morexGenes - Barley RNA-seq Database

Contig contig_56970
Source Contig contig_56970
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56970 (7560 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_56970

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69800	1	1757 bp	MLOC_69800.1	Available	Available	LOC_Os06g06680.1, FRAME:+2, EVALUE:5e-41, 13106.m00690 protein expressed protein
MLOC_69891	3	1722 bp	MLOC_69891.2	Available	Available	LOC_Os02g49680.1, FRAME:+3, EVALUE:3e-146, 13102.m05632 protein arsenate reductase, putative, expressed
CDS Structure of MLOC_69800

CDS Structure of MLOC_69891

Contig Sequence (7560 bp)

>contig_56970 7560 assembly3_WGSMorex_rbca.fasta
AAATGAGCCTAGTATAATAGCCTAGTATAATGAAATAGTATAATGAAAATCTGAAATTTA
AATCTGAAATTTTGAATCTGAAATTTTGGAGATTTGGAGATGAGCCCTTGGAGATGAGCC
CTATAAACCGGAAAGGAGGGAGTACTTAAAAGACATGATATGGAAGAATGTCTAGGGTGT
ATGGAGAAGTGTTTGGTTGGAAGTGGGAAGGAGATCCTAACAAATCTGTAGTCCAAGCAA
TTACCACATAATCCATGTAAGTGTTTAAGCTACAGAGGCCACTGTCAGCCTGTCAGCACA
TCACATTGCTTATACCTAAGTTTTGGTGTGGCAGAAAGCAAGCGAGAGGAAGACGACATG
AGTAGCCTAGGATACAATGACCATGCCAAAGTATCAAGGTGCACTTGAATTTATGAAACT
TTTCAATTTGTGTTTACTTGCTCGACAAGCATGTCGGCTTGTGCAAGAAACGTCATCATT
GAGTTCGAGAATTCCGAACCGGATTATTTTCCCACTAGTGATCTACTCTTGGCTGAACTA
GGGCCTCACCCATCTTGGGCTTGGAGATCTTTATTTGAGGGTACAAACACTCTTCGTGTA
GGGTTGATTAGGAGTATTGGAGATGGTCGATCAACAAATGTGTGGAGCAAAAACTAGATT
CCTGGACTTCCAGATGAGGCCGACGTGTGCAACGTCGACAGTGCCGTCGATGTTGGTCTC
AGACTTTATTCATTTGGCAACAAGGGAATGGAATGCTCAACAACTACAAATGAAAATGCT
CCCAATGGATGTCCTGGTGATCAAAGCAAATTCCCATTAGATTCAAACCCAAGCTGATTT
TCTAGGCATGGCACTATGAGAAGTCCGTAAATTTCAGTGTTAAGTCAACCTACATAATGC
TCATAGAAACAAAGTTGCAACGGGGGAGTTGGTAGGTGTGGACAATGAGTCGTCAAACAG
TGAAAGTGTGGGGCTGGCGACATTTGTGGAAGACGAAGGGTCCCTCCCAAGCTGCGAGTT
TTTGCATGACGCTTAACTTGATTATCGCTTCCAAAAGCTGTCCATTTTCGACTTATCTCT
TATCCCCAGCTGACCGGGACTTTAACGATAAGTGATATCCTCAACATTGACCTTTTGTGA
GTAAAAATTGTACATTTTTAGTGCCTTTGCTAGACCTTTTTTTTGTACACTTTCGACATT
TTCAAATACATATTTTGAACACTTTTTTTAAAAAGGCGGTAGCATTTTTCAAATACATGT
TGTATATTGTTTTAATGGCAATAAACATTTTTATAAACTCTGAAGGTATATTTTTTAAAA
TTTATAAAAAAATCACGGGCATTTTTTGGAAACAGGTGAATATCTCATTAAAATGTCACA
TTCATTTTTTTTCTGGAAATAAGCATCTTTTTAATCTACAACACATTCATTTATATTGTA
TATGCATTTCTTAAATGCTATGCATACATTTTTGAATTACTTAATTTTATTTAAAATGTC
ACCTGCATTTTTTTTAATGGAAGCAAACTTTTTTTGGCATTACACAGACATTGTTTTACA
TTTATACACTTTTTTTGCAAATTTTGCAAACACAATTTTGAAGCTCGTGAATATTTATTA
AAATCTAATGTATGTTTTACCGTATGAAACATTTTCTTAAAAACATACGCGAGCATTTTC
CACATTGCATAAACAGTTTTTAAAAATGTGATACACTTTTTCATTCACAAACTTTTTCAT
ACACATGATTAACATTTTTATATACATGTTTAACACTTTCGAATGCATGATTAACATATT
TGAGAAAAATATGTAAAGTGGTTTTTGGATTATACATTTAGAAATTTTCAAAGCGTTTCG
GTGTTCATGCTCATCTGTACCCGGCCAGAAAAAATCAAAACAAATATTAGAAAAATTCCA
AAAATTCGATTTTTTTTTTTTGATGGTGGCTTATTTGATGGGTGAGATCTGCTTCAATTT
TTGTATCATTTGAAGATCTCAGCGGCTCTCAGCAGAAAATGACAAATCTGCATGAACAAT
AAACTTTTTTAGAGATTTCAAATTTGTCTTTTTTATTGAGAGCTTCTCAGAAGTCCAAAT
GATTCAAAAATAAGAGCGGACCTCACATATAAAACTGTCTACCACCCAAAATAAATTTGG
ATCTTTTTTTGAATTTTTTACTATTGATTTTAATTTTTCTATTCAGTGAACGTTTGAGGG
TGGGCGTTGAGATGCCTTAAAGAGTTAAGTAATAACATCCTTAAAGCGTAGTGGAAAAAA
TTGACCCAAAAATCAAACTAATTCACAAACTAAATTACGTTTGAAAAAAAATCATCCAAC
TGACTCTTTTGTGTGACACATTTGTCTTAGACGTCACACTACACTGTGTGGCGCTCGACA
TTACGTTGTGTGATGACTAAGATCTAGTGTGACGCCTAAGGCATACGCCTAAGACGAAGA
TGTCACACAGTATAATGTGACATCTGACTGTCGGACGTCACATAAATGAATCAGCTGGGT
GAAATTTTTTCAGACGTAGTTCAGTTTATGAAATACTTTGTTTTGTGGGTCAAATTTGCG
GACAGCCCAAAGCAGCACAACTCAACTAAACGCCCCCACTTGGCAGTCTCGAAGCAGCTA
GCGAGCAGCAGCAGCAAGCGACACACCCTAGCAGTCTCGCCGGATCTGATGGTGGTTCCC
TCGCCTCCCCGTCCTCGGCGCCGTCGCGGTGCCCCGCTCCACTGGCGCCGGGCGTACGTG
CGGCGCGCCGAGGCAGCGCGAGGAGGGAGCAGCGCCGCCGGCCGCTTCGTGGCCGCAACG
GCGCGGACGGGGAGGCTCGCCGTCGCCGATGAAGGCAGTCCACTGGACTGGACGAAGGGA
AGGAGAGGCGCTGCCACCGACCACGGCCGCCGCCGCCGCGCGGCGCGTCTGTTCGGGGGA
AAGGATGGAACCCGTACAGGCCCGTGCGGGTGCGTGGGCCGTGCCGAGGAAACGGCCCGC
AGGCCCGAAGCCCGAGGCCCCAGACGGCGATGGGGCGAGGCACCGGCTTGAAATACCCCC
GGCTTGGCGCCCAGCGTAACCGCCGCAACCAACAGCCAACAGAGCTCGCCTCCTCTCCCC
GCCGGAGCGCCAAGAAACCCCTCGCACCCACCTCTCGCCACCGCGCAGCAGCGCGCGCCC
ACCGCCGGCGAGCGATGGACAGGTTCCACGACGGGCAGCACGTGTGGCTGCGGAGCCGCG
CGCACGGCACGTACCTCAACGCCCGCGGCGACGGGAGGAGCGTCTCCCTCCGCCGGCGCC
GCGCCTCGCTCAAGGCGGCCTGGACGGTGCACATCCACCAGGGCGACGTGCCGTACCTGC
TCCTCCACAGCGCCGCCTACGGCCGCTACCTCGCCGCCAACGGGCCCCGCGCCGAGCAGC
GCCACTACGACGAGCCGGAGGTGCTGCAGGCCATCATGTGGCAGGCCTTCCAGACGGGCA
TCGGCGACGAGGTCGTGCTCCGCAACGTCGGCGGCCGCTACCTCCGCGCCAACCGCAGGC
ACCTCAGCTGGAACACCGGCGGCGTCAGCGTCGAGGACACCGACAACGCCGGCACCATGA
TGTGCTGGACCGTCCAGCCCATCCCCGCCCGAGAGGCAGGCATGCCTGACCTTCCTGCCC
CGCCCGTGAGTTCGCCATGACCAGCCTCTCGAATTGCCAGATTTCATTCGCTCTACGACT
CTAGAGCAATTCCTCATCTGTTCTTGCCAAATTTGCGCTTCTCCTGACGATTCCGGTTCC
TCAACATAACCTGCAACTCAACTGCAGAACCACTTCATGTACACCGTGCTCGGCCAGGCG
TGGCGGCTGATCGAGTTCGTGCGAGCGAACGCCGAGGGGCTCTACGACGAGGACGACTGG
CACATGTTCGCTCTCAGGGGGAGGTACGTGAACCACCTGAGGAACGAGCTGGCCGACCGC
ATCGCCTTCATGGACGGCCATGAACCCGACGGCATCGCCATGTGCATCCGGGCGGGCCGC
TACGGGAGGCCGACTCCACTCGTCGTCGACCTGCCCCGCTACACTGGCGGCCCCGCCGAG
ACCCACCAGATTGTTGTGATGATGTCCGGGACCCCTGGTGAGAGCCTCTCCCCATGCCAC
ACCGAGACCCACCATATTGTCTTGATTGATTTTGTTTTGCAAAATGTACAGATTTTGCTG
CATGGCTAATCTGCTTGTGCTTGAAAAATTGTTCACTGAAACTGTTATAATCTGAGAAAC
AGTTTACTGAAATTGTTCTAGTCTGAATTTTTTTTAACAGAAACTGTTGTAGTCTGAAAC
TTGTTAGGTGTTGGGAATTATCTCCAACTGCAGTAATCTTGTAGATAAATGAAAGACGGT
CTGTGGCAAGTTGGTTATTTGGGGGGAAATCATTATTGGAACTTAAAAGTCCAAATCAGT
TGATTCATGATTCATCTCTTTTCAGCCTTCACAGAGAAGATGGTGATATCCGTTTGATTT
CGCCCATTTTACTTGGATTGAATAACCTGTGAACAAACTTTAGGTTCCAACAAAACAACA
CTAAGCTAAATATATTTATATATTTTTGCATAACTCTGAAATTTAGATTGTTCATGTGCT
CCCTACTGATCTTCTTTATCGAGAAACATACTGTTGGACTCGAATCTGTTATGCACAATG
CACAGATGTTGGTGTAGATACTATTTTGCTGCATGACCATGATATTAGTGGAGTGCTAAT
CTGATATTATGATGTGCTTGTCTTTGGGACTTATCTGAAACTGCTGTAGTCTTGTACAAA
ATGGTAAAAGTAGGTGTCATGTGGAATTATCAGTCTGTTTTTGATTCAGATAGTTCAGTT
CTGTCTTTGATTCAGATAATTCAGTTCGTCCATTTGGTAACATTTGCCACTATTAGAATT
ATGGACCCTAAAAGGGCAAATCATGTCCAGTCATCTCATTTCTCCTTTGCAGAGAAGACA
CTGATTTTCTAACCCATGAATAAAATTCAGGTAGTATCTTACAATAGGGAATAAAAAGCT
CACAATATTGTTTCTGGCTTTGTCTTGTTTACATCATTGTTGATTATTGTTCTGCGGCCT
AACTGGTTCATACTTTCTGCTGATTCAGCGTACGATGAGCTGCGATACCCTGATGTCAAC
GCAATATAGAGAAAGCTCAGAGCGGGAGGACACCTTTTCATAGGTCGCGCCACCTCGGAC
ACGATGACAGCAGAACTGGATACCTACGTTTGCCTGTAGACACATAGATATAGGTTCAGA
AAACTCAGCAGCTCTCGTGCTTCTTCGGCTAGCTAAACTTGGTGAAAATGTTGCGTCCAA
TTGCTGAACAACACTGTAGTGATGATGGTTGTAGTAGTCGTTTTAGCGCTGCTCTTTTGA
CATTCATCTCTCTGACGTGATATTGCCACTGCTTCAGAGCATTTCACTGTAGTTTTTTTT
TTTCTGCAATGAGTTGATTCTGCAGTTTATTCAGATCATGCATTCCGCATAACTGGAAAT
TGCGGTGGTTTTGCAGTGAGTTGATGATCCTGCATTCCTGCATCCCTTTTGTACTATGCA
TTTCTCTTAGATAAAGCATCTGATATGGTTGTTCTTGCTGTTAGTTGGGCAGTGAGTTGA
TGATCATGCAGTGAGTTGATGATCCTGCATTCCTTTTGTAACTTGAGTTTAGATGTCGTT
CCTTGCTGTGATTTGGAGGTTTCTGCTGAGTTCTCTTCTACGCGATGGATTACGACGGCT
TCACCTACATTGTCAAATGAAGGAAAAATTCCAAATGTTCTAGTTCGTATATACAATCAG
ATTATGAGAATGTAAGTAGTGTCCTCCCGTTTCTTTATGCACTGAATTTAAAGGGTTGTG
TTGCTTGGCAAAGGTGTATCAGCAAAATCATGTCCCGTGGCATTGCACTGCTCCTTCAGT
TTTTTGTCAGCTATATGGTCACCTACAACAATAAGTTACACACTTCCAACCGGGAAGTTA
CAATTTTGTTTTGAACAGAGATGGAACTTGAAATTTTATTCCAGTAGATCATATTACGGA
GATGACAGCATATTACACACCCGCACACATGCAAGAGAACCCGGGCTTCGAATCGAATTA
TCGAAAGAAAGAGAACTTACCGGTAACTGCATGCTTCGGAGAGCGTCTCATGCAGTGAGT
GCATGAACTGCAGGTGTTGCTGCTTCTCCTGGTGTAATGGTGTAGGTCAAGGACACTTCT
AGCAAGTTCCTGTACTCACAAACATTCTTGTTCCTAGGACCAGTACACTACAACCAGCAG
CCAAAGGCCCGTGAAAGAGCCCGGGTTGACCCTTTAATCCGCATAATATACATAGAACAT
ATTTCATAATAGACAACTGAAACCCCGTTGATTAGAATTCAGAACCTGAATCCTTCATTT
CAATGGCGAGAAATGACGAACTACTACATCGCAAAGGAACCCCCAACAAGAGTATTTGGA
CCAAAGCCCGCGAACATTGGCAATTCCACGGAGACAAGCCATGCCATAAAGACCACCCAA
GAGACTAATGAGTAATGACCATCCATCAAGCAGTTGTGGACGCCTTTCGTGTGGCGACAC
TCTTCTTTCTTTTGCTCCTCAGAGGCTTCTCCACAATAGTCTTCCCAGATCCAGGGCAGG
GCTAACGTCCTCCAAATGTGCTAGCAAGCTAAGAAGTTGTATCTCGAAGAGAATCTCGTC
AATCTTGTCCTTCATTGATACCACCGACATGAACATCCTCAGTCACGGGTACCGCCGCCA
CAACGAACTCGGACCCCTCCGGTTGCTCACATGGTGGACCCTGCAATTGTGCCTTGGAAT
TAGGTGCCAACACACTAACCTCATCAACCTCGCCATCCATAGACACCACCTGCCTCATCT
TGTTCAAAGGCGTCGTCAAGGCCCCTGGCAAGCCCATCTCCCGCTGAAGCAGTAAACCAT
CAATATTCGCCATACCATTGTTTCTCATGCTCACATGTATATGTACTTATACAAAAAACA
TGTATATGTACTTATACAAAAAAACAAGCACTTCAGATATATTCAAGGTTCAATGATTTT
TTTTTTGAATTTTTCATCAGGGAAGGAGGGGAAAGCCTCTCAACCACCTGAATATATTAC
GTAAAGGAAAGAGGAGAAATCCCCAAATCCCGAGTGATAGATTTACACACAGAGATGAGA
AAGCGAGAAGAGCACACACCAGCCAAAGGGAAGGTTGTTAGATAGATCTAAGCACGCTGA
GCCAAACATCAATATGTGTGTGATTCGCAGCTTTCATCCTGGTCCACCACAACACTGTGT
CGTCACAACAAGCTTTAAGGGTGGCGGACAGAGATGGCGAGCCGTCCCGGAATACCACAG
TGATCCGCCGCTTCCAGAGCCTCCAACAGCAAAGGAGGATGAAGGTGTACAGAGAGGCGT
CGCCTGTGACGCCCTCGATTTAATCGNNNNNNNNNNNNNNNNNNNNNNNNNNACGACCAA
ACCCAAGGACTCACGAGAAGATATCACAACACAAGTCTAGACACAAATAAAATAACATCA