morexGenes - Barley RNA-seq Database

Contig contig_56747

Source Contig contig_56747

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_56747 (5602 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
		No map location

Predicted Genes from contig_56747

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69648	2	1670 bp	AK249357.1	Available	Available	None
MLOC_69649	1	443 bp	None	Available	Available	None
MLOC_69647	1	194 bp	None	Available	Available	None

CDS Structure of MLOC_69648

CDS Structure of MLOC_69649

CDS Structure of MLOC_69647

Contig Sequence (5602 bp)

>contig_56747 5602 assembly3_WGSMorex_rbca.fasta
GAGGTTCCCATAGGTGTCACTCGACAATGAGTAGTTAGATCTGATTTAAAGTCTTGTTGA
GTACTTTCGTAGTCATGTTTGCTTAAAAACTGTTGCAGACGACACCCACGAACCATATGG
TGGGTTTTACCTAGACGTTGATGAGGGAGAGTAGCTGTCCCAGTTACGATCCTGAACCCT
TGGGAGGATTGTACATCGTCACGTTGTGCGCCTATTTTATGTTTTCACTCAGTGTACTCA
GACATCTTTACGCTTCTGCTCGGTTTGCAAAACTTGCTTGTATGACTTGTGTGCTGGGTC
ATGAGACCCCTACCTATATGAACATATCATACAAGGCTCTTCTGAGCCTTCTAAATANNN
GTTGTGATGTTGTATGGTTATGTTGCCATGCCATTGTTGTATCTACGCATATTGGGCATG
TCATGCCTATGTGTGATGCACTACGATATGTATCGGGTTCGACACCTGGTTGTGTGCCTT
TAGTAGTAATCTTTACAAGGAAATGACCTTTTGTGCTTTCATCGAGCCTTGGTAGCTTGC
TACTACTCCTGACACATTGGTTAACCGACATGTATCCTTATTTGCTGATGTGTCTGTCCC
TTTGGAAAAATGTCAAGCGGTGTAATGGAGTCCATGTAGCTTGCTATGACTCGTCTACCC
TCGCTATTGGCCGACACCTGCATTTATGTGTTACGTATGTGTGGCTTTGTACGGATGTGC
CACTTAGGTTTATAACAAGTTATGTCGATCCGGGTTCTTTAATATTGGAATGCTAGCGAC
ATATTCACATACGTGAGTCAAAAGACGCAAACGGTCCCGGCCAAAGTAAGGTGGCAGCCG
TGAGGATAACCGTACGTGAGACCGCAAAGTGATGTAATATGTTACAGGCTAGATTCCTAT
GGCTTAGGATCAGGGTCCCGACACTTTGTAGTGTCATATTTATATATTTGCAGACATTCT
TATCATTCTATTGAAAAAAACTAGATGGACACAACAACATGCGCCATCATGGTCTAGTCG
TAACAATGATGGAGTAACTCTTTAGGTGTCCATAAAGTGGGTCGGGAATTTCGTATTTTG
ACTATACTGAAGTTGGATTGAGAACTTCGTGCAATTTATAGTTTATTTTGTAATGCCACA
TACATGAAATAAAACATATGCATCCAGCAAATCAAAAATGAAAATTATACACCTGCTTCA
TCTTTTTGAAAAAACATATATTAATGCATATATACATTTGTAGGTTGTGTGTCATATGAG
TACCTTGTGCGTATGTGCTCATTCTAATCTAAAAATGTAATAGTTGACAAGAACCTTTCG
ACATGGCTACACCTTACAGGTAGCCAAATTTTCATAATGTAGAATTGTCCTATTTGACCT
GAAAAAACTCAGCATATTTAAACTATATATGGTTACATAATTACATGTCGTATAGGACCT
TGTTTTCAAGGGAAGAAGCAAACCCGGTAGTTTGTGGACATGAACTGGTGGTGGCAATTG
GTGGCTGAGTATATGAACCTCTTAGCAAGCCACTGGCAATGCCTTTGTATGTAACTTCTG
TGGGATGGAAGCCATCCCATGATGCATATTTTTGTGGGTCATCGCATACCTTGTAGTCTC
CATGCCCACATCCTGCAGTTGCAGACACACCGTATGGTCCTCCTTCACCACAACAAGCCA
CCAAAGGATCATCTATCCCTGAACAATAGTTAATGCAATGTGTAATGGGGGATCAGCAAA
TAAAAAAAATTACACTTGATGGCTCTGTATGTTTGTATAGGAGCTATAAATAAATAAAAA
AATCAATTTTGCCAACTGGTCAATAGAAGCAGCAACATACACAATGGTTCATATGGAATA
TGTTCATTTTGCAAAGGCACCAGAGACTGGTATGTTAGTTAGTAAGTATTTTTCTTGTAT
TATATGAAGTGTTCTCATAGTAATAAAAAGAGATGGCTTCGAACTCACCAAATTGTTCGG
GAGAATTGAAGATCTCCATAGCAGCTCCATAGTAATCAGCATATATGATCAAAACTCCAG
GATGAAGCTTTCGCAAATTTTCCAACTCATCCACAAGAAGTTTGTTATGGTATTGTGAGA
ACTCGTTCATCCAACGGATGCAACCCGTCTCTGGTTCATAATCGTCCATCTTGTCACTCT
TGTATGTCGTGAGGTAGGCTGGGATGCACCCAATTGGTAGGTTGCCAGGAACTAGCAAAG
TTTTGGCACCTAGCTCAACCAGATCCTGCAAACTCAATTCATTGTGCATTATTATCTATC
TACGCCTGCGCTATTTTTGGAGTTGGTACAGAATATTAGAACTGGCGATAACGGCAACAG
CAGCAGAAGCGGTAGGGAATGACTCACGGCAATAGTAGAAGAGATTTTGGCAATAATACT
TGGTGTGAAGGAGCGGATCTTCTCAAAGGGCACCCCGTAGAAAAGAGGTAGATTGTAATC
ATTGCCTCCAATTTCACCAACCAAGAAGAGAGATTTGCTCATCATGTCCATGCAATCTGT
TTCATTTGTAAATTTTGTTTTAAATTATTATACAAATATAACATCTATTTTAAAAAATAG
TGTTCTGAAATTACCAAGAAACAATATTCTATAGCATTGAACACAACATAGTTTGCAAGA
ACAGTTCTCACAATCTGTCGAAAACTTAAGTATTCTACAATGGGGACACACTATAAAGGC
TCAAATTAGGTTTACCACTAATATTATCTATCACATTAGAATGCAATTCAGAATTTAAGT
CTCGGGTAGCAATTGATTTATTTTTAGTGTTATTGTATCACCACAAGTTACTAGGCTTTC
ACAAATCATGTCATTGGAAATGTTCCATATTTTCCAACATCTACCGGCGAAGCTATATCT
CCTCTGGAACGAAAGCAATGTTGTTGTAAATTTGGTGGGGGAAAATCAAGCAACGTAAAT
TTTTGTGGTGTATGTGCTGAAATTTCTACTTTGTGGCTACAACTGAGTAGGTTTTTGTGG
TGTATGTGCTGAAATTTCTACTTTGTGGCTACAACTGAGTAGGTGTGTTCCATAATGACT
GAAATACGAGAGATATGGAATGTGTGGCTACTTGCATTCAAGTGAAACCATTGATTCATC
ATCGCGAGAACATGGATATAACATATTGTTCTTCCGATGAATTATTGTCCCTAACCATCA
ATTCATCATCTCGAGAACATGAATATAACATATTGTTCTTCCGATGAATTATTGTCCCTC
CATCATCGTTCATTAGTACATTTTCTCTTTTGAAGTATAATTTTGTTCTATTCTCTTATG
GAGCAAGTAAGAACATATGACCCTTCATTGGCTATGGTCTATGCCCTTCTATCTTCCAAG
CAATTTGAGTACTCATTCCTATTGTTGAGGAAATCGCTAAATGGTAGCTGCTCAGTTGGC
TGACCAGTAGGGGACTAATAGGTTAACCGGACATTATATCTATTAGTCGGACGATTTATT
AGTTTATCGGCTACTCATTGACCTTATGAGTGGGGATGAATTGGCAAGTTAACTGGTTAA
TCGAACGAATTCTTGAATATGGCTCCCTCGATCAGGGTTTATAAAACTTTTTTGCGTTTT
TTGATCATGAGTTTGACTTGCCAAATATGTGTGATGTGTCATCAAATAGGTGTTACATGA
ATGAAGTTTTAAAACATATATTTTTTTTTATATATAACCCATATTTAGTTAGTCAAATTG
ATAACCTAGAAGCATGTGCACACCAAATAAACTTGAACAGAGGGAGTATACGCTATCCAA
CATTCTTGCAACACCGCCACCTGTAAGAGCGTATTTCTCCATGCCTGGTTTTCGTAATTC
ATGGCAATCCCTTTGGACTAATGGTTGTCTTGAGTTATATTCAAAGGATTTGTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGTTTATATGGTGACCAAGGTGTTATTG
AAGGTTTTATCCAAAGATTTGTCATGTGAGAGTTGACCTTATTGCAAGCATGTCTTGAAG
AAGAAGATTGTGTGAGCATTCATGTTCACCTTCAAGACATCATCTTTATAAAGAGAGAAT
ATAAGATACAAGGTTGATCAATACTANNNNNNAGAGTGAATCAAGTTGATCAACACAGAA
AGCGTACCAGAAGTACCAATAGGGATCAAGTGATCCAATGGTATTTGTAAGTATTGTCCA
TTACGCTTTGTGTACTATCCCATGGTCTATGTGAGAGTTCTTTGTGGGGTTAGGTATGTT
TCCATGGGCTTGCGTTAAGAGGAAGATCTTATACAACCCATGGAGGATGAAGCATCACGA
AGAGTTCATGCTTGAAGTTGGTTGTCCATTATGATGACAATGGACTTGTGAAGATGTGTC
AAAGAGTTTCTCGCCCATAGTGGAGTATGGGGAGCAATCAACTAGTCTTCATCGAGGCAA
TGCAATCAAGAAAGATAGTGCATCTTGAGAAAGTCAAGATCATCATCATATAAATCAAAT
GGACCATGTGCAAGGTATAGGTTTACCCTTTATAGGTTTTCTATTTTACCAGTCTCATGA
TGGTAGTTGGGAGACTAGGTTATAGGATAGATTGTCATACTATCAAGGGGGGCTCTCAAG
TGAGTAGCTTGATCATGTCGTTCGTTGAGAGCTCAAACCATTTGCATCCTTGCATCATCT
TTGTTGGTTCTTGTTTGGTGTTTCTCTTTGTGAGTATTAGATTTGATGATCATCTTCATG
ACAAGTTCGAGTTCATAAAAAATGGAGTCCATNNNNNNNNNNNNNNNNGTTTTCGATGTT
AGAGTTTTTGTCGGTTCTTCATTTTCATACTTCCTCTTCTTAAGATAACCTATTTTTTGG
ATAGCTCTTGTCGTCCTGAATCCAACAAGCTCGAGTTTGCTCAATTCGGAGCTCTTACGT
GAAAGTTATGGCAGTTTCATTTCTCATGACAGTTTTCCGTGCTCACGAGGTAGTACCGCT
CGGTACCACTATGTACTACTGCTGCTACTACCGCTTATTTTGATGGTTCTGTTGGTCTGC
TCTTCACTCACGGCAATAGCACGGTAGTAGGGCGGTAGTACCGCCCACGCGGTACTACCG
CTCTCTAGTACCGTTGCTACTAGTTCTTATTTAGTGGTACTGGTCTCTTATTCGTCTCAG
CCGTAGTAGGGCGGCAGGAGGGAATAGTACTAACGCTTACATTAGGTCTACATCCCCAGC
GGTAGTACCGTTGGGTTGGTCGGTAGTACCGCTCTGGCGGCACTACCGCCTCGAGGTTTC
TGCCGTTTTCATGCTTTTCCTGGAACTACCATGCTAAGAGGTTGTACCACTTGTGCATGA
CCAGTGCACATAACGGTTGGATTTGGGGAGGCCTATAAAAGGGGGTCTTCTTCCCCATTT
CTTCTTAACTCTTGAGCTCGTGTTCTTCCNNNNNNNNNNACCTTCTTCGAGCTTGCTAAC
ACTCAATCTTTTGAATGATTCTTGCTAGTTCTTGAGNNNNNNNNNNNNNNNGATCTAGAT
CCACATTTCCACTAATCGCTTTCTCTAGATCCACATATCCACTAATCGCTTTCTCCTCTA
TATGAGGGGAACCCCTTGGATC