morexGenes - Barley RNA-seq Database

Contig contig_56991
Source Contig contig_56991
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56991 (6968 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_56991

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69812	2	1795 bp	AK375914	Available	Available	None
MLOC_69811	2	673 bp	None	Available	Available	LOC_Os12g43830.1, FRAME:+2, EVALUE:6e-38, 13112.m04622 protein NUC189 domain containing protein, expressed
CDS Structure of MLOC_69812

CDS Structure of MLOC_69811

Contig Sequence (6968 bp)

>contig_56991 6968 assembly3_WGSMorex_rbca.fasta
CCTGGTACGCTCACCCGCGGTGCGCCCGGCGCGCGGCCGCCCCCCGCGCTGCCGCGCGCC
CGGCCCCCCCCCCCCCCCGCCGCGGCGGGTGTCGCCGCCGTGGTGCCCCCCAGCGCGGAC
TCCGTCCACGTCCTGCTCAGGCAGGCCCTGCAGGCCGACGACCGCGCCGCGCTGCTGGGC
TGCCTCTACAACCGAGACGGCAAGGTATCTGCCTCTGATTTCTCGTCTGCGGCCGCATGG
ACATGGTGCAAGATTGTATCTTGATAGCTGGTAGCTTCATCGTCAGTGCAGCGTGGGTTA
CGGTTCTGTTCATGGGATTTAAGCCTCGAGTTCGTCGCGCAGATTAGGAAGGGATGTTTG
GCTTGGTCCAGAGTTCAGGGGGACGGCTGGTTTGAGCTCCTGCACAATTGAATTTGAGCC
GTGTGTGTGTGTGTGTTGGAATGTTTGGTTGGTTGGGTTGTGCATTGCACATGTGCGATG
AATTCCATGAGCGTGGGCACGGGTTCGTCGCACAAATTTGGGAGGGATGGCTGTGGACCT
TCCTCCCATGGCCAATCGCTCTTGGGCATGGTCACACATTGATAACGACAATTAGGTTGA
GTTTCAGCTCGATGGATTGTGAAGCTCTGAATATCAGTTTTTCTTTATGCAATTAGGTCA
ACAAATCTGATGCGTACTCCCTCTGTACGCTCTTATATTAGTTTACGGAGGGAGTGGTTC
CTAATTCAGTGTATTGTTCTACATGCAGGTTATCGTGAAGTCGGTATCACTTCTGACCCC
AGCAGACGCTGTGAAGTTCCTCAAATCCATGGTATCGCTCATGCAGTCTAGGTATGATAA
TGTTTCCGAGCTACTCTGCCAATTTTAGTACCAAAACGGCTGCGATATGTTATGTGGCAC
ACATCGGTTGACATGAATGCCGAAGGCTTCAATTCAGTTGATTTTCCCCTTTTGCATGTT
TAACTGGGTTGTCATGGGCTACTGAAAGTCTTAAAGCATTTTCTTTTACTTGTATGCCCT
CATATTTCTGACATACATGTGTTCCATGACTGGTTTGCTTTTCGTTTTCGCCTCGGCAGG
GGTTCAGTACTGGTTTGCTTGCTCCCATGGCTACAAGCTCTGCTCGGCCGACACATGAGC
AGCATAGTGTCTCAGGAGTCCTCTCTGCTGCTGCTCAACTCGCTCTATCAGGTGAGTATT
TTGTTTCAAATTTCAGCCGCAGGGCTGTACTGCTACGAAGTACAAATAATAACAGTTCTT
ATTTCTGGACTGTAACGTTACCTGGCGCATTCCTTTTATCAGCTGATTGACGCACGAACA
TCGACCTTCGCGTCGTTGCTCAAGCTGTCTACCTGCCTAGATTATCATTTCAGCGAGGTA
AGTTTCCTCCTGCCCGAGAAGACAATATTCTTGCATTGCAACCTCGTGTGTGCATGCGTG
TGTAATCCAAGCATGTGTATTCCAGATCTGCGATGACGGATCCGATGAAGAAGAGGGAGG
CCCTCCGCTTATCTACGAGGACATGGATTCCGACGAGGAAGATTCTGAAGTTGATGATGC
TATGGAAACCGAGGACAAGGGGACTGACAAGGAAGAGTCTGAAGTCGATGATGAGTGAGA
GAGATCACAGCATTTGAACTCTGGTTGCTAGTAACTGTACTGTAACTCTGGTTGCTTGTA
ACTGTTTGAGACACGCTGCGTCATAGACAAGAAGTTTTGATCATGGTGAAAATTCCTCAA
ATTTTTGTTGCTAATCATATTTGTTTTTGTGATAACAAATTCATCATCAGTAAGCTTAGA
TGTCACACACCAAACACAAAAATAAAATTGATGAATTTGGGAGAAGCGTTTTGGCTCCTG
GAAGCATTTGCCCTGGATGAACAATAGCTCAAAAAAAAGTAGTAAAATATTTTCTTATTT
TTTTTGGATTTTTTTGTCGATGTTTGTGTTAGTGTCGCAAGCATGGTTGACAATTTTCAT
GCAAAATGGATCAATAGTATTTTGTCGGTTAAAAAAATAGGGATGACAATTTGGGTTAGC
ATTTGGAGTTTAAATTATTATTATTTTGGACAGACCAATATCTTTTAACCTTTTTGCATA
AAACTTTGAATGTGGCATTTGGATTTGCCTATGGATACATAAAAAAAAATATTGGTATAT
TTTGATATTTCAAAAATTATTTTCCACCTGGAGCACATGTTCCCACAAGCCAAATTGGAT
TTCCGGAATTGGTACCATAGACAAATTGGGTAACAGAATAGGTATACCCAGATCACACAT
TCATTCATAAAACTATTTGTAGAGTTGAACATTCATGAGGTACAAATTCCATCACGCATG
CTACCAAAATATGTAAACGATATGGCGAAAACAGCCGGTCGAATTCTAACTAGATTAAAA
AAGAACAAGTATTTCACGAAGAACCAAGTAAAAATTGAAAGAACTCTTGTTTCCTGAAGC
ACAACAAGAGCACACATCTTCAGCAATATACAGGACACAAACTCAGCCTCCTCTCCACAC
GTATATTTTCACGAACGAATGTTCTCCATCAGTACCACTTTCCAGAATCCAGAACGGTCG
ATTTTTCATACATAAACCACTAGATCCTTAGTTTCGGGCCAAAAAATCGGAAGAAACATA
CTCCTTTCCACGTGGATGAAACTCATGTTTGTGGCGGCATGTTTGCGTAGAGGAATGTGT
AGAAGAGTCCCACCTCAGGCATGCTTCGGATGGTCTGGATGTGCTTGTTCTTGCTTGGTT
CCTCGAGCAGCGTTGAGCTCAGTTGGGCTACCCTAGCTAAGAGCTTCGCCAAGGGCAGTC
CTGACGGAGGAAGCGCGGTTCCAACCTGCGCACCCAAGTCCTCTGTCACCAAATCAGCTA
CCTTTCTCAACGACATGTCCATGATATTTCTGAAATCGTCGCTGTAAACACAAGGTTCCG
TTAAGATGATGTGAGATACTGATGGAGTTTCTTTTGAAGAAAAATAGAACTGGCAAAAGA
GTTAGACATTAGATAGCATTGCCAATGATAAGCATGGACAATTAAATATCACCTACATTA
AGCAAGTACCACAACTCCACTATAACAGTCAAACATGTTTGTTTTCTCATTTTGCAATAG
AGCTAACGGCCTACAAAACGTGTCTACAACAGTTTATGCTATAAGAAAAAAGAGGCCATT
CAATACAAAACCAGATACTAGCATATACCAAATTTTATACCAGACAGTTATGCATTATCA
CTGCCGGTTATCAATTCAAATTATCCCCTCTGTTTTCCTTTGGTTCTCAAACAACATATT
TAAATGGGTAATAGCCAAACAAGTAAAAACAATAGTTAAAAACAACATAGCAGTCCCAGA
GCTACAATACTGCCAGAACCCAGCAATACAGAATGGTACAGCTGGCAACCAGCTGTTTTT
TGTTGTCTCTGCTCCAGATATGAACATGATATAAATCAATCCCAGATCATAATTCATAAA
ATAGAGTACTGTTATTGCTCCAGTGGTAACCTCTTCATAAGAACAATGCATAATGTATGA
GTATGTTACTAACAAAGAAAATTTACTGCAGCACCACCTTGCATTAACATTTTCCTTGTT
TTCATGTCATCAATATTTAAAAGCTCAAACAAACACACTAGTTGCTTATGTATGAAACGA
CATCTGGTATATGGATTACAGTGTGTTGACTTAACATCTTGAAAAGATAATTATTGAAAG
AAGATGTAACGATGGGCAGCCATATGAAAGATATGAGACAACAGACGCATCGTGGAGCAA
ATCACAGTATTACAAAACCCTGCGTATATTGTGAATTTAAATACATATTTTGCATTACCT
TGCCAACACTATGCGTGTCTCGGTCATTAGCTGATCAAGCTTTCCAGCATCCATCAGAAG
AGATGAGTCATCAAAGCCGCTGCTGGACACAGCCATTAACTGTGCATACCGATTAGCATT
TTCAGGTACAAGGAAATTTATCCATGAGTTGCCTTCACACAGACTCATGAACTGCTCCGA
TATCTTCAACATCGTTTGTAAAACTTGCTCCATGCTCATAGGGTCTTTGAGTTGCTTCCT
GCACATTTTTTCCATGATAGTAATAGTATCACTACGGGAAACACACATGTTTTAAAGTAC
GAGGTGATTTAAGCTAAATGAGACAGCATACTCTTGGCGAAACGTAACTCTGTGCTATAA
TAAAATAATTTCGTCATGTAAAGGTGCAACAATAATCTAAAGGGCCCCTACTCTAAATGA
TAAAATAAGTATTCTCTTGATGAATCAGAACTCTGCCATAAAGGGATTTTGTCTTGTAAA
AGTGTGACAATAATTTCCCTAGGGGCTTTTAAATTTTATTCGTCTGTACTCGTTGGATGC
TGAACACGCTGTTGAATATGATAATTTACTGACATGTTGGTGACAGAATAATCATGCGGA
CAGGGGAAGAAATATTTACTCTTTCAGGATTTCTGTTGCAGCATGTTGCATTTGCCTGAT
CAATGCAGTGATACCATATGTTGCAAGGTAGTCAGCAGTTCCAAGAAAGTCCTTATGACC
ATTGGCGCTAAAAGCATCAGATTCTGCCTACACAGAATCGAGATATTTCAACGTCAGGAA
GCAGAGCATGGTCTCAAGTGAAGTCACAATTGTAGCATAATTCAATTATACAAGTGTCGC
ATGAGAAATGATCAATGCGAGGGGAAAACAAAACAAAACAAAACAGCAATAACTTATGCA
TATAGGGTAATCGCTCGATAATAAAATGGATCACAAATTTACCTGCAATTGTGCACCATC
TGTACCACGAGCAAAGTCCAAGTAGAGATGTCTGCCTAATATGGTGACCTGGACTCTAAC
ATATAAGCTCAGCAGTGTCATGGCCCACATTGAAGACACCGTCCTTGTGAAACCTAGGGG
AGCAGAGAAGAAGTAAAAACAGTGAAATGACATGGATCAGCCTAGTGTTTTGTTGACATC
ACAGATCAGACAAAGAAGAAGAAAATAAACATGCCCATGAATCGGGGCGAGATAAACCAC
GGAAACATACTCAGAATTTTGATCTTCTCCCAGGTCTCGTACTTCTCCTCTGGCGTCAGC
TCTCCCTTCCCTTGCAGCAGCCTCTCGGTCAGGTGCGAAATGTCCAGCTCCTCCATTACC
CGCGAACGAAGGTAGTGCATGGCAAACGGCAACGTGGTCGTGTCTGCGATCCTCTGCACC
TTCTCAAAGTGGGCTTGCAACCTAACAGGAAGCAGCACAGAACACTCATGAACGAGTCTA
CTTCACCACATGTAAATTTTAGCGTTCCACCAAACCTGTACTTCCGTAGTGCATGACATA
AGTACCCCGCATCACCACCAAGACACGAAACCTATGAATCAACTGTTGTTGGCTACCACT
AAGACAACATGCCTGCTGATGTGCTCACAGATTAAGAGCACGGCCACATAATAAATAACA
AAGAGAACCCAAGACCTAGATGGATGTGATCCTGGACCGGCAAACCCATAATAAAGCACT
CACGAACGTTTTCCAAATGGGCTTGCAACCTGGCAGAACGTAGCATACAGCGATCATGAA
GGGGTCCGTCTATCTTCTTACCACACTAATTTCAACATTCTACTAAATGTATTACGTACT
AGAGTACATGACAGAAGTACCCCATATATCTATCGCCACCGAGACGCGAAACATATGTGC
TACCAACTAAAACAAGGTAGCCGCCGCCCCGCACATACATACATACATACATACATAAGC
AAGAGATTCAGTAGAGCGCATTTTACTGAATCTACGGAACATGACAGACAGACAAGCACA
GATGTATCACCACCGACAGAGTGAGTGAGTGAGTGAATGGAGCAAGTGCAGGTAGGAGGG
TCTAGCGGTTTGCGTGCTCACTGATTCTTGATGATCTCGTCGGCGGCGCGCTCCTCCTGG
GCGCGCTGCTCCACCCGGACGAGCTGCTTGTGGTGCGCGTCGTAGAAGCGGTAGGCCGCG
TAGCCGGCGCCGGCGACGCCCAGCGAGAGCAGCATCTTCCACCGGTGCCGCGCCCAGAAG
CCCTTCCCGGGGGCGGAGCCTAGCTGGAACATGGCTGGGTCGGGAGGCGAAACCCTAGCC
GCCGCTTGTCGCGCGGGAGGGAGGGGGGGTTCGCGGTCGGGCGGGCAGGCGGTGGCGGGC
AGGCTGGGGCGAGCGAGCGAGCGAGGAGGGCAGCGACGGCCGGCCGGCCGGCGGCGGGCG
GGAGGAGATCTGCGCGTGGTGGCGGAGACTCCGATCGGTGACGTCACCGGTGGGGGGATA
AGGCCTGGGGGAAATTGTTTGTTGGATGTAAAGAAATGGTTCGAATGCAGATCAAACATT
TTTTTTTAAAGAACTAGGCAATGTTGGAGGATCACCGAACAAAACACCTGCCATGTGTCA
TCGTATACCACCTGGCCCCGCCGCCGAAGATTCCGGAAAGAGGATAGCGACGCCCACGGC
GCCATCACCGACCGCTGGCCAACACCGGCCAGGCTTTCACCCGGTGCATCCGCTTTCACG
CAGTAGGCCGAGGTCGACCCGTACCACCACTCGACCGCGTGCGTCCCCCACCCAGCGAGC
ACGCCATCGTTGTGCAGGGGCACCAGCCTTCCTTCTCGACGACAGCCCTTCAGATACCAG
ATCGGGTCCTCCACCCCGCATACAACCGTGGACGGAGCTTCCCCGCTCCAACGAGCGGCA
ACCGAGCACCACCACCAGCCCATCAGCTCGCATAATGGGATGCTGAGGCCCGGATCTGGC
ACACGCCGCCCTCTGGAGCCCATCTAGTCCATAGCTTGCGCGCAGCTGAGGAGCTTTCTC
CCTCCGGGCCCTTCTCCCCCACCGCACGCAAAACTACGAGCTCGCACGACGGAGGCCATC
CTGCGCTCCCGCTGGAGGCACGGTCGGGGCCTACGTGCGCTAGCGCCCAACGCAACCTGC
CGCACATC