morexGenes - Barley RNA-seq Database

Contig contig_56924
Source Contig contig_56924
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56924 (7808 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location
Predicted Genes from contig_56924

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69770	3	2008 bp	MLOC_69770.2	Available	Available	LOC_Os03g01008.1, FRAME:-2, EVALUE:5e-108, 13103.m12820 protein expressed protein
CDS Structure of MLOC_69770

Contig Sequence (7808 bp)

>contig_56924 7808 assembly3_WGSMorex_rbca.fasta
GGGGGGGGGGGAGGAGGAGGGAGTGTCGCCCCCCGGCGGCTAGGGTTTGGGCGCCGCCCT
AGTCGCCCTAGTGGGGACGACGCGGGGACAACGCGGGGGTGTAGATCCGTAGCTAATGCC
CTCGTGTGATGTTCATCAAAGAAAACTGATTGTTTCACCCTCACAATGGGTGACCTAAAA
AGGCTTTGAGCTAATGCACAAGTAGGATCAAACGTGGTAAAGTATATGTTGGGTGACATG
GGTGGGGCAGGAAGCAACATAAATGTCTGCTAAAAGTGGCGGCAAAGCTTTTAGAGATGT
GCACTCTTGATAAGTGTATCATGAATCCTTCCCTTCAAATCATACTGTTTATTCTACTTC
AATGTGTCCACAAAATTAAATGTGCACGATGAAAATAGCAAAGCAGAGCAGAGAGGTCCC
TGTCCTGGAAGATTCTACTCTACACCAAATAATTTCCCGCCTCGGTGGAAATTCAGGAAG
CAAGAAACAGTAGTAATGGATCCTATCAGCCACAGAAACATCGTTACTTTGAAAACAGGT
TAGGATTTCCTTATTGTGGTGCAGAGCTTAAAAATATCCCTCAACATGTGTTGATGACAG
GACAAACATGAAATCAACATCTTCTAAAACAAATCAATGTAGAAAAGATCAGTCAATAAT
TAAGAACATGTGAAAGGAATTAAGTGTGTTGACGGGATGAAGTAGCCAAAACAAGAGTGA
AAACAGAAAGCTACTCCCTCCGGTCCAAAATAAGTGTCGTAGTTTTGAACTGGGTTAGTT
CAGAACTGTGACACTTATTATAGATCAGAGGTAGTACTGTGTAGTTATTTCCTATATTTT
TGGCACTCAAATACTCACAGAAAATACCTTGGGCTTCATATTTTCACACTAAGAACTATC
ACCACCAGTTGGACGCATGTAAACACATGCCCAAGTGCCCATGGGAGGGAGGGAATCTAT
AAGTACCATCCGTCTCATTTATCTCTTTTTTTGCACGGGGGATCTCCATTATCTGATGAC
AAAGGTTCCAGACTCCACCTCCTTTCTGCATAAGTGGCTCAAGAATGCATCCAGAGGGAT
CACATTGATCCGTTCTTCCTCGGCCATACCATTAAGAAAGGATCATGTGATCCTTCAGGA
TGTCTACTCAAGCCATTTTCTCGAAGACATATTCTTCCGTTTGACATTCTGGAGCTGGCT
CAGCGATGGTACCGCTGGTATTTTTGCGCTGTTTATCTTCTCTATTCACTTTAACAGATA
ATTCTGTGGGATTTCCATTTATCAAAATATCAATCATGTACTCCCTCCGTCCTAAAATAA
GTGTCTAAACTTTGTACTAGCTCTAGTACAAAGTTGTACTAAGCTTGGAGGGAGTATGAT
ATTCTGATGTAACCAATCCGTACGTGTCTCTCCTCACCCTATATGCTTTCGTCTGGACGT
CTGTTTTCTAGTTTAAGTTTGCCTGGTTGAAAATTCTCATCTCAGTAGTGCATCAGCCTC
TCATACTCTCAGCTGGAAACCGGAAGTATCTATGAAGCCAGTAATTTGAACCCCAACATG
ACCAACAGAGGGAACCGTCCACATAAGGAGAGTGTGGAAACCATGGAAATTTACATGATG
CGAGAGAAGGGCCGGAACAAAGAAGGAAAACAAATTTATCAAATCTGTGTAATGGCATCA
CAACAATGTGTGTGTATTAGTCTTCCAAAGTACTCCCTCCGTACCTAAATATAAATTTTT
TAAGATATTTCACTAGATGTCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTATATACATCCATATGTAGTCCATTAGTAAAACCCCTAAAAAGACTTATATTTAG
GAACGGAGGGAGTAGTAATAACCCATATATTTAGCAACTTTTTTTATAGGACTGGCCAGC
ACAAATACCTACAATTCTGCGCACTTCTATATTTGCTCAAGAACATCACATCTGCATTAG
ATATGACTGATGCATCAGTAATGCACTTTATGCTCTAATTCACTCAAGCAAACATACATT
TTATGGGGACCAAAATCTCAAGGCAAACCATGGAAAATACCATCACAGATTTAATATAGC
AAACTTCTGACACGATAACATTAATGTCAAGAGAAACACTTGCAATTTAATATCAGCTAT
ACATGAAGGCAGTTAAATACTAAATGCAAAAAAAGGAACAAAACAGCACAAGCTTGCCAT
CAGAAAGCCATGTGTAATGCTGAAAGAACTCCGATGTGCAGCACAGTTGGTCAAAACAGC
ATGTAGCAACAAATTAGCTAGCCATCTAGATCATCTCAGTTAGTAGTCATATCCAGAAGA
CATCTGCTCTTCGTGATGTTCAGTTCTATTCACCATGCTAAGAAACTGTGCGGCCCTTAA
CTGCAAACAAATACATCTGGCATATTAGATAACTTCAAAACCTGTTGGACATGAGAAGCA
TGATAGGTAGAGGTTATATGCATACCAGGGCTAACAATCTTTATCCTCTTAGTAATAGCT
CTGACAGAAGTAACAGATGTAGCTCCTGCACAGACAGGTATGCATAGAAGATTTGTTACA
AAAAAGTGATGATAGGATGAACAAAATCAAGACAGTGCAGCATCTTATTAGAGCTTTCTC
TAACCTTGCGAATTGATATCTTCAGTGGGATCTGCTGACATTGGCTTCATTGATTCTGGA
AAAGCTGGGTCAGCAGTCATGTTGTTACTCTTCACAGTGGGCTGTAGTCTGTAATCATTC
AATTTACACAACAGAACCATCTTAGCATTCATAGAATCATCAAGGACAAAAAAACAAAGG
CATCTAATAAGAGCACCGTAGCATACCTTTGAAGTTCAGCATTTGTGGAAGGATTCTCAC
ATTGAAGGCCTTCATTGTCAAGATCAAAGTCCAGCAGAAGTTCCGAAAATGAAAAGTCAC
CATCAAATAGATCAAAATTTGCGAAATCAATGTCAAAGTCATCTTGCTTCTCTCCATTAC
TGGTAGAGCTAGAGGGCTTCTCAGAAACATGTTCAGTTGAAACTGGCCTTGCATCTGAAC
TGTCAAAATCTAACCTCCCTTTCACATGTTCCCTTTTTGACGATCTCTGGGTGCTTGATT
TTAAGGGCGAGCTGACATGGCAACTCCTCTCGACAGAATAGTAGGTGCCCCCTTTCATAG
GACTGACTATTAGTCTCTTGGAAGAAACTATAGAGTATTGAGAGGAAGCAATCTCCTGTT
GGGAATGAGCATTTGGAACCACAGATGACGGCCTTTGTGATTGACAAGAAGCAGGTTCTT
TTCCCATGGGATAGCTTAGTTGAGCTGTACAAGGAGAAGAACTGACTTGAGACTGGAGTG
GAGTGAATAAGCTTTTTGCAACTGATGAGGCTTGGGCCGGCAGTTTTGCAACCACTGAAT
GTTCAGCTGAACTGGGATGTGCAGTTTGCAGTTGAGAAGCTGCACTTTTACCTGGCATTA
GAACAGTACGTCAATAACTGGTGATGCTGCAGGAAATGACGGTCAAGTTATGCTAGTATT
TTCAAAAGTGTACCTTTTGTGTTCAAGCTTGTAGACGGTGCAGCACACATTCTCTTGGAG
GCTGAAGTGGTTTTTGCAGCAGGCTTGGCTGCCTTTCTTTTTTTTGTAGGCAAAGAACTG
GCTGCTGGGGTGGACATGCTGTTGGCATTTGAAGAATTCTGAACAACAACCGAGGAGGAG
GACTGGGTGTAGTGTATCATAGGCGTAACATATCCAGAGGAGCCTGCAATAACAACAGAA
AAGGGACCTTGTTAATTTCACGATGAATAATAGCACCAGCCACCAGGTGATAGACTGAAA
TCGAATACACAGTGTATGGATGGCAAAAGCTGCACGTAATAGGACATGACTAGGCTGCAT
GTGGAAGGCAATTGGAGGAGAAATGCAGCATGTGCCAGTTTTTCAAATGGAAATACAATG
TGTTTGCCTTGTCATATTTGGGAGTTGGTTATTGGCATCGGTATTTTCTCGACTCTATCA
CGCGTATTCAGGAAGAAAAAAATACCAATGCACACAGTCCAATTCTAAAAAACATAACCA
ATTGACAAGCCATCTACTATCCATGTAACTGGTGTGCTTGTGGCCCAAAATATATCTAAC
AGTGCAGTTCAGAAACTGAACAAAAATTTAGGCAAGAATTACAAATTTATGACAGTACAC
ACTTTCCAAACCAAAGGTTTACAAGTCACGGGGCAGTTCAAAATTATCCCCTAAAAGTTA
AATCAGACGCAAGCAAACAAGGGATTGGAATCTAGTCTAGTACTGACGTGTATAAGTAAC
CAAAGGGATCGCATAGACTAGCACGCATAACGTCGAACAAGTGGGGGGCACGGAGTGAAA
TAGTGAAGGTACCTGTAGGAGGCGGGGGGATGGCCACCATAGGTGGGTGTGGAGGAGAAG
AGGTGGTGGGGCCGACGAAGAAGGGCGGGACGAGCGGTGGTGAGGAGGGCGCCGCCGCGA
GATGTGTGGATGAGCCGGGATGGTAGTAGGTGGAGACGAGGGTCTGCATGGCCTGCATGG
CGGAGTCGACGGCGAGGCGTGACTCCTTGAGGGAGATGTAGTCGTGGAGGATGTCGGCGA
GAGGGAGGAGGCCCTTGGGGGGGACTATGTTGTTGCTGGTCTTGGCGAAGAGGTGGGCGG
CGTCGGAGCGGAAGGCGGCGAGGGAGGCCGCGAAGCCATTGTCGGCGAGGTAGCGCTCGA
CGAGGAAGGCGACCTGCAGGGGCGTCACCTTCATCTTGCCCTTGGCCTTGTCGGCGTCGG
AGGCGGGGCTGGGGTAGGGGTTGGGGTTGGGAGGAGAGCTCGGCTTCGGCGGCGCCATGG
CTAGCAACGGTACCGTAGAATCCTAGATCTCGATCTCTCCTTTTTCGTGTTTCTATATCT
CTCTCCCTCTGTGTGCGTCTCGGCAGTTTTTGTTGGTGAATTTGGAGGAGGGGGGAGGGA
AAACGAATGGAATTGGAGTGAGACGGTGGAGGGAAAGAAAACGAGTGAAGCAATGGCGGG
CTGGCGCGCGCCAACGAATTGAAGTCTTCAAACGATTGCGTTTCTTTCCTTTTTCTGGCG
CGAACGAGGAGACGACGGCGAACCCTATTTGGCGCTGCAGGCGCCCGTTAATGTGTGTTC
CGCAAGCGGACGCCTGCAGCGTCTCGCATTGGGCTGGCCCATCTTATCCTTTTTCCTTTC
CGTTTTATTTTTTGAGATTTTCCCTTTTATTTTGAAAAGGCAAAAAGAAAAACAGCGTCG
CGGGGAATAGAAATACCGATCTTCACTTGGAGTTCACAAGCACTAACCACCGCGCCACCT
CGTCCGACTTGATGACTAACATTTTTCTTTTTGCATCTTTTCTCATTTTTTTGGAAAAGA
TTACCTTCCACCTGCCGATCACGAGCGCCCGTCAGCCAGTTTCATGGCCGTTTGATCGTG
TGTTGATCATACGGTCGACAGCGTCCCCGCATCCATCGAAGCCGCTTTCGTTTTCTTGCA
ACTTATATGTTGTTTCACGACAGACATTCCTGATACTCCGTAACAATAGGGATGTTTCGG
GGTTCGACTCGCTCGAAGGGCAAGCGTCTGGATTTGATTTTTTTCTTTAACATTAACTTT
TGAAACAGCAAAACAGTTGCAAAACACAACTACCGCATTACAGAAACAATTTCTGAAACA
ACGGATGTGTTGCAGAAACAACAACCATGTTGGAGAAACTTCCTTTTTTATTTTCTAACC
CATGTTTGCAATAATTATGACATCTTTTGACCTATGTAACAAAAATTACGACATGTTACA
AATATTACGACATCTTCTGACCCTTGCAAAAATCACGACAACTTCTTACCCATATTGCAA
AAATTATGACATGTTGCAAAAATTACGACATCTCGTTTGTTGTTTGAATAAGATCGAACG
GACGCATATGGCTGAGCGCGGAGATCCAACGATTATCTTGGTGACGGATGTTTAGGAGAC
ATATATTGGTAGACGCGTAGCGCTCCCCTATTTATTTTTTGTTTTTTTTGTTTTTCGTTT
TTTTGTTTCTTTTTTTGTTTTTCGTTGATGTTTTTTCTTCTTCCTGGCTTGTTGATTTTT
TATAATTCGTGAACTTTTCTTTAAATCGACGGACCCTTTTTCCAAATTCAATTAACTTTT
TTCAACTTGAATAAACTTTTTAAAAATTTGAAGAACTTATTTTCAAATTCAATGAACTTC
TTTTCCAATTTGATGACCTTACTTACAAATTGATGACTTCTTTCAAATTCGTAGAATGTT
TTTCAAATCAATGAACTTTGCGTTTTCAATTTTTATGGCCTTCTTTCAAAACTGATTAAC
TTTTTCCAAAAGTGATGAACTTTTTTCAATTCTACAAACATTTTTCAAATTTGATGAACA
CTTTTTGAAAACTTATTCCATGTATGGTTGAATTGGCAACTTAACTGGTAAGACCAAAAA
ATATGATTTGGCCCCTTATGTCAAATCAATAAATCAGGGTGTAATACAAACTGTGAAGAC
TATTGTGGTCCCCTATACTTGTGGATTATCAATTACCTTCTCTTAGAACTTGTCCTTGGA
CGAGCTTGATGACGGCATAGATTTGTGAGAAAAATAACCCGAGATAAGAATGAAGGAGAA
ACTTACGGTGGTCAAACGATGTGCCCCGTGCGTGTGAAAACAACTCATGGTCGTCCTACG
TGGCACGACCCCGTCTCGAGAGTGACCACGCCACTCTCGCCACTAATAATGTGGGCTCTC
TGCTATCATCGGCCAAAGTAATCAGTAAAGCCCCGTCCCATAAGGGGTATTGTGGTCGCA
CATGCAAGGTTGGGGTGGTCAGTAATTCTTAAATCTAATCCCGTCTTCGAAACCACACAC
ATGAAACCTTTTCGGTACACCATTTCTTTCCAAGTGGTCACCCATCTCCCTCGCGCATTA
GTAGCACCCGACGGGGTTTTTGAAATCCTTTGAAATCATTCATTTCATCATCACCATGCA
TAGTCCCATTCCATCTGCGTAGCAGCTACTAGTGACCTAACTACTTCCCACCCGCACAAC
ACTCATAGGTGGTAGGGTCATGCTTAAGTTCAAGTATCAACGAGAGGTTTCTCCGAGATA
ACCCACCAGGGTGGTCACCGTCTCATCATGAATCAAATCCAATATAATATAGTGTTATAT
GGCATGCAAAATAAATGGTTTCTTAGACANNNNNNNNNNNNTGCTTGCCTTGCTCAACAA
AGTCTCAGGGTCTTTAAAGTCTTCTGGTACAAATCCCTTGCTAGTAATGCAATCTATCGT
CGCAATATTAACGGGCAAAAATAAGAATGCCACAAAACAGGGAAAGTAATTTGCTCAGAA
AAATTTCACCCTATTTTTGTAAAATACTAGGGTGAGTGTAGGTACTGTAAAAATTGCTAG
GTTTTATTTTTGAAGTGCAAAAATTTGTGAAAAAACGTTTTAACAGAAGGTTAAAATGTT
TAAAACTAGGTTTTAAAATAAATCAATGCATAAAAGTTTTTGTAAAAATTACACAAGTGG
TATTATCAAATACTACACAATATTACAATATTTGTGGTGAAATAATAATTAGATTTGGAT
GCATATTTGCTTCCATGGATTTCTTGCAAAACAGAAAGAGTTGGAAAAAGAAAAAGGAGG
GGGCCTCACAACATGGCCACAGACGCGAGCAACTGGGCTAGCCCACAGCAATCGGCCCGG
GGAGAAGGGGGTGCGTGCGGCAGGGTTTAATTCAAACCTGCACGCGGGCCCCCCCCTGCC
CCGGGGGG