morexGenes - Barley RNA-seq Database

Contig contig_56908
Source Contig contig_56908
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56908 (9041 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location
Predicted Genes from contig_56908

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69755	1	488 bp	None	Available	Available	None
MLOC_69756	4	2386 bp	AK249633.1	Available	Available	None
MLOC_69754	1	4166 bp	MLOC_69754.1	Available	Available	LOC_Os05g12760.1, FRAME:+2, EVALUE:1e-18, 13105.m01388 protein retrotransposon protein, putative, unclassified
MLOC_69753	1	319 bp	MLOC_69753.1	Available	Available	None
CDS Structure of MLOC_69755

CDS Structure of MLOC_69756

CDS Structure of MLOC_69754

CDS Structure of MLOC_69753

Contig Sequence (9041 bp)

>contig_56908 9041 assembly3_WGSMorex_rbca.fasta
ATTACTCTTATTAATTAGTACTATTATTAGTCATGCATGCGCCCTCCCAATTTGGTGCTC
ATGCATTAGTACTAGTATTTTCTCAGTTGATTAGGCACATTAGCATCTACACCTGCTACA
TCTCACAACCAATCGATGACTACCTTGGTCCTAGAGATTTTCAAGCATGCCTTCTAAACC
GTGACGAAGGGAGTACTTTTGAGCATTAATTATGTCATGAAGATTTCTCTTGGTCTACGT
GCAAATCTCTATATGCACAGTTTTTGGCGGATGGAGGGAGTACATAGGAACAACCTCGTC
ACATGTTGTAGTTTAAATGTTTAATTATCCAAAAAAAAATCTTTTAGATGAATTGTCATT
CCTTTTTACTTTATGATTTAGAGTGCATAATATGCACAAATTCTAAAACACCCAAGCACT
TTTTTGTTCTAGAATCTTCCATACTTTAACTATCCAAACTTTTTTTTCAAATGAATTGTC
CCGTTTTTTTACTACTCCCACGGATCCGAATTAATTGTTGCAGCTTTAGTACAATATGAT
TTACAATGCGCAATATGCACAAACCTCACTTCACAGGCACTTCTCATTTGTTTTAGATTC
TTCCATACTTTAATTCCCCCAAGTTTTTTTCCCTTCTAAAATAATTCCATTCACTCTTTA
CTTTTTTTTGTTTTTGCTCAAAGTTATGAAAACGCGTTCATAATTCCATTTATCTTTGAA
GATGCAATACTAGCTACTCAAAACTGCAATACGAGATACCCAAGGACAAATGTGCTGGAT
ATATTTGAAATTTTCATGTAGTACTATACCTTGCAGTCTTCGAATATTCTGTAGTTATAA
TTTGATTTTCAATGGGATGAACTACGATAACTAAATCTACATCTACGCCATGCATATTAC
ACTCTTCAAGAGCGGAAGTCAGGACGCACTCTCGGCGTGTCCACGTAGGCAGCATAGGAA
CGGTATATCGTGCTAAATAAAAGCAAGAAAAAAAACACAGCGATTGCAATGAATTTTCAT
GCGACTTTGTTTCCTTTGTTAGGAAGGCAACCCCACATCACACGCAACCGTCCCCTCATC
TCTCGCATCAAGCATCACCTCCTCCTCTCCCTCCCCGCCTTCCACGCCGTCGGCCCATCA
CCGTGTTGCCGAGGATCGGTGGAGGAAAAGCTAGCTGGCGGCGGTGAGGGCCTTTTGGAG
CCGGATTCAGAGGTGGAGGACTGCAACCAGTGTCCATCGATGGGGGGAGGGGGAGCAGCA
GCAGCTGCATCAGTCGGCGAACGAGAAAGATGGCTCCGCCCGGCCGCCGATGACCACCAG
CCAGTTGTGCTCGGCGTCATCCTATTCTTTCTTCGCTCGCCCTGATTTCTCCAGGACCGT
CACCAACAGCAACAAGAGGAAGGTCAAGCCCTGCACCTCCAGGTTCCTCTCCCTCACCCC
ATCGGCTCTCACGGTGCCGTCCGTCCAACCGAGAGGTCAGTCCCGGCTCCCCGTGTCCTC
GCCTCCATCCTCTCTCACTGTCATGCACGCCATCTCATCCATGGGTCCATCTGCTCACGC
ACGTTCATTGATAAGCAGTTTCAAGGGTCAGACATGGAACAAGAATAATGAGGCAGAGCC
ATCGCTACAGTCGTTGTAAGTGCTTCTGGTGTCCCTCTGTTCAACGAACTGAATCTGTAA
GTCTTCTACTGCTTGTTGTTCCTATGTACAAGTCAAATAAGCAGCTAAGCACGATATCCG
CGTTTCTACTAACTGAACTTTGTTCTCATTGCAGGTTTTTATTACTGCAAACCAGTTGTC
TGACTGTAAGAATTGAGTGAATTTATATGTGCCCTGCAGTTTACAGCAAGTGTTGGATAT
CAAGTTATCAACAAAACATCATATATATTTTTTTGTCAGAGTATATGGTAATCATTGGAG
TATATGAATATTGTTGTTTGCAGTTGCATTAAGAAACAGATCATCATTTCATCCAAAGAG
CATGTTCTGGAATCTGGATTTTTATCTGCAGGTCCTGATTGTTATCCTTGTTCGATACGA
AGCATTTTTCCTTCATTACCAAAAATTCATGGAGAGAATGCAGTGCAGTTTCTGAAGATT
TATATGTTTTTCCTCCATGCCAGGGAGCTATGTGAGTAGTGCAGTCCCATCTCTACTATT
TATCCATAAATTTTAACATCATGATACTGTTAAGAAAAATTGTAATGTAGCGCAATGAAC
AATGCCCAGATTAAATTAGCCATCAAAGGTACTTGCCTTTAGAATTATTTCCACAAACAC
CTCTCCAGATGGTTATTCGTTCTTGAAGAGATTGGGAAAACACAAAATAGAATCTGAGCC
TCAAGACAGCCAGCCCCCATAGCAACCTTAGTTGAGTACATCGATCATTTTGGACTAACC
GAATGAGGCCTTACCAATCTAATATATGTACTTCTACCTACGAAAGACTAACAAGAGTTG
AGTGATGCTATATTAATAATAATTGTGCTTCTCTAATACGCATATGCACGTTGACAGCTG
CACCACCAAGACAGGTGCGCATAGGACTGCCCAGGAGGCGCGCCCCTGCCACTAGTATAA
CTCCAAACTTACATGTTTACCTGTTATCATGTGGTATGTCGATATTCATTCATACTTTGG
TTATCTATAAGCTCCTACGTGCAATTTGCATGTGTACCTACCTAGTCAAAATAATCAGTT
ACCTTGTGAAAATCAGCAATGAAGCATCGGTTACCTTATCAAAATCATCAAAATCAGTTG
GATTCAGTGTCACTCTGTTCTCCATCATTGTTGTATTTAGCCAGCTGAAAAAGACAAGTT
AACTGTAAAATATAATTAAGAATATAATTTATTTCCAGTTTCCCATGTAAGATTTTGATG
TCATCAGATATATATCATATATAGAATTATAGATGTCGATTTCTGCAACTAAAGCAACAT
ACTTATGTAAAGGAACGATACATTATTAGAAGAAGAAAAAAAGGAGCTTACCAGTAGAAA
TCGCCTTGCCGATCATGAAACTGAATCTTAAAATCACCAGCTACCTCGGTTAATCCAGGC
TCCCCGGGCAACGCAAAAACCATAATTCCCTTCTTTGGTGCAGTAAACCAGAAATCTTCT
GGCTGAAAATGGGTTAAAAATTAAGTTTCCAAATGAAAGCAGAGTGAGACTTCCCACACA
TTTAGAGAATAGATCAAATATATAAATAATTAGAAACAGTTTCTCTAGGTCATAGTGAAA
TAAGAGTTTGGAATATCTTTTGATGTTTTTGGTACTTTGTTTTACGGAATGTCATGTTGT
GGGCCTTGGAGAAACACAAAGTCCCAATAAAGTACACTAGCCTTTGGTGAACCTGATTTG
AGAATCCTACAACAATAATGGGCAAGTTCCTGGTTTTCAGGCAGAAGGATCCTTTTGGTG
GAAATCCATTCTTGGTTTGGTAGATTGGTACAAAGCTATGGCAAGATGTCATGTTGGTGA
TGGAAAGAGAGTTCTCTTCTGGACAGATCTTTGGCAGCAAAGATGTTTACACCAGATGTT
CCCACATTTGTTCTCTTTCACCAAAAACCAGCTTATTTCTGTTGCAAATGCCCTGCAATT
TGAGCACATGGAGGACATGTTTCACCTTCCACTATCAATCCAGGCTTTTCAAGAATTTAA
TCAAATGGAAGCTACATGTGATACTTTGAGAGCATCTCCTGATACTGATTGCACAGGTAC
CTGGTCTTATATTTCCTACTTCTAAAGATTTGAGTTGGTGATGAGTTCACTCATCCATTC
AACCTCCTCCTACATGTGGGACCCATCAGATTAAAATAATGACAATCTCCACCTCACCAG
CTTCCTAAAGAAGAGAATAAAAAAAGCTTCCTAAAAAAAGCGTGGACCGCTCCTATTACC
CAATGACCATAAAGCAAGCCTGCTGTCCAATCGGAAGCGCTCCACCACCGCCATCCTCTT
ATGGATGGCAGCGAGCCAGCGACGACTGCTCCTCCTAATCAAAACCACATGTCAAGTTAC
CCAATCGTACCAAGCAGCCAAAAGCTCGCCGATGACTGAGCATGGTCGGGCTCAGCTTGG
TGCTACGGTGAGCGCCAACAAGAGGCTCGGACGGATCAACTCTCTAGCCCGAGCTGGCTC
GCCGGCGCCGGCGGCGCTGGTCAATGCTAGGTAGGCACGGAACGTGGTCATGGAGGCGGA
GCACTAGAGCATCCTGGAGGCGTGCTCATGGACATAGTCGTCAAGGAGAAGTACCACGAC
GGCGGTGCAGGTCGACAACGCGGAGCCGCGGACACCATGACCATGAGCAGGATAGGAGCT
TGGCGACCGTGCGTGCGTGCGCAGGGCGACAAGGGCATAGGTGGGAGGTGCGGTCTGCGG
CATGCGTGCATGCATGCGCTGGCGCGGAAGCGGCAGTGCTGAAGTACGTGTGCAGCCGCA
ATGCATGGCCGAGGAGCCGAGGAGAGGACGGCGTGGGGACAGCTCCGGAGGACTACGACG
ATTCTGTGGATTAGTTTGTGCGTGCAGTGTGCGTACGCTAGCGGTGGCACCGTGGATGGA
TGCAAGCGAGCGTACGTTTTTCTTTTGATGAGTGGTATGCGCGCTTACAATGTTGCTTAG
GTCAAGCTTCTCACATAATCGGGTTGTTTACTTAGCGAACCAAATTGGCTACTCTCACTT
AGATGGGTTTTGTGCTCTTCCCTAAACAAATTTGCTGTGTTCAGAAGAGAATTGGAGCTA
ACGAACCGGGACAAAAAAGTTACCGAATTTGAAAAAGTTTGTGAATTTGAATAAAGTTCA
CGCATTTCAACAAAAAATCATGAATATGGAAGAAGTTTGCAAATTTAAAAAAATGTTCAT
GAATTTGAAATAAGTTTGTGAATTTTAAAAATCTTCAGGAATTTGAAAAATGTTTGCAAA
GTTAAAAAAATCAAGAATTTGAAATCATTCTTTTGTGAAATTAAAAAAATGATAAAAGCA
TCCTAGAAAACCTCAGGAAAACCCTAATATAGAAAACCGAGGGTTCCCAAAATAGGTGGG
AGAACTAAAATGGGCCGGCCCAGCTACGTAACTAAGGGAAAAGCTACCAGCTACCGATAA
AGCAAGCGCCTTAAGTGTTGAATAGGAATTGGGTACTTAGATGACTCGACTTGCTCTTAT
CCCCCCGGCCCGAGCTGGAACGAGCCCAAGAGCCTGGTCGGACCGTCCAGCTTTGTCCAG
CTTTATCCCGAGGAAATCTAACAATAGAAGTGCAGGAGGAGTGTCGCCACTCTAGGCGAC
AACGACCAACGCGTCCTGGACGGGACTGCAGTGCTTCACGAAGTAGTTTCGTCTAGATGC
AGGATCGACGACATCGGGGAGACGTCAGTGTGTAGGCTCAACGACGCTGGAGAACAAAGG
CGATGTGTAGGCGGTGTCGAGCGCGAGCACCCGGGCTATGTAGTCATGCACATTGGCCTT
GGTTGTTGTCATCGATGCGATCACTTCATGGAAGTCACACTCAAGCTCCCTCCAGAGCTA
TGAAGACCGTTAGGGCGGCCTTCAACACGACCACGCTCCATGTATCAGAGGTTAGATAGT
AGATGCAAATGGGTCCTCCTCCAAAACAAATATCTGTAATCACTAAAACTTTGATTCATT
GACCCTTGGTGGTAGCATGTTGAACATATATCATACTCTCTCCCGCAAAAAATATATAGC
ATACACTTTCGATGGAAACTTTCATGTGTGGACTAATAATCTTTGGGTACCATCCAACGC
CTTGCATTAACGTGCTCTATCCTTCTTCCTCTATCCTTCTTCCTTTTTTTCATTGCATAT
TTTATCAATCTTCCAGTGCAACCTAGGGTGGCAAATGGTGTGAAATAATATGATAGGCAC
TAAATCTTTGAGATGTATTAAACCCCCGCTTATTATCTCATCTACCCGTCCTTAAGTTCT
TTTAACTATATTCAGACATCCCATTTCGTAGATTGCAGCTTGGCTTATGTTGATTCAAGT
CCGCTCACATATGTAAGCATGGCTTTAGAATGTAAGCATGGCTTTAGAATGTTGTCAATA
TGACGCATACCATTTTAAATGGGATATAGTAATATGTGGAGAAATCTCAAATGTTGATTC
GAACGCACTACAATTCTAAATTCCGCATTAGAAATATAGGACAAAGATAAAAATTATGAT
GTGATATGCTCATATGCAACAAGTAAACATATAATTAGTATTTTGGCCTACCTTGCAAAT
AAGAATAATGATGTGTATAGTAGCATCATTAGTAGAAATGTTTGTTAATAGATGTGATAA
GAAATGAAATAACTGGTTGTTTCTTTTGTTACTTTAGAAGGTCTTGACCAAATTTATTTG
AATAACCGAATCCGGCTAAATCTTGTTTTCATGTGGCTCCGTAGCGTAGCACGGGCATAT
AACTAGTATCTGGGGAAATTCCTGATTTTTTTTCGAGAAAAGGCAAAGAGTTGCGTTTCT
TTGTATTGAAAAGAAGGGGAATTACAGCCTCCTAAGAGGTGATTACAGCAGGTTACAAGG
AGTTTAATGGACATCCCAGGATGGGGGCAAGACTACCCTAAGCCCCTTGTCCCCGGCTCT
AGCCCAACACCTCATCTCATCTTTGATCCTATCCGAGAGCTCGGAGAGCGACGGAGGAAA
TTCCTGATTCTCTTCTACTAAAGCATACAAGGTCCTTCTGGGTACACAAGTTATTCCACC
CATTTTCAGTAGATTCGGAATAGCTCCTGTCAACCTAAGCACAAGGTCTTTTTCTGGATG
TTGCTGCATGACAGACTGAATACTAGGAATCTGCTAAGAAGGAAAACGTTTTACCTGCAA
TCATACCTTTGTGCTACTCTTAATTGTCAACTAGAAGAAACACTTCATCACCTTTTCTGG
AGCTGTCCTTTTGCTGCTGCTTGTTGGTATTTTGTGTGCCCCAACCGAAACCCCAACCTC
TCAATCCTTATGCTTTTGCTGACATCAAAGAGAAACTTAATGTGCCTTTCTTTATGGAAA
TCATCAATTCTTGCTTCATGGGGTATTTGGATCACCGGGAACAATTACATCTTCCAACAC
ATTCCTCCATCATTCCAAAGATGGAGAAGCACATACTTTGCAGAATTGGAATGGCTGAGA
TTCAGAATCAAGAGGAAATATGCTAACTTGTATAATGATTGGTTGGATACTCTTTCATTG
TAATTTCTCTCTGTTTTTTTTTCTTCTTTCTTCTTTCTTCTTTCTTCTTTCTTCCTTCTT
AGCATAGTGTAGTCTTTAGTTTTGGGCTTACCCCAAGCCTATCTGTAGCTACTTGGTTTC
TATGATTCATTAAATAGAAATTGCAGTGGGTACCCTACTGTTTATAGTCAAAAAAAAGTA
CATTAGCCTCATCAAGGACATGTACAATAATGTTGACAAGTGTTTGAACAAGCGATGGCG
ACATTGATGACTTCCCAATTAAGATAGGTCTGCACCAAGGGTCAGCTTTGAGCCCTTATC
TTTTTTGCTTTGATAGTGGATGAGGTCACAAGTGATATACAAGGAGATATCCCATGGTGA
ATGCTTTTTGCGGATGATGTGGTGCTAGTCAATGATAGTCGGATGGCGGTTAATAGAAAG
TTAGAGCTATGGAGACAAACCTTGGAATCGGAAGGTTTTAGGCTTATTAGAACTAAAATT
AAGTACATGGAGTGTGGTTTCAATACTACTAAGCACGAGGAGGAGGTTAGCCTTGATGGG
TAGGTGGTACCTCAGCCAAACACCTTTCGATATTTGGGGTCAATGCTGCAGAAGGATGGT
GATATCGAAGATGTGAGCCATCGGATCAAAGCCGGATGGATGAAGTGGCGCTAAGCTTCT
GGCGTTCTCTGTGCCAAGAGAGTGCCACGAAAGCTAAAAGGCAGGTTCTATAGGACGGCG
ATTCAACCTGCAATGTTGTATGGCGTTGAGTGTTGGCCGACTAAAAGGCGACATGTTCAA
CAGTTAGGTGTAGCGGAGGTGCGCATGTTGAGATGAATGTGTGGCCACACAAGAAAGGAT
CGGGTCCGGAATGATGATAAAGGGGATAGAGTTGGGTTAGCACTGACTGAAGTGAAGCTT
GTACAACATCGTCTCAGATGGTTTGGACATATTCAGTTCAGGCCTTCAGAAGCTCCAATG
CATAGCGGACAGCTAAAGCATGCTGATAATGTCAAGAGAGGTCGGGGTAGACCAAGCTTG
ACATGGAAGGAGTCTGTAAAAGTGATCTGAAGGGCTGGAATATCACCAAAGAACTATCCA
TGGACAGGAGTGCGTGGAAGTTAGTTATCGACGTGCCAAAACCATGAATTGGTTTCGAGA
TCTTATTCATGGATTTCGGCTCTAACCTACCCTAACTTTTTGGGACTAAAGGCTTTGTTG
TTCTTGGTGGTGGTACTTTGTTTTACGGAAACAACAAAACTGGAAACCTACTAAATTATG
CTAAATAAAGCCTGAAACAAAGAAAAAGGAAAAGAAAAGAGAGAACAAAGTAGGCTGCTC
AAGTAGCAACCACACAAATTCCAGATGAACTTTCTTTATAGCATTGTTCTTGTGTTTAGT
TTCACTAATTCAAAATCCATAGTAACACACAAGATACATAAGGTAGAGGCCAACATATCT
AGATTACAAAAGTATTATGCTCTTTTAATCATAAGAGGTCCTGAATAAGATAGAAAATAA
TAATTAGTCAATCTGAATTTGACACAATTTCTGATGCTAGTTGGACTAAAGTCTACAAGG
ATATGAAATGGTTGGCCTGGGTTCAAAGCCTGAAGTGTTTCTCTCTAGTAAAATATAGTA
TTCTGCTTTGAGGCATCCTCACACCGACATAATCCTTTTCTATTGCATGCATTGCAGAAC
TGGAGAGCAATGCTGACATAAAATTGAACCTAAAAAAAGGTTTTTTGTTATCTATAGGAC
GGCAGTTCGACCCACAATGTTGTATGGCGTTGAGTGTTGGCCGACTAAAAGACGACATGT
GCAGCAGTTAGGTGTGACGGAGATGCGCATGTTGAGATGGA