morexGenes - Barley RNA-seq Database

Contig contig_56852
Source Contig contig_56852
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56852 (10411 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location		No map location
Predicted Genes from contig_56852

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69715	5	4314 bp	MLOC_69715.4	Available	Available	LOC_Os01g63910.2, FRAME:-3, EVALUE:0.0, 13101.m06862 protein AT hook motif family protein, expressed
MLOC_69706	1	757 bp	MLOC_69706.1	Available	Available	None
MLOC_69707	1	2192 bp	MLOC_69707.1	Available	Available	LOC_Os07g04150.1, FRAME:-3, EVALUE:0.0, 13107.m00352 protein stress-induced protein, putative, expressed
CDS Structure of MLOC_69715

CDS Structure of MLOC_69706

CDS Structure of MLOC_69707

Contig Sequence (10411 bp)

>contig_56852 10411 assembly3_WGSMorex_rbca.fasta
GGAGCAACAAGCAACACTGACAAAACACAGTTAACATGATGCCATGCATGATGCCATNNN
NCAAACTAAATGACGATGCAACAAATATAAATAACACACGACGGAAACGAAATAGAATGG
GAAATCTTCTGGAACGTCAGCATCGGGCTGTCACATATCTGCAGACATTTATCTTTCATT
TGTCGTGCGCCATACATTGCTAACATGTATGTTTAATTGCAGTTGGGCCAGGCACCAACG
AGGACAAAATACACATCTTCATTGTGCGGATTTGTGTGGAGCCTCTTTGTGTGGATGTGG
GAGTGGTTGCCGGTTGGACGGCTCGTGTTAAAGAACCCCAATAAGCCAAACCCCAATCCG
CATGAAGGGCTTCATGATCAAAATCCATATCCTCGCCCCCACAATTGCCTATCATTGGGA
TCAGGTGTCTGTTTACACTGGAAGCTCTCATGTGCAATACAAGTGCTATGTGAATGAGCT
GGACACCTTAACTGCTGAGCAGGTACCAACATTTCAGTTCCTTATATTGTAGGTTTTCTG
GCGGCCATATGAGAATGTGTACCTAACATCTCATCTCATCCTATTGTAGGTTTTTTGGCA
TCCTTATGATGATGATCATGAGTTCAACCTCAACCAGATGTGCACGCGTGATAATCATAT
TTGGAGGTCTAGGTGTCCAATGATATTCTTTTACATTGTCAAGTATCACTTTGTAGACCG
TGTTGCAAGGCAATTTGGGAAATGACAAGGTATTCCAATTGAGGAGAGCAAGGAGAAAAT
CACGATGTTGCATCGGTGAGCAAAAATGTGTACGAGATTTCTACTACAACATTGTGAAAG
TCTATGTTTGCTAATGGTTTAAAATGTGCATCATTTGTAGGTTCAGTCGAAGGAACAATC
ATGATACATCGGAGGGCGAACAAACACCATAACTGGATAGCATTGTGGAATCAGAAGGAG
AAGTTAGTGGAGTCAGAGAATAGACCCCACAATGACTCATCCTACCAGAAATATCTTGTG
TGGTATGGGCAACATTACCTGTTGAAGCTTAAGCCCGGTTGGACTAAGGAGGAGTGGTCT
GAGTTGGTGTCGAAAGATCGATCAACTGCAGAAGGTTATCATGACTTCAACATGGTTGTG
TGAGAGACCGGAGGGAGTCAAGTTAACTACGCACCCATGCATGATGAATTGGTAATTGAA
TAAACCAGAACCAACTTGCATTACCTTGTCTTGTTCAAATATTAACATTTGTTGTGTTAA
TGAATTGCAGGACAGAGAGTTCCTTATGTGCGTGAATGATGTCAATGTAGCACTAAGTCA
TCCCTCGGGAAGTGGATTATCTGAGGGAACTCTTAGGACCATAGTGCATGTATGACCATG
TTTACAAATGCTTGTCTTAATGGATTAGTTATTTGCATCTGACATATTGTGTTGTATTGT
CGCGGAAGTTTAAGACAAGGTTCCACAAGTGGGAAGCTATGCTTTCTTGCCATGGTCATC
AGTCCGTGGACGTGTTTACAGTTGGTACTAGCCTCTCCTCCAGAGCTAGACGTTGTCATC
TCACCATTGATGATACAGAAGAAGAGGAACAAATACAACAGGAGCAGGCATAGGAGAATG
AGATAGATATTGATGCTCCACAGCCGTCACAGCCGGCGACGAAGAAGAAAGGCAAAGATA
AGACACCACGTGCGCCGAGAAAGAAGAAATTTAATGCTCGTTATTGTAGTCCGGAGTATC
CTCATAAGCTCTTGCCTAAGGCTATGGGTAGAGAGGAATCTAGCAAAGAAAAGGAGGAGA
AGTCTACCGAAGAAGAGGAGGAAGAGGAGGAGTCTAGCGAAGAAGAGGAGGAAGAGGAGG
AGTCTAGCGAAGAAGAGGAGGAGCAAGTGCCTACGAGAAAGGGGAAAGCCACGAAGAGAG
GAAGAAGGAAGTGAGCATGAAAGCTCCTTCGTAGTCGTGAAATGAATTTGTCGTGTAGTG
AACTTCTTGTGTTATCTTGAAAGGTCCTTCGTAGTTGTCCTGAAGTGCACTTGATATGTT
AATTTTAATTTGTGAACCTGTCGTGAAGTGAACTTCTTATGTTATCTTGAATTTGTGAAC
TTGTCGTGAATTGAAGTGAAGTGCACTTGATATGTTCTATTTAATTTGTGAACTTGTCGT
GAAGTGAAGTGAAGTGCACTTGGTATGTTATATTTAATTTGTGAACTTGTCGTGAAGTGA
AGTGCACCTTCCTCTTCTTTCTATGTCATAAAATGATCTGCACGGAGTTCAAACAATAGA
ACATCATAGAGATTACATAGTTCAATATGACATACAACACCAATATCTTCACACAGTTCA
AATGATAAAGATTACATAGTTGAAATGAGAACAAGTTATGCAAATGGGTACATGTCATTG
TAGTTCCAAATGACAAATATTACATAGGCCCATGGTAATGAACATACATTTTATTTGGCA
TAAGGTCCCGAATTGCAGCAAAGAACATCATTTCTTTCTTTGACCCATGCCCAACGAGAT
GCATGCTTCGGTTTCGACGAAAAAGGTTGCCTCAGTAACCAATCAATGACCTGGCCATGG
TTTTTCATGTTAAACTGCTCATGTTCTTCCCTTGTTGCACAAAATGCAACTTACATTGCA
AGATCACGCCTACAATCTTTTTCCGTCTTTTTGAGCTTGGTGATCTCCCTCTCTTTTTTG
TCGATTAATTTTTGCGTAGCGTCCTTACAAAAATAGTAGTTTGAAAAGGCTTTACATGCC
GCGTTCAACGCATCAACGGCTGCCACCCAGCGGTTCATCTTTTCCTCAATAAATTGCATT
CACGCTTCGCCGCCGCCTCAAAAGAACCTCAACATAAATGAACAGTCTCATCCTGTATTT
CAATAAATTCTACTCATAAAATAAATAAATCAAATATATTACCAAGGATGGGCTAGGGTT
TCTCTAAGATGTAAAAAAAATCTAAGATGTAAAAAATCTAGCATAATAAGAAGACTTAAC
AAAAAAAATTGGATGATTCAGGAGAGATTACTGCAAGCAACAAAGTTATGGAAAGATCCA
TGTAAGGGAAGCACCTTTTGGAGAGGATTCGATGGAGGCCTTGAGGGGTAGGGGAGGGGA
TTTGGAGAGGCAACAAAGAACAAAGTGATGGAAAGATCCACGAAGGGAACCACCTTTTGA
AGAGGATTTGAGGGGTTGGAGAGAGGGGAAGAGGAGAGTGAGAGGAGAAAGCTCGAGCGG
GAATGGGGTGGGTCTCATCCACTCTCTCGTGGGATGTGTAAGTTACCCGGACCAGACGTC
AGAGTGCGCGGCATATGGGTCTAGCGACGAGACGTCGGGGTCCCTGACGTCTGGCCCTTT
GCCACGCCAGCCGGTCAACAAGGGAGGAGGGGTCGAGCGGGCCCGTATCAGGCATCATGG
TACTTGGCGTCTCCAATGCAATTCAGACGTCAGGAATGTTAGATTCGATTTTTTTTTTAA
ACTGAGGTTAGATCTGGATTTGTTAGCCTCAAAGATTTTTAAAAAAATGTCCAGCCATGC
ACACAGCAAGTGTTGAATGGCAAAGAAGTGGACGAAACCTGGTACCAAGACATCCCATGT
GCACTTGCAAGGCGCCACACTGCAGGCGTTGCCCCCTCCCTCCTCTTTCCCAGCTGGGAG
GAATGCCGCCACGTCCCGCCAACCGCCTGCATCGCAAAAGTAGTACTACCAGCTATACAA
CTCATCACACAACTACAGTACAAAAGAAGTTCTTCATTCTGCAATGGGTTTTATGACCAC
ATCTGTTCTACACCCCTTCATCATGGCAAAAAGAAACTTGAAACTGGATGGACGATCGGG
ACGGGAACACGCACACAACACGAACTCTTTCCTACGGCTGATTGATGATTTTCTTCTATA
GATAGAACTTTAAAAGGCAGCTACTAGAAGGCTAAAAACTACTGCCAGTGACGGATTTTA
AAACAAGAACACGCCTCACCAAAAATCACGAGAAGTGATCCCAAAGAACAGTTTGATCTC
TCACGGACAAAAACAAGAACAAGAGACCAGAACCACCGCCATCAACTCCCTCGATCTCGC
CACTACCGCTGTACAATTTGTGGTGGCATGCGATGCCAAATCTCTTGGCCTTTGGCGCTC
GGTGGGTCTCCTCACCGCAGTGGGTCGGAGCGGGTGCTGGAGAGCTCCCTGCGGAGGCGG
TGCGAGAAGAGCCTGCACGCGTCCATGCTCAGGTCCACGGCTGCCGCCAGCGCCACGAAC
GCCGCCGCGTCCTCCGCGCAGCCGACGTGCGGCACCCCCACCTCCACCGTTGGCCGGCTG
CACCGCCCTTCGCCCTGCACTGCCGCCGACATCACGAACCCGCGGTAGCTCCCGAAGGGC
CAAAGCCCGTACCCGCCGCTGAAGTCACCGCTCCCGCGCGGGCTGCACCCAGGCGACCCG
CTCCGCCCGAAGGGCTGCGCCGCCGTCAGGTCAATCACGAAGCGCCCGCCGCGGGAGGTA
GGGACGTTGGACTCGGCGACAGAGACGCCGACGCCCATTCCGGTGGGGTCAGGAATCAGG
AGCTCGAACCGGTACCCGAGGCTGTCGCCGGCCGCGCCAGCGCCGCGCTCGCGCCAGCAT
TCCAGGCGGCCCCACGGCTTCCAAGTGCCGTCGCCGGGCCGGAGTACAAGCCACGCACCC
GGGTTGGACCGGCTCACGCGGTCGGAACCGGGGGACGCCACAAACGGCGTGACCATGGAC
GCCAGTGCCACTGGCGAACCGGACAGGTCGTGCACCGTCACCGACCATCCCTTCCGCTCC
TTCCCTGCGCGCTCGCGGTCGGAACCAAACGACATCAGCCAGTTGCGGCCGCCACTCCCT
GGATCGGAGTGCATTGATCTGGAATACCGAAAATTTGACGAATTCCGTCAACATTTGTTT
GGGAATTCAAGTTGAATTGTTGAGCATGACGACGAGGACTCACCGAGAGCGGAGGTCGCT
GTTGCTGCGACAGGAGAACTTGCAGGTGAACATGGGCTGCATCATACCGCCCTGCACCTG
GAGCACTTGCGGGCTGCACTCGGGCTCGCCGTCGAACTGGAACACGAAGCGCGGGTCGGG
CTCGGCGCGAACGGTGAGGTTGAGCTGCGCGGAGCCGGAGACGGCAGAGGCCTTACGGCC
GCGCTTGTTGATGGGGACCCAACCGCTGTGGAACACGATGGGCTTCCCCACCGCGGTCTT
TAGGTCCAGCGGGATGACCACCTTCCCGAGCAGCCGGCCGGAGTTGACCCCGCAAGTGGT
GCCCCGCCGCCCGGCGTACACGGCAACCTTCAGCCTCGCGGATCGGGCGACGAACAGGGA
CGGCTTGGCCGTGACGCGGTCGAGGTCGGCCTTGGAAAGGTGGAACGCGGCTGCCAGTGC
GCCCGTCGCGGCGGGACCCTGCGTCATGTCGTCCGAGGGCAGCAGCGGGGCCGCGGCACT
CTGAAGCGGCAGCTTGTTGAGCCGGATCGTGCAGTAGCACGGCGACGTGGTGGGGTGTAC
GCCGGCGCCGGCGCCGGCGGGGCGCGGGGCGACCGGCATTTTGAGGGCCAGGTTGCCGAC
CAGCACCCGTACGAACGGGCACGGGTCCATCTCAAGGCCCTGCTTCCACTTTCACTGCGA
CCACCTCGTCCTTGTTATCTTCTTCTTCTTCTTCTTGGCCGTGGCTAGCCTCTGTATCCT
CCTTCTGTTTCTTGGCAATGGCGATGGCGGAGCAAGAAAAGGTTGATGTTCTGGAGAGAC
GATGCGGAAGGTGTGGTGACGAGGGATAATAGGGTATAAAGGCCGGCTTTGGGTGTAGCC
AGCCTGGATCCCCTTAGCTGTGACCGGGGCGGGGCCTCCTATTCCAACCCACCCACCTCG
CGTAACACCTACCTACACATACACATGGGTCCGAGCATACCTGGTCCACCAGTCATCGGC
TTAAAAAAACATCTAAAGGCGGTGTCAGTGGAAAAGCGGCCTCCGCGGAGGTGTCACACG
CGAACTGCGGCCGCACTAGATCCCGCCATGCGGAGCTCTCCCCTGCACTCTAGCGCTAGC
GACTTTTCCCCACACCCAGAAGCAAACGTTCCCCTGTTTTCTGTTCTTTTTATACGCAAA
GTAGTACTCCCTCCCTTCCTAGATACTTCCTTCGTTCCAAATTTTTTGTCTTTATATCTA
AATACTAAAACTTAATTAGATACATTCATGTATAAACAAATATAAGACAATAATTTTAAG
ACTGAGGGAGTATAAGTCTTTTAAGAGATTTCATTAAAAAAACATACGGATATATATAAA
CATACTTTAGTGTATAGATTTATTCATTTTGCTCTGTACGTAGTCCCTTAGTGAAATCTC
TAAAAAGATTTATATTTAGGAACGAAGGGAGTAATATACTACTCTGTATTAGTTTACGGA
AGGAATATTATATAATTAGGACGCTGTTAGCATCCAGATAATTTCAATCATCCGTCTGCA
CAGCACTCCAATCCTTCCCTCACGGCCATTGAATTGACAGTGAAACAACAAAACACGAGT
CGTTTCACAAGCAACGCCACACTTCGCAAGCAGGATCCGCAATCCCTCGTCGACGGGATT
GGGCGTTCGACAACAACAACAGCACGGAAATGCTTCACTGCAGTCGCCGACATCGGCGAG
GCGGCCCTCCAACGGAGCACCGGCGGCCCATCGCAGCTTCGACCATGCTTCATTGTAGCC
ATGACACCGGCATGCCGTCCTGCAATGTAGCGTCGATGACCCGTCGCACCTCCGACCATG
CTTCATTGCAGCCACGACACCGGCACGAGGTACTCCAACGCAACATTGGCGACCCGTCAC
ACCTCCGGCCATGCTTCATTGTAGCCCCTACACCGACACGCGGTGCTCCATTGCAGCGTC
GGCGAGCCGTTGCAGCTCCAGCATGCAGCAACGCAACTCCGCCGCTTTGGTGTGCATCAC
CACGTTGGTTCATTGTAGCTCATTCGCATCCCCACGCAACACCACGTTGTTGCACTACAG
CTCCGCCGCCACATCGTCGTGTTCCACGTCTGTTGTGCTACAACTCAGTCGCTTGCAGCT
TCGTCATCCGCCGAGACCTGGGAGGGCGCCACATCTCGTGCGTTGTGTGGGAGCAACCCA
GTTGCGGACGAGATCCAACGCTTGCAGCACTCCTCTCTCAGCAACACCTACACATTGCAA
ACACCGGCCACGGTGAAGCAACGTTGCTGCCCGGCGGAGCTTGGTGTTGTGCAGCAATGT
GGGAGATCCCCCCCTCTCCCATAGATTGCAGCTAGGGAGGATCAGGTACGAGCCATATTA
GATAGCATGGTTAGCGGCGGTGGCTCACACCAGCTGCAGGCGACTATGTCCATGGCGGAT
GCGTAGCAGTGTGTGGGAGGAGAGCGGGTAGGTTGCAAAGAGAGGTGAAGGGAAAATAAG
TAAGAAGATGAGCGGCGAGAACGGCTCGGGAAAACATAAGGAAATGTGGAAGAGTGCTGG
ATCGGTCTCATGGAAACACATGTTAAGCGGGGGAGACAATTTATGAAATAGAGAAATCAG
CCGTTTGGTTTTAAACAATTTTCATATAATTAACGTTACACTGGGTTTACTTTAAGTTTG
CCCACATAGCAAGGAAAATCCCGTGTGAAATGGTCGCACACATCATTCTCACATGTTTGC
TTGAGGCGGGTCTAAAAGAGAACCAAGCATTCACTTAGTCGCTACTGCTATCTTGTAGCA
GTAGCGCTGGTTGGCACGCGCTATTGCTATCCTTATGTAGGAATAGCATGTGTTTATCCA
GCGCTACTGAAAACTGGGTTAGTAGCGGCGCGCTTTCATAAACAAAGCTACTACTAATAG
CGAGCTTTTAGAAACCGCGCCACTACTAAACGCGCGTATTTCCTTTTTTTATTTATGTTG
TATTTAGACAATTTCATACATATTAATATACATTATGCATAAAATAATATTAGATTAAAG
TGGGTGTATGCAAGTGATCAAATTGAATTAGAGAAAAATACGAGCACAATATCATATTTT
CCTATAATTCAACTTGGTGACTTGCATTCATCTAGTTTAATCTAATATATGTCATATAGT
TTATCATCCTCTTAATCATGCAACAACTCATCACCATCTTAATCATCTAACAATTCATCA
TCCTATTAATCATTAACAACTTATCATCATCTTGATCATCTAACAACTCATGACAAGTTA
ACCATTATTACATAATGTCATAAACTAAAAAAGGTCCTCTCTCTTAGGTAGAAGATATTA
TTCGCTCCGAGATAGAACCAATTACTCTCTACTAGGTAAAATAACATAAAACAGGTAAGC
TCATCTCTCTCCATTGAGATCTACCTATCTTCCACATGTGGTCTGCGTAAATTCTTCGCG
TCTCCGCCAAGTGGTTGTCTGCGGTCTTTCATTACTTTGCTAGTCCTTTGAGCTTCAGGC
TTCCATGCCTTCTAGAAAACGAGTATGTATTGCGGAAACATGTAGACCGTCATGGCCATA
AGCTGATAACATTCAAATGATGACCTTCTATAAACATCATTTCAGGTACAACCTCTAGCG
GGAATTTCTGTTAAAGAAGATAATAATAACATAGTTAACAATCTAGTTTTGCTTAAAAAA
ATTAATGTATGCAAAATATGGACTAATTAATTACACAATAATTAAAAATAATCTTACCAT
GTTATCTACATGGAAGTTACTAGGGTTCAACTCGTGCCCTAGTGACACGTATTCAGAATA
ACTTTCGCAAATATCTTCATAATTAATCTAACAATTATCAACATCATCAACAAATGAGAT
CACATGATTTTTCTCCGACCAAGTTAGATCGGAGCCAGGACTATAGTAGGTCATGTCTTC
TATCTTTTGAGTTTTTTTAAGAAGGGAAATAAACTTTCAATTAAAAATAAACAAGTTAAG
TACGGATGAACACCAACTATTTTTAAATAAACAATGCAAATTACTTAACAAATATAGTTG
ACAAACTCACATAAAGGTAAAGCTGAAAGCATATCGACATCCACCCAAATGTCAGTATTT
CCTTCAATATCATCTTAAGGACGAATATCAAAGGTTATTTCCATATCCTCGTGAAATCCA
TATGCCTTGCCTAGAGCTTCCCAATTCGAGCAACCAAAATGCGTTTGATAAACTCCATTG
TATAGTTTAACCAGAAATGTGAAACCATGTTTAGTCTTCACGTGAGCTCTTCTCGTCTCC
ATATTCTCCATTTCTTGAAAAATGAGCTTCTCCAAGACGTATCGTCTTGTATGGCAGGGG
GTGCACTAGTCGGATTGTAAAAAAGGAAATTACACGTCGAAGCAAAGAAACGCAATGCAA
AGAAGCAAGAACAGTTGTCATCGTTGCGTACCGTCAAAACATCAAAGGTTTCATTAACCT
TGATGGTCAAGAACCTGTCATTTCACACGTGAGGGATCTTCACCACAAAAATCACACTCA
CGGATCCCCTCATCGTCAGACATTTCCGATGTTCATGATTCAAAATTTAAAATCAACGAT
AATTATACGAGAAAGTATTCAACATGGGTTGTGATTTGATATGTCGAGGCTTTCCATGAA
AAACTCTCATATCCCATGGTGTATATGGTGCACACTTTATCACACTGATATGGTGGTGTA
TGTTGGTGGACACTCCCTCACACTAATTTTTTGACCGTCGGTGATGGTCGCACCTCTTCT
TGTCTCCTCACGCATTATACCAAGGTATATATCATGGGAAGAGAAGAAGAGGAAGCGACA
CCCACAACAACAACCGGTATTCCTTCATCAAGAACATACTAAAAGTCACACAAGGAGCTT
CGAGAGACTAAAAGTCAACCATATAAGCATTACTCAATTAACATTACATTTGTGGAGTAA
CGACATCAAAATGACCCATGTTTTGCCGGAATATCATCTAGTTCCTATTTTGACAAAATT
TCGGCATAAACTTTTCATAAAACGGGACACGCCGAGCGCATGAAATCCGCTGGAACTGAA
ATTAAACAACATTCCGGCAAAACATAGGTCACTTAGAGGTTTCATTTTCATTTTCATTTT
TGTTTTCACATTTTCATTTTTATTTCTTGACATGTTCAAACAGAGTCAAGTTCCTTACAT
TTTCATTTAAAAAAAATCATATCTTCACATTTTCATTTGAAAAAGAATACTAAAACTATC
CTAGTTCTAACCATGACATCTATCCATCCATTCTAGTTCTAACCCTAGAGGTGGGAGAGA
GGGAGGGAGGGATGGAGGGAGAGGGTAGGAAGGAGGGAGTGAGAAGGGAGGGATGAAAGA
GAGAGGGTGGGAGGGAGAAGGGATGTATGAAGGGGAGGGTGGGAGGGAGACATATCGAGA
AGGCGGTGGTGGCAGCACGGACGGCGGCGGG