCAAGGCGCGGCACCGCCGGTCCCGGCC
GGCTCCCCTGCTCCAGACGATGCTTCCAATGCTCTGAATCCACCCATCGATTGATCGATC
GCGCCCGCAACTTCCTTGTTCTTATGTTTGATTATTGATGAGTTCGAGCGTGTTTGTAAG
TTGCCTGTCATGTGTAGTAGTAAACTATCGCCAGTTTCTCTATTCAGTGTGCGTCCTATT
TTTCCGTCAGTTAGTTTCAGTTTGCAACCGATCATCAGGTTTCTGATGGAATCGTAACGA
ACCTGAATCCGAGTCGAAATCCACCCTGCAATTCCGTTACAAATAGCCCGCGGGAATCGC
AACTAAAACAAACAAAACGCGCCGGATCACCCGACAGTTTCAACTTTCAACCGGGGCTCT
GAAGATGGCTTCCAAGATCGCCGCCACGGCGGCCAAGGTGCCAGCCAAGGCGAAGGGGCA
CTGCATCTGCTCGCCAACCGAGCACCCTGGCTCCTTCCGGTGCAGGCTCCACCGCGCCGG
CGGTATGCCCAGGTCGGTCTCGTGCCAGCAGTTCGCTGACCCCCACACGGCGAGCTCCCC
GCTGCTCTCCTCGGGCCACATGCCGAGGTCGACATCGCAGCAGCAGTTCGCGCGTCCTTC
CGGCTCCGGCATTCTGAGATCGGCGTCCCAGCAGCAGCTCCCGTGCTCCGCCGGTGTGCC
AAGATCGGTATCGTGGCAAGATTTTGCTCAGGAAAACTGATCAAACCTCCTGAACCAACC
AGGCTGTTCTATTTTCATAGCTTAAGTTCAGAAACTACCGATGTAACTTTCTTGTTCAGA
AACTACCGATGCTTCAATTTTAGAGACAATGGAATAAATTAATGCTTAGATGCACACACA
AAAATCTCATAAAAGAACCTGAACAACAGGATGGTTCTTTTCTTTGCGGCTAACAGCGGT
GATTCCCGACAGAAATAACTACAAAGCTCTCATCAAATACTCTACTACTGGAAAAACTAG
TGCTAGGAAGACTACATCTCATCTATCTCACACTCTCCATCAAGACACTTAGCAATAGCA
GCTGCCCCTAACAGTGTACTGCAGACTTATCAATGCACATCCACCGTGCGCGCCCTTGCA
AATGAATGAAGCTGTCATCCTTTCTCTGACGAAGAAACAAGGCCAGAATTAGTTCAGGCC
TCGCTGTGTTGCAAAATATGTTGGAAAAACATTAACAAAAACTACTGACAGATATTTCAA
CAATCAGACTATAAACACTTGCCTGATCAATCATCATCATTTCATTTTTTATTTGCGGGA
CTCCACCAGTATGTAAACTGGCTTTCCATCGAGCTTGTAGAAATCCTGCAGAATACACAA
AGTTACTCCCTCCATTCCAAAATAAATATCATGGTATTAAATACATTTGCCACTCTTAGA
AATATGTATTTTCCATGTGTTAAATATTTGATTGATGTCTATATTCTTGATGCGATGATA
AAATCAACGAAAAGCTTCCATTGTCGGGGGAAAATGTATGCATGTAGTGTTTCTATTTGT
GGTATATTTTCCAAACTCAAGCTTCCATTTTTTCTCACAATCCCTGATATGTTCAATTTA
CAGCAAGTATGTTCATAGAGGAGAACATATAAGCCTAGGTTGATGTGTTCCTGTAAGTAA
AATAGGGAAGTCCTAGTAGGGTTTGCAAATTAGGATTCTTCTAGATAAGTTGGTCACAGG
TAAGTTTAGTAACCTGTCAGCTCAGTGCTTATTTTGTTCATTGCTTTCTCAATTCATCTG
TCCAAGTCGCATAGTAGTGCAATACTTGTAGTAGTAAATTTGTTAGCTAGGGTTGTTTCA
CCTTAGCCCTTGCGTACCTTAAACTTGGGGAGTCCAATGAGGCATGCACACTCAACAACA
TCAGCTGCGGCACGTTCTGGAATGCAAATAATTGCACCAATCATGAAAAGATTAGTCAAA
AGACATTTTCATGTTGTTAGCTCATGATATATTCATATGATTGAGCGAGACATGTAATTA
GAACTCCTCGTTTTCTCTGTGACGTGAATGCTCGATACTTATCTACTCCCTCCGTCCCGG
TCTATAAGTCATTAGCGTAGTTCTAGGTCACCGATTTAAGGAATTAAATATGTGTTATAT
GTCATGAAAAGTATATCACTAGATTTTTACACGGATGTAGTTTCTAAATATATATTTTTT
ATTACATATGATACATATTTAGATAGTTAAATTATCGACCTAGAACTAAGCAAATGACTT
ATACACCGGGACGGGGGTAGTACAAAGTTTCCTCTTGGTAGCATGAAAAAGAAGGAAATT
ATTAGTCCAGTCGCATCAAAGCCACACCTTTATGTAATTAGCTAGTAGCTACCCCCGTAT
ATAGGGCTTATCTTTCAAACAGGAATTTGTCACACTCACGGGCAAACTTTGCTTCTTGTC
AATAAAACATGATGGTCCTCTACTCTACTACATGTTGTCACTTATCACTAAGATGTTGAG
ATGCTTAAGTGGCTACACTGCATGATACTCGATGCGTCTTTTTTGGCAAGACTATCAGAG
ATTATTCCATATCAGCATCACACATCCTTTGACTTACTTATCCCCGTTATATTTATTTAC
TGGACTACTAGAGTGCTGGTGTAGCAGAAGCTCCATGCAAGAATTATTCACATTCCATCT
GCATGTGCACCAATCTTAGAGAGAAGAAGAGGGAGAGACTCACCAAGAAGTTTTATAGCT
GCAGAAAGTGTTCCACCGGTTGCAACCAGATCATCAACCACCACCACACGCTCGCCAGGT
TCGACGGCGCCAACATGCATCTCCAAGCAATCCGTCCCGTACTCAAGCGTATAAGTCTCG
GAAATCACCTCGCCTTCGTTATTTTGTAGAGCGAAATTAGCACATTTTGTAAACCACTAA
CGACTGTTTTCTTTTTTTTTTCTTTTGGAGAAAATACAGTAAACTGCAGCTCAGTCTACT
CAGAGGATGTAGAGAAAATTCAGGAAAAATGACATGTTCAGGATGTAGGTAGGTGGTTAA
TGTGCTCGAGGATTCAGTATGCATCAGTACTGTAGTCGCAGTAGAGCACTTGATTCTAAG
CACATGTCGGATCATCCCCGTCACAGCTGAGAAGATGGGGATGATGTGGAAGTGCAGGGT
GGAGATTACAGTGTTACCTGGGAGCTTCCCGGGTTTGCGCAGCGGTATGAATTTGGCTCC
GATGGCCAGCGCAATCGCCGGGCCAAATATGAACCCTCTCGCCTCAATGCCTAGTAGCAG
CAGCACAAGATGTCAGCCATATAATATAACACGAATAGGTCAGTCAGAGAGGCACGAAGG
TCATCATTCATTCAGCGTATACGTAAGTAGATAGCATGGCTAGGGTACGTGTACGCAACA
ACGTCACGGCGGCATTAGGTGCTGACATAAGCCAGGCGCGCCGGGCGAGCGAGCAAACAG
CGGCGTTAACCTAACCAGATCGCTGTGCTCTTGTAGTACTAGCAGAGCCCAGAGGTATAG
TAGGTACGCGAGGAGAGGACCAGACGGGACGACACCGCATGTGCGCGATCGACCGCGGCC
GTCCGATCAGGTGATCACGCCGGTCCCCGGCGTGACCTCGTCTCCCCCCAATCGCCCGCC
GTCTACATGCACGCCCCCTGTGACCCGGGCATTGAGCACGTACAAGTGGCGCGACGGGGG
CCGGCCGGCGCGCGCTGGCGTTCGTTCGTCCGTTCGATCGGCTTCAGGGACCATGCGACG
ACAGCGCAAGGACACCTCCCACATGCGCCTGCAAATTGGCTTCGGTTCCATCCATGGACG
ACTCTTCTTCCTCCTCTTCCTTCCTCCCACCGGTGGCGGCATTGGCCCCTGGGTTTAATT
GCTCTGCTCTCTGGAACCTGGACCAGACCAGGCGGTGAACTGATGAGGAAGACGCATACG
TGTGTGCGTACCAATACTGTTGCTACTACCTAGTACTGCGCCTACTGTTCTCTAGTGCTA
GTACTCCACGGTTCTGTTCGTATCTGATGAAAAAAATAAGAGTTGCTACGTACTTCCTCC
GTAAAACTAGTAAATATACGATCTTTTAGATCACTACAGATGGAGGGAGGGGGTACAAGT
TTAGCCGTACTGGTAATTTGTAATGTGGTGCGGTGGTGGTGACCTGATCAACGACAGAGC
GCGGGGGAGACAAAGGGAGCAGGAATTATCTGCCCCCAAAGAAGGGAAGCAAGTAGTAGT
AGGAGCAGTAGCAGGCCGGTATGTTTCAGAACAGCCCCAGCGGCATTAAAGAAAGACGCA
CGGGCCGGCACCAGAGCGCGCGCGCGTGCGTGGACGGCACATGGCTCCTGCGCTGCATGA
CTGACTGATTGACCAGCGGGCGCGGGCGCGGGCCGATGGGTCGGATAAGGATGGTTTCTC
ACCTGCGACGGCCGCGATGCCCATGCCGCGGTAGCGCTCCACGAACATGTCGACGGCGTC
CTTGAACACGCCCGGCCGCAGCAGCAGCGCCGTGATGTCGTTGAACATGATCTCTGCATG
CCGCGCCGCGCACCAGCGTCAGGCAACTAGTGCTGCTCCTGGTTAGCTGAAAACGGTTTC
AAGCGGAGACCGACGGACGGACGGACCTGGCTTGGGGAAGTGCGGGACGACGCGGATGGC
GTCGGAAATGCCCTGGAGGCGCGGGTCGGCGTGGCCGCTGCCGCTCTTCTTGGCCGGCGC
CCGCGCCTCCACCATGCTGCTGCCGCTGGTGTCCTGCTCCCCCATGCCCGTGATCTCGCT
CGCTCGCTCGCTCGTTGGTTGGTTGGTTGCTTTGCTTGGTCGTTTGATCTTCCTTCCTCG
GCTATCGCTTGCAGTAGTGGTGGCTAGGCTACCAGGGAGAAAGGTGTGCGTGTGCGTGTA
TAAATAAACACGAGGAGAGGAGAGGAGACGGAGGGAGGCGCCGGGTGGACGTAGCCCGGA
GGCAGAGCGAGAGAGTAGGGGGGTAGTTTTTATTATCCTTGGAAACCGGCCGGTAGCCAG
GACCACCTGCGCTGTGTTTGCATAGAGAAGGAGGGCTCGCCTCGCTCACTGGACAGTGGC
CAACCTCCCCCGATTCGTGAATGGTCACCGGTGCGTGACTCGGTGCGGGTTTGGCCGTTC
CGGCCACGGGAGATCGCTCGCTCTCCCTGCAAGTTTTCAGGGCCTCTTTTTGATTCCTAG
GGTTTCGAAAACGCAGGAAGAGAAGAAAAAAATAGGATTGAAGTGACATGATCATTTGAA
TCCTGTAAGATTATCAATTGCTCTCTACGATGGTTTTAATAATTGATTACAAAATATGCA
TAATTGGACTAATATGTTTATCCAACCATATTTCAGAAAAAATCAAAATATGCTTTGGTT
AAAGACTAATGTGGAGATTCCCCTTGATGCAAGAAATGAACAGAATTGGCTCAAGCTTCA
AGACGGAAGACTCTTCATTTTATATTTGTAAGAAATCATTTTTGAGTTCATAAAAAAGTC
AATACTATTAAAAGGGATTGAGGTATTAAAATAAACTAGTTGTTCAAGTGATCAAAGTTA
GCCACCAAAATACTCAATCATTTTTTCCACATAATTATTCTGTCCAAAACCACATACTCA
AAATCGGTGCCATCAAGTTTCCCATTTCGACACAACCGAGTTTCATCCCACACACAACCC
TAGTCATTCTCATCAAATCGGTGCAACTGAAACCATATTGGTGCTACCGAGTTTGGGTGA
CCAACATTCCGGTGCCTCGATACACAAAATCGGAATTTCAGAGTTTGAGTA