morexGenes - Barley RNA-seq Database

Contig contig_56955

Source Contig contig_56955

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

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Map Locations of contig_56955 (4524 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_56955

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69789	1	422 bp	MLOC_69789.1	Available	Available	None
MLOC_69790	1	513 bp	AK358750	Not available	Available	None

CDS Structure of MLOC_69789

CDS Structure of MLOC_69790

Contig Sequence (4524 bp)

>contig_56955 4524 assembly3_WGSMorex_rbca.fasta
ACAGAGAGGGGCAGGGCGACGGGAGCGGCTGAGCTACTGTCTCCAGCGGGGGGTAAGCAC
AGAGGAGGAGGAGGAGTAAGTAAGCACATGGTTATTAAATGCAGGTGTTTTCTCAGGTTT
CTGCCGACAGCTCCTGATTAATAAGTGCTAAACGCAAGGGCCTGGGCGCAAAATGACCAA
ACCTGACCCACCTGTCCACTTGGCAAGCTGTGACTGACTGTGGACTAAATCTGCACCACA
CATGCAAGTTCTAGAACCAAATAAGTGCACTTTGCAAGTTCTAGGACCAAACCATCACAT
GCCGTGCAAGTTCTAGGACTTGGGGTGCTATTACCTCAAAATACTCCATACAGTTTTATC
ATGCATTCATGCATGCTTTTGCCTCTAGGCCTCATCATCATCTACTCCTTTCCCTTCAGT
CCTAGTACCAGCATGCTGTGACTTGCTTCTTGCTAGTTTAGTTTTATATCACTTCTTTCA
CCCGTTATGGAGTATTTCCCTTTTTTTTCTTTCTTTCTTGGTACTCAAAGCTATAGGCTA
TAATAATGCTACTCCATGCATGCATACTCATATATAGCTAGGTCCGTACTCCAGCAGTAC
ACTGCTCTAGGACACAGATATGTAGCGGTGCCTCCTGTTTTGATGCATATGCATATGTTG
CTTGCAGCTGGTGGCATCTCGATGAGTGCCTGCATGCCAAAACCCTAACTAAGCTAGCTA
CCAGTACCAGGTAGCGACTGCGGCCATCTATTTGCATGTATCAAGCACCACCTGCAGGGC
AGCCCTGGGCTGGATCTGGGGCAAGTTTGACCGCGCCAAACTGGTGATTGTTGATTCACC
GCTTTACCTGCAGGCTCGCTCGGGGCGAGGGGCGTACCACACCCCCCCTGGACGGAAGCG
AGGAGGAGCGTGCACAAATCCAGCTAAACCCCGCGCGCAGAGCGATCTGATCTCACGACC
CACTCATGTCACTAGTTAAGGTTTTACTCGCATGCAGCTGGTCAGGTCAGTGGTCTGGCC
ACTGTGCGCAGGCAGCAGCTCATGATGCGTGCCCTGCTGATCATCGAGAGTGGTGAGGAA
GAAGAAGTTTGGTTCTGTTCCTTTGAATGCTGGTGCATGCGGTTGAAAAGATGGGGTAGA
GGAATGTTTGTTTGCTTGCACATTGATACTGGCGACCATTAATGGAAGCCGCAGCAGCAG
CAGCCAGCAGGGCATGCATACATATGCTGCTGCGTCCGTCCGTCGCCCCGGCTCCTGCAA
GCGAGAGGCCGGCCAGTGTGGCAGCGGCAGGGGTGGTGGTGGTGATGATGGAGCTAGCGG
CGATGGAAAATGAAGTTGCATCCAAAGTGGATCCCCCCCAGCGAGGCCGGCAGTGCTGCT
CAGATGTGCATTGTTATTGTTACTCACTCACTCACCACACCTCACCACCAGCCACCTGTT
ACGTATATTTACTCCTCTCTCTCTCTCTCTGGACATGTTCGATCTCTGTTTTGCCTGCTG
CGTGTGTGTGTGTGGCGTGGAAGTCACGGGCCTGCGGTGAGATGTGCAAGTCACCAGGCA
CAGGGGCAGGGAAAGTATCTTTGGCTGTTTCGCAACTAGACATGTGTACATGCCTGCGGC
GTGCAGGGCTGTGCGTTTGCATGGGGTGAGAGAGAGAGAGAGGAAGAAGAGGGAGAAGAA
CAATTTGGTCGCTAAATACCACGAGGATACCGGCCGTCCGTGCGGTACAATCCCTTCTCT
TCTCTTCCTTTCTTTTTCCTCCTCCTCCTCCTCCCGCCTCGCAGCAGCAGCAGAGCGAGC
TTGCTTTTTCGCTTGCTTTTCCTTGCTTTTCTCTCCTCTCACTTTTCTGACCGATACTAA
TATATTGCTATTTGATGGTGGATCGATCGGCCCGTGCGTGCGTGCATGCATGCTGCGTCT
CTCCATGGATGGATGGATCGATCCAGCTTTACTGCAAAATGTTCTCCTGTTCCATCGTGT
GATCACATCCATGGCACGCCGTACATCCGACGGAGACTTTGGTTTTGGAGCTATCCGTTG
AACGGGCCGTCGATTTAATGCCCATCCATCTACTCTCATATCTGCATCTATCCATTCCAT
CTCATGTAGAGTACACGTCCATCCGGATCCGGTCCTTCCCTGCTGCTTCATCAATTTCTG
CAGTCACATGCAGAATCACTTATCTTCGCAGAAAAAAAACCTAAAAACTTATCACATGTT
AATTTCTACAGCTTCAGTAATTATTACCTTGTATCAAGATCGTAGGGACGGTAGCCATAC
TTCAGAATTATCTCTGAGAATTACCAGCAACAGGTAACAGCAAGAGTCAAGAGAGAGAAC
CGTGCACTGTTTGACCAGTCTTTCTTTGTACACCTTGGCCATGGCGCCTTGTCTTGCCAA
AAAAAAAAGAAGATAGATGCGGCTACACTGCATTTTAGGAGTTCAGGAACCTACCACATG
CTTTAGCAGCATACACATTTTTTTCTCGAGGAATTAGTATGTATCCATAGGTATACATAA
ATCTAGAGAGATCTTCTGCTGAGATCTGAGTACCTGATCAGTGTGCATGATCCTTACAAA
TCTGGTGCTGCTGCACATTGACCAGTACTATGACTCAACTAAGCACATTATATAGCATCT
ACAATCGGACTGGACGAATCCACCCTCTATAAGTCGGACACGCCAGCGGCATCCGATGAC
TCCTTATATTTTGCTCCGTGCATCCATATATCTCTTATCCGGACTCTCAAATTCGTGCAA
AACCATACACATCGATTATCTGATACTAAACGTCGCACGTAAAATAAATGTTAGTACCGA
ACATAAAAAATGTTTACAACAATTTTATTTGAAGTGCACAATCAATCATATGCTTTTTGA
TTTTCATTGGATCCATATATGGTCCACCAGATCATTGACTGTTGCGTATGCGCGTGGTGA
TCTTAGAGATTCTGATGCATATGTAAAAAATTCACAAGTTACATTGCATCTTGATCTTCA
GGGATTTCAACTTGTTCTCCAGGTGCTTCGAAATTATTGATTTGGGCTACACAATCACCC
TCATCCTCGATGATTATATTGTGCAAAATAACATGACATGTCATCAGCTGTTATAAAGTT
TATTGTTCCCACATCATTACAGCCCCACGAACAATTCCTCAACGCGCTTGCAGCACTCCA
AAAGCCCTATCCACATCCTTCCTAGCTGCTTCCTGCATTGTTGTGAACTGCTTTTGTTTT
CTGCCGTGTGGTTGGGATATGGTCTTCACAAATGCAGCGCACTGAGGATATATGCCATCG
GCAAAGTAGTATCCTATGTTGTAGTCTCGGTCGTTGATGGTGTAGTTGCACGGAGGTGAT
TCCCCGTTGCAAAGTCTCTTGAACACCGGAGATCGTTGAAGCACGATAATATCGTTGCGA
GAACCTCACATTCCAAAAAAGCATGCCAAATCCATAAGTCATGTGATGCCACCACCTCTA
GTATGATGGTGGCTCCTTTGTGTGACCTTGGTACATTCCTCGCGAACTTTTGGGACAGTT
CTTCCATTACCAATGCATGCAATCGATTGATCTGAGCATTCCTTGAAACCCTCCGACCTC
TCCAATAGCCAACAATTTTTTCGTGTCATGTGCATTTGGCTCTCTCAGATACTCTCCTCC
AAACACCTCCACCTCAACACAGACAAACTTGACAGTAGTTTTTAGGCATGTGCTCTCGCC
CATCCAGTTTTTAGGCATGTGCTCTCGCCCATCCTGACCATCTCACCAACGACATCTGCC
GCAGTACCAAGTGTAAGCATCCTCATAGCAGTCGTACACTTCTGCTTGGCACAGAAAGAG
AGTTGACCGCAACAATCCCTTGTGAGCCTGAAGTAGTCATCACGTGCCTCCACTCCCACC
ATAATGCGTAAAAACAATGGGTTTCGCATGCGAAAACGATGACGAAAAAAATGCATCATC
CGGGAAAGTTGGGTCCGGGTCAAAGTAATTCTTCTGTATTAGTTTTGCTCCGGATACCCT
ATCCAGATTGATGACTCTTCTCCCTTTGATTGAGCTCTTCAAAATTAGAATGTGCTCCAC
TTTCCATCCCATTTCCTCTTGCATGCTCATGAGCATCATCATGTCCACTTCTTCGTCTGA
ATTCGATGAATCGAAGAGCTCATCTTGAATCAGTTGATCAAGCTCCGTTGGTCCATACTC
CTTGTCGGATGAAGCATCACAATCCATCGTTTCCCCTAAAAATTTGACCAACAAATCCGG
TTAGACATTTTTCCGAACACATTCGGCGCAAGGCACAACCAGAGAGTTGCTGGACTTGCC
ACAATGTCTTCCGAGCTGGCGATGACGTCCTATGCAGAGAGGTCGGGAGAGAGACCCCTT
TGATCGAGCGACCGAGATGGCAGAGGCTACTAGGCGACAGAGCACACACGACGACGGAGC
TGCAAGACGGACGACGCGTGGAGGAAAAAGAGAGGAAAACAGGAAATGGACAGCGCACGG
AGAATCATGTGGACATGACTGAGA