morexGenes - Barley RNA-seq Database

Contig contig_56899
Source Contig contig_56899
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56899 (7362 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
Predicted Genes from contig_56899

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69749	1	1512 bp	None	Available	Available	None
MLOC_69748	1	2752 bp	MLOC_69748.1	Available	Available	LOC_Os02g07030.3, FRAME:+2, EVALUE:1e-78, 13102.m12366 protein DUF640 domain containing protein, putative, expressed
CDS Structure of MLOC_69749

CDS Structure of MLOC_69748

Contig Sequence (7362 bp)

>contig_56899 7362 assembly3_WGSMorex_rbca.fasta
ATAACTAACTTATTATTGCCTCTAGGACATATTCCAACAAGACAGGGGCGGCAGGACGCA
TTGGTATTTTATACACACCCGCTGTAGTTACGACGAAAACATTGACAAAATGATAGTAGC
GTAGGTTTTGCACCCTGCGCTACTACTACAACATGTTCGGGTGGTCCACTTATTTGTAGT
GCGGGTCTTATACCCCGCTCTACTACTATTAACTTAGTAGCAGCGCGGTATTTATATTCG
GTGCTACTACTATGGCCGATCTCGGGGGTATGATAGGAATCATTTAGTAGTAGCGGGGGA
TTTATACCCCGCGCTACTAGTATCAACTTCGTAGTAGCATGCATGGGGTTTATACCCTCG
CTACTACTAATTAGCAGCAACGCGGGTAGATAACCCGCGCCACTACTAAGCTTCTATATA
GTTTTTTTTCTAGTAGTGTCATGTGGTTCCATGCTAGGACTGTAGTATTTGTATCGCGGA
AGATATGCCGGATTTTTTTGCTATGGGACGACTAGTTAAAAAAAATCCCACCTCCTTCTA
GTCGTCAACTTCTGCTGCAGTATGCGTTGTGGCGACCCCGGCCATGAGTTCCCACGGATC
CAGCTGCCCCAGGCGACTACTGCTGGACCCCTTACACAACGATCTCAACACAAAGGCGCG
AGGAGCCCCCGAGCGCGGCGGCAGTCGTTGGATCCAGTCCTCCCCCGAGCGTGGCGCCCC
TCCCCCAAGCACCGCGGATCCAGCCTGACAGCAACGGCTGGATCCAGCATGACAATAGCG
GGATCCATCATCACAGCGGCGGGACCCCCTACTCTTTCTATCTCTCGAGGAAAAAAGGGC
ATACCACGGCCCGAATACAATGGTGGGCACGACAACGTCCTTGTGATGGTGGCGCGTCTC
TTCATGGTCTCGACGGGGAAGAAATACCTTGTCATTGGTTGGGCTTCCGACGACGCCTTT
ACATCGTTCACCCATGGACGTTGTCAAGTTTGATTTGGATGATGTGAAAATTTGCATGTC
CATCCACACGAGCAGTTCGGCGCTAGTTTTTGGATCATATCGTGTAAAATGGATATACAC
GTAACATGTTATTGGAGATGCTCTCAACCCACCTAACCTCATTAGTGATATATTTGGTTA
CTTTCACGGTGGAGCCTGGCTCGATGGAGCCTATTTCATCGTATACACGTTCTGAGTCAT
CATTTTTATGTCGTTTGGTAGGCAGCATCAAGTTCAGCTTGTATCTTTCGCGTCGTGTAA
ATTACACTAGACAGAGCATGCATTTAAGTAAACGGCCGATCTGAACTTTCCCGCGGGCTA
CCGTAAAAATGCTTTCAAAACATCTTCAATAGATTGTTTAAAGGTAAAAATATTTAACTT
TTGAATTGTCTGGGATAAAAAAACGTTGTTTCAACATACGGTCTATATGTAAAATATTTG
GACCAAGACCTTTCGATGATGTAAAAATGAAAAACTTCGTGATGTAAATTTACATCAGGA
GATACAAATGATGTAGAAAAAACGTGGCCGCGGCAAGACCCAACCACCAGTTCATTCGTC
TTCCGCATCACGACCGCCCGCCCGCGACCCGCCCATCCGCCTTCCGTCGCCGCCATGGCC
GAAGCCGACGACCCCGCCGCCTTCTCCACCGCCGTTGCAGTCATTTTGAACCATCTATTG
AAGATGTTTTTTTTGACATCTTCATTTATCTTCATTTTGGATCATCTGATAGAGTTGAGT
CGTTTTGAAAATGTAAAAAACATTTTTTGGTATTTCAAATTTGAGTCATCACTTGTTTAG
ATCGTGAAAATTTGAGCCATGTATTGGAGATAGTCTTATTAAGTTTCACAAGAATCAGTT
TCTGCGTACACGCTGAGTACTTTCGCTAGAGCCAAACACTTCCCACGTCGACGACCAGAT
CAGGGATCGAATACAGAGTTTCAAACAAAAAAAAATCATCGAACATAGAAGGAACGACTC
TGCCTCGCGCGCGCGCCTTGAATAGACAAATATGGCCTCCCCCTCAGCCGCATTTGTTTC
TCTCCTGTCCTGTGGAATCCATCATCTTGACATGACATCTCCATACCTCCCCCTCCACCG
CATTCAATGCGAAGACAAGCTGCCTCTGGGCATAGGTGTACCTAGCTATGGCCATGGAGG
ACAGGGGATGAGAGAGAGAGTAGATCGACGACGATGATATGAGAGAGAAGGTGAAGTGAC
AACTGAGGTGACGACCTTTTCTGCAATGCGGAAAGAATCGACATCCTCTCTCTTCCCCCT
GCCCCACCAGGTTTGATATCCGCGCTCCCTGGGACCCGCCCCCTTGTCTCCCTTCCTCCT
TTACATAGACCCTATCTTCTTCTTCTAGCTCTTGGCCTCCTCCTCCTCGCTCCCCTCCTC
TCGCCTCCTCTCCTCACGAGCAGCTCACTCAACTCCATCGTGCCGGCTGCTCGAGCAGCT
GGCGTTCCTCTTTGCTTGCCTTCTTGGTCGTCGTCTCCCACTTTCGTCGTCTTCTTGGTG
AGTGCGTACGTTTTCTGCTTCCTCGGGTTGCAGATTTGCGCGCGCTTTCCTCTCGATCTT
GACCCATCCTCTTTGATTTTGCACCGTTGGTGTGTTTGTTTGATTGATTATTTGCCATGA
ACTGTTGCGTCTTCGCATGCGATAATCAAATCTAGGGCATGCATGCATGAGCATGACTGA
AAATTCTTTCAATTTGGGAATCCGGAACCAAGAAGCGTTATTTAATCATGCACTATCCTC
CCCCCAGATCGATTTAGTTTATTCATCTTCATCATCGCGGACTAGTTTTTCTGGGTGTGA
TGAATATATCCTCACTGTGCCAAGAAAGAAAGAAATAGGCGTGTCCTCATCTGTACTGGT
AGTACTAACGCTAGCTAGGGTTCCATTAATTCCATCCATCCGTGCGCGAGTTGACCGGTC
AGGGCTTCTCAATTAAGTAATCTCACCAATCCATTGCCATCACTGTGCGTCTGTGGAGGT
AGCTAGCCTCAGAGTTCTTGCTATATCCTGCAGCGTGTTTCTGTTTTTTGCCATGTCCCG
TGTTGTTTTTTACCCCTTCTGCATGTCTCAGGTTGTGTCAGCTCGTTGCATCATTGCATG
GCTGCCAAAGCTCAGCTCAGCTCAGCGGAGATCATATGTTTGAGTAACACTGGTACTCAT
GCTAGTTAGGTGTCAGCTAACCTGAAACCCTAGTTCTCGCTGAATACTGATCTGCCATAG
CTAGGATTGGATTGGAGGGAGATGGTTCGCTAACAAGTTTAAGAAACCGACGAGCTCGTG
ACAGTACACTGTGACACTATAAGCCATAGCTATAGACATATTTATTGCAGTCGTTTGACC
AGCCTGCACTTTTACAATATTGGCATTTCATCGGTGCAGATCTGAGCTGAGAAGCGGCGA
GGAGGCAAGCCGGCCGGCCGGCGGCGATGGACATGTCTGGCGTGAGCGCGGTGGACAGCC
CGGGAGGCGGCAGCGCATCGTCGGCGGTGGCAGCGCCGCGGCCGAGCAGGTACGAGTCGC
AGAAGCGGCGGGACTGGCAGACGTTCGGGCAGTACCTACGGAACCACCGCCCCCCGCTGG
AGCTGGCGCGGTGCAGCGGCGCGCACGTGCTGGAGTTCCTCCGGTACCTGGACCAGTTCG
GCAAGACCAAGGTGCACGCCGCGGGGTGCCCCTTTTTCGGCCACCCCTCGCCGCCGGCGC
CGTGCCCATGCCCGCTGAAGCAGGCATGGGGTTCCCTGGACGCTCTCGTGGGCCGCCTCC
GCGCCGCCTGTGAGGAGAATGGCGGCCGCCCGGAGGCCAACCCGTTCGGGGCGCGCGCCG
TGAGGCTCTACCTCCGCGACGTCCGCGACGGCCAGGCCAAGGCGCGCGGCATCGCCTACG
AGAAGAAGCGCCGGAAGAGGCACCCCCAGACGTCGTCGAAGCAGAAGCAGCAGGCGGCGG
CCGCCGCCGCCGCGGCGAACCCGGCGCCCGTGGACAGGCCCGACATGCGGCATGACATGC
TGGAGCAGACGCACTACCTGTTCCCCATGCACGCGCACCTTTTCCAGGGACACTTTTTGG
CGCCGGCGCCGGACGGCGACCCCGTGGGTGCCCTGGACGGCGTAGTCCCCGCCCCCGGGG
ATGACATCGTGATGGTGATGGCGGCAGCCGCCGCCGCCGCCGAGGCGCACGCTGCCGGGT
GCATGATGCCGCTGTCCGTGTTCCATTAGCTAGCTCGACGTAGAGAATTAAGTAAGTAGG
CCTAAGTAAGTCGAGCGTGCATGTTAATTCTGGCAATGGCGATGCCTCGGCTTGGTCGTC
ACGCCATTTGAACACAGCCCTAGGTTTGCACGCAGTGCGCGCCAATTCTCCCAGAGTAAT
CCACTACTACTACTAGCTCTTCTGGTGAATTTACGTTCCATCGTTTCAAAGGTAGTTGAT
CATGATTATCGGTAATCTGCATGGTCGGGTAGTACGTGAAGTCGCATAAGTTGGCAGGTT
TGAAATGTTGGTTTAATGAAACGCTCAGCCAATCAAGTGGTATGTTTGTGTTACTCGATT
GCATTGTTGACGAGCACATAATGTTTCTCTAATTACAAAGTGTCTAATTTAGTTCATGTA
GTCATTTGTTTTTCTTGTCCACTAAGAAATATAATAATAAATCATGAATATAAATGTGGG
GACATCAAATCTAGTATATCAAATACTCCCTTCATTTCTAAATATACCTCTTTTTAAAGG
TTTAGAAGAATACTAAAGTATAAATTCACTCATTTTATCTTTTAAAGTATAAATTCACTT
ATTTTACTTCCTACGCAGTCTCCCCTAATGTTACTATCGTGTGCTGGCGATGCTTTTGAC
CGCACGCCTAGCCCAAAGCTCAGGTCAACTCCAATGCATGACCCGATCTGGGCTGGCGTC
GTCCGTTTGAGGTAAAGGTAAAACGGACAAACCTTACGGATGCGTCTTGTCCGTTTTATG
TTCGAACTGACAGGGAGCAGACGTGCTTTCGTCCGCGTCGGGGGCGCGTGGCAGTCTCCC
ACCGGCCGTATTTACTGCACACGTCCGGTAGGCCCCGCCTTTCATCCACTCAGACGGGCG
GTCGCCGTCCTTCTTTAAATGAGGAAGCCATGGACCGGCACAGCGCACGCGTTCACTCCA
CTGCCTTCTCGGGACCGACACCAAACCCTAGCTTCCTTCTCCCTCCCTGGAGCTCTTCGG
CCGCCGGCAGCAATGGGGTGGTGGAGCACCGGCAGCAAGGGGAAAGGGTCGCACGACCAT
GAGGCTGGGTTCTCGTACGGCCGCCGCCGCGCCGCAAGCGAGTCACGCCGTTCTCCTCCT
CCGCCACGACCTGCTCCGGCAGCCTTCGCCATTGCCCCTTCGTCTGCGCCGACATGCTCC
CGGCAGTACGTCCATGCAGATGTGTGACGCCTATATTGAGAGACAAGGACGCCGCTCCCC
TGGAGCGACGTCCACTTGCCGAACAACTGACACCTGTCAGCCGATCGGGTGTCGATCTTG
TCGGTGCCAACGAGCAGCAGTGCCCGCCGCGACGAGATCCAACGTCGCCTCCTCGACGAC
CTCTACTACGACCCGAGGTACACCGTGGAATCATCCCTATGGGATACTTGGTTCCGTAAT
GAGCACGACGTGTTGCGCGCGTCCTATTTTGCCGGCGAACACAACAACCCACGACGGACA
CGTGCAGAGCGTCGGGCGCGCCCTCCGAGCCCTCCCCACGTATGCGGGTGCGCGGCCTAA
CGCCGACCCCGTCGTCGTCGCCCTCTCCGTCGTCCCCCACCTCCTAGCTTATCAAAGAGG
AGGAGGCCCGGCTCGTCCAGCGTGTCATGAAAGATTCCATGAACACGTACGACGAGCGCC
AGTGGGTGGGGCTGAAGGAGATGATGACCCTCTCCGCGGTCGGCAATGTGGCCATCCGGA
GGAGCAGCCCGTAGCGGTGGAGGAGGTGCACGAGGAGCAATCAGTGGCCGCGTTCACCCC
GGAGCTGGTGGGGCAGCGCTGGTCGTGGCCGTGCACGGCCACGAAGATGGCCAGGGAGTG
GGGGGCGGGCCTTGCTGCCCTACCCTGCCGCGGTCATCGGAGGGCGAGTCATCGTCGCGC
GGGGAGGTGTTGCAGGGGCCGCCAGCACCGCTAACCTTCCAGGGGCCACCGCCCCACCTA
GGGACGATGTCGCCGTACATCGACCTCATTAGCGACGATGATGACAACGACAGCGCGCGA
AGACGCCGACGGACATGGCAGCAGCACGGGACAGCACGGGACAGCGCATTTTATTTGTTT
TTTTAAACTATGTTAATTAAGGACTATGGGCCGTGGGGGCGTTGAACAATAATTTTATTA
ATGTATAGTTATTAACGTTTGCGTTTTATTTACATTTTTCTGGGTTTTTTTATTCTAATT
TTATTAAATGTCGAAGGATTTGGGATGCTACCGCGTGTTGGACGCACCGATCCAATCACG
GATCGATCCGAACATGAGCAATTTCATTATCCTCTCAAACGGACATAATTTGGACCAAAC
GGATGTTCAGAGCTGGTGGAGTTGGCTCGTGCACCTGTCCGATCGATCTAGAACCTAGAA
GTATATGAAGTACACGCTTGCATCTTTTGTACACTGGTTGTGGCGGCCATTTCCCCCAAT
ATCACAGCAACGTACGTCAGATTTCAGTACTACTAGCAATCAACGATCCATTCTCCAGCG
CACTGTAGCCAATTCAAGAAGCTCATCACTGCCCACCCATCGATCGCGCTCACCTTCGTA
CTGGTTAAAGGGATAATGAAAGTTATTTTGACGGAGACCAAAAGATAGACGTGCCGTGCA
AATGCAGCAGCTGGGCCGGTAGCTAGCCATTCCTACCACCTCAGTGCGTGCGTGTGGTTC
GTGCTACTCGCCTTCCTTCCTGGAACTTGCACAGTGATATCGATATGCTGATGGCATGTC
CTCGATGCAGCGTATGATCTTCAGGCGGTACAGATTAATGGAATGGTGGCCGACTTGATT
GCCATAATGCCATGCATACTGGGAGTGGATGTGACTCGTGCATGTACTGCTGCTGCGACT
AGGTTTCCCCTGATTTGGCAGTGCGCTGCAGCTTATGCTGGGCGGCTAGACCTGCACGGC
TGGACCAGTCAAGCGTTTCACAGGGCCTGTCCTGGATTGGTCCATCAAGGACTTGACAAG
ACCGCTTGGAGCTTGCGTGTCTCTCTAGTCAAAATTGACAAAAATGATCCTCGGGGAAAA
GAACTCATGGAGTGACCCTTCAGGGAAAATATGTCACCCGGCTAACCCTTTTGTGTGACG
CCCGACACCTAGGCGCCACACTACACTGTGTGACGCCTAGCC