morexGenes - Barley RNA-seq Database

Contig contig_5664
Source Contig contig_5664
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_5664 (8535 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location
Predicted Genes from contig_5664

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69581	1	2369 bp	MLOC_69581.1	Available	Available	LOC_Os04g06990.1, FRAME:-3, EVALUE:0.0, 13104.m00617 protein conserved hypothetical protein
MLOC_69580	1	821 bp	MLOC_69580.1	Available	Available	None
MLOC_69579	1	696 bp	MLOC_69579.1	Available	Available	None
MLOC_69577	1	1005 bp	MLOC_69577.1	Available	Available	None
MLOC_69578	2	1933 bp	MLOC_69578.2	Available	Available	None
CDS Structure of MLOC_69581

CDS Structure of MLOC_69580

CDS Structure of MLOC_69579

CDS Structure of MLOC_69577

CDS Structure of MLOC_69578

Contig Sequence (8535 bp)

>contig_5664 8535 assembly3_WGSMorex_rbca.fasta
TAAGCCATTCGGGTATTCTAGACAGCAATTCTCATATGTAATTGTACATTTTGCAGACTT
GTGCACCCTCTGAATTGAGGACTGACACCAAGTACAATGCAAGGACTGGCAACAAGTTGT
CGCCACTAGTGGTTCGCAACGGCGAACTGTTTGGTGCCAGAGAGATGAACATGGTAATTA
ACATGTCAAAATTACTTTGGCAAAGTACCTGTCCAATCTAATGCGCTTCGATATGTTCAT
GTCTTGGTATGCAGTACTACTACTAATGCACCTAGAAAACATAAATATTGATACCTTGTA
TGCTTATATTTTTCCACTTATATCAATTGATAAATGAAGCAAAGCATCCTAGAATGTTAC
TTGAGCTTTGTCATGTATAATAGGACTTTGTACATCTACTTGGTCACTGCCCTCTCTCAT
TTATAACTGAAATGCTATAAGAACTTAGCCAGTAGAAGAGGAATACCATTGTTCACACAT
CAGAGCTCTTGCTATTTCAACCAATATTTGATTTTGCAATTTCAGATATCTTCGCATTTT
TTTGATGTTATGGTTACTGTTTCCATACAGAGTGAGGGCGGGCCTTGGCTGTCCCCGCGG
ACTGATCCACCGACTAACGTCAAGTTCTAAGCCACACATGTGGTTTGAATTTGGCTCTAA
CCTGTTTGAGAAACAAGATTTTGTATGGTTTGTGTGTACTCCCCTGTACAGTTCTGTTCA
GATACAAAAGTCATACCCAATAAATGTTGCCTCTTCCTGCTGATCGGGGAGGCAAATAAG
GTCCGCTTCTTCATTTCTCTTGCCCTACCTTATTTTATTTAGTAGCAGTGTGCTCACTAG
TTTTAACCCGCACGTTTAGCAACCAGCAACAGATTTAAGCTTATGTGCTTGTGAGGTGTG
GATAAACTATAACTGGCATTTTGTGCTCGTCTCCGTCGACCTATCCTACTGGTGTGCTGC
TGGTGCAGGTTGGCTAACCCTGGGCATCTTGACTTGATCTATATATATATATATTCCTCA
ATTGAAAACACTTAACTGAAATGAAGTACAAACTGAAACAACTGTCAGAAGGATGATCTC
CTTGACACCACTGTCGTGCCTCCTCGGATCCCAGCCAGCATAAGGCCCAGCCATCTTCAG
TTACACTTCTGAAATTTTGGATTGAAATACTTAACTTCCACGACCCCACACCACTTCCTG
CCACCTAGCATCAATGTTCATTCTTTGCTGCTCCAAGCTTGATGATTGAATCCTTAGACA
TGTCTCTCTTGGTGAGATTTTTCTTTTGGACAGCAAGCCAAGCATACAACTAACTGTCGG
AATGCTGGTTATGTAAAGCCCTTCAAGCTGACTTTGTATGTGCCTGGATTTGTTCACTTC
CATGTGATATTGTCCGGAATATGCATATAATATTTTTGGTGTGTTTTTTTTTTCTCAAAA
GCATGTCTTCCATCTACAATCACATAGCTATTGTGTGTTCCCTACCGCATCTCTCTGAAA
CGCCTAACACAAATAAGAGTCTGAAATAAACACCACAAATGGTGGGTGAGCGTCTCTGTT
CTTCCTACTAGACAGCAAGTAAAGTACATCCAAGGTTTAACTGCAAAGTTAAACGTAACA
ATACTAGTATAGCCAAATAAGATGAGTAGGATTGGGCAAATTTGCCCCCATAAGAGCAAA
TCTAGCGGGATCCCGTATATGCTCGCTGGCCCGTATAATTCTGGTGGCTGGTGGTTTTAC
AGTTTTCTGTCAATTTTGGGCCCAAACAGATCCTGTAAAAATAGCCTGGCCTGGAAAAGA
TGTATAGGCGGCCCGTAAATTCCCTCCTCCGCCGCTATAAGTACGGGGTCGGGTGAGTTG
AGCTCCGGCGTTGAGCTCCTCACATCCTACATATCCTTCACCGTGATCCGCTCCCTCTGC
CGCTAGCGAGGTTGAACTCTGGCGAGCAATTAACCACATGCAACCTTTCCTTTCTCGCGC
ACACCCGCAATCCATGGCAGGCAGTAACGGGAGCAGCCATGATGACCACGTGGGCGCTTG
CGGAGGCTGAGGTGGGCACCGGGGCGAGGCAAGCAAGTGTCACCGCCTCGACACCGACAA
AGGCTCCTCAAGCCTTGCCGTCCTGATCCACTCAAGCTCGAGTTACGATGACGACAAGGA
CTGGCGCGATTGGAGGTTGAGGCAGGCTTGCAGGCATGGCAACCTCTCCTGGAGCAACGA
CAGTCAGGCGTGGGGCGGGTACCATGTGATCGACAAGCATATCACCCCTCACACCCAGCA
CTGTCGCGAGACAGAACTAGTGGTGCGTGACGCAAAGCATGAGGTGGCGGTCGGCGTGGA
AGGAGCTCAGGTGCGCCTCGAGCTTGCACGGAACAAGCACGGCCTCGCCGTGACTATGTG
CAAAACCACGGTGAAGTATTACCACGGATATGATGAATGATCTAGGATTAGGTTTATCTT
TGTTTTGTTGATGCACTCCGGCGGTTAGGTCTAATCTTCAATGCATGTATGAAACTATCT
TCTTTTGTGCTTTGTTTGATGAACAACTTTGTGTTTGTGATGATGAAGAAGCTCAAGTTC
TTGTGCGAATATTGTGTTCAAATTTGCAGTAGCGTTTTTACAAGATCAATGCCGATGTGC
GATACCCTAAAAGTGTTTTAGGCCCTGTTTGGAACCACAATAAATTATGATAATCTAGAT
TATGAAGATAGATTATATAATCAAGTTTATAAAAACAATCTAGGTGGGCATGTTTGGAGG
TCAAATTATATATTGTAATTCAGATTTTTTTTACATTGCACAATGACCTGTCTGTCCCAT
GCGTGCGCTAAAGAAAAAAAAGGAGAAAGGTTGCGGTGGCAGAAATTTGTAATTACCTTC
AACTTTATAAGGATAATGGGTCATTAGCAATTCATAATTTGATTTTATCTAGTGTAGAGT
AGATTGTGAGTTTTTAATAAACTGTTTATCTAGTTTTTATAAATTTATAGTGAATTATAA
AAGTTGGATTATCATAATTTGAGTGGTTCCGAATAGGACCTTAGAGGACCCCTCAAACGA
TTTTTGTGATACAAATTTATAGTGGATCTGCTACAGTTGCTCTAAATGTCCACGGACGTG
CGGACAACGTCTTCCCATACCTCATTTTATCGTCCGGACAATCACACCCTTTGTATTCAA
ACCCTTGTTTTCATACAAACACGTAACATGTTCATCATTCTTTTTGTAGGAATCGATTCA
CGGATTCAACATAAACCAAAATATATATTATGATTCAGCAATTCAACAAAAGCCAAAATA
AAATTCCACAATTAATACATTGACGGTACACTAATGAATCAATCGCCTCCATTGTTTCTC
GTTGATCTCTTTGTCGAGGAATCACCTTTTGCTTTCGTCATCCAAGAGACTAGTGTCCTA
CAACATGATCTTCGAATCCTTCGTGACCCTCGCAAGCCTCATCTTATCTTTTCTCAATCT
CAATTGTCTCCAATGTCTATGCCTTTTCAACCTCTCATTTTGCTCATTTCTCTTGCATCT
CCATGCCTATCCTCTCCCTCTCAATGCTCGACCTCTCTCGCACCCTCTTTATGTCGAACA
CCATCATCTCTCTTTGCACATCCAAGAAAAGCTTGTACCTCTCCCTCTCACCCCTTTTAT
CCTCCATTTTCATCAATGTCTTCCCCTTTGTTGAAAAGATGTCCATCCATGGAAGGGACA
TTTCGCTTGCTGCGTCATCAGGCATGAGCCTATATCCTTCCCCCACTTCTTCTCTATCAA
GTGTATATTCCTCTTTGGCATGGTCCCTTGTTTGTCCACACTTCCACTTTATCTTCGTCA
TCCAATCCAATAGATTGGCGAGAGCTTGAGCCACCATTTTTCTTCATCTTCTTGGTGAGG
TTCTTGAGATCTTCAAAGAGGGTGTACCTCTTCGGTTTCCCCCATTCAACACCACCCAAC
AACGGAACAAAGCGAATGGGTTCTTCTCAATTTGATGGTACAAAGTGATGGCAAACCCCG
TCTAGCAAGAAAAATCACACGTCAACATAATACCATGAACGAAGCAAGCAAGAAACGTGA
TGACCATGTGAAGGCAAAACTTGCATGGCTTTCAATTCCAGTGTCACTTTGATGCATATT
CACCACTTGTGCATACAAACCGCAAAATATGTTCACATCTCTTGGATGGTGGCTCATATA
TGTTGGAGAGAGCCCTCGGTGAGGGTGGTATGAATAGGATGCGGTTGCATGCATATAGTG
CTTGTGTTCATGGTACCAAGCATGGATTTTTTTTCTTCCAAATGCCATTTTGCTGCATTC
CACAAATTGGATCCATGCTTGTGGCCAAGTAAGCTCTACGCAACAAAACATCTTCATGGG
TTGAGAATGTTGGTCCTCCTTGGTATCACCAACTTCATAAGTTGAAGATTCTTGACCGTC
ATTTATCACGTCCATCATCAATGTGTCCTAAAGATGCATCACAATGAAACTACAGTCCTA
AAATTGATCCAAAAATGCATATGGGGCAAGAGAACACGTGCTAATTTTGGTCCAGCTGTT
CTCCATGGCGCTGGCGGATGATGTAGCGAGTGTTGAGGTGGTCGACAACGTGGACACGGA
GCAAGGATGGAGGAGGGCGATGACGCGGATGTGGGAAAGGAAAGGACAAACGCGGGAGAG
ATCCGGTTGATTTGGAGGGAATTGAGGTTGGTCCGGCCTTCCCGGATCCGACATGACGGA
CGCATCCGGACGGATCCAAATCTGTTCCATATATGGGTTGGGTTTGAGTGATACCCAATA
GCCCAGACATATTGGGTTGGGTTTTTATTTTTTTTATCTGCATTGTCTGTCTGGATATAT
ATATATATATAGGGGCGTAGCAGGGGTCTGGTTGGAGATGCTGTAACGGGGTGCTTTCCA
GATGAAGACAACAAGGAAATCCGCCAACAATTGATGTACAAAGACGTGGAGGAATCTGGC
ATGTGCTCATCACATTAGCATGTTATCCGACGTGGTTGCATCATGCGAACCAGCTCATCC
ATTAGTAGCTCGTTTGCTCCGAGTGCATAACATACAATACTCAATAAGATTGCTGCATAT
TGTGCTGCGTGCAGGATTCTTGCTGTAATACAAGGGTTTCAGTTTCAGCCTCATGGCTTA
GCGATTTGTTTCATGAGAAAGTTTTTCCATCTCGTTCGCTCAATGGAACTCTCTAGGTCG
CTGAGACAAAAGGGACGACACAATTCAGTATGAGATTAAGGATATACGTTAATACGTAGG
AGAGGGATCTCTAAGCTGATGTAGTCATAAAAAAATGGCTAGTAGACAATAAGATCGATG
AACCGAGATCCTTTTTATTAAAGAAGCGGAGCAAGATACAGATTGATTTATGTGGCTCCA
TTCTCCAACGATGATACAGAGAAATGGTGCTATACGTCTTAAGAGTAGTTGTATCATCGT
CATCATCATGCCCCTGCGTGACTGATGCCTTCTCCCAGGTCCATCTTCTTTCTTCTGATC
AGGGTCCCCAGGTATAGTTGGTAAAAGTGTTCTGGCATGAGCCACAGGATGGTCGTCAGC
TCGCCGCCGCTGTTGAGCTTCTCGGCGTGCGCCTTCCTGCTGCACTTGTTGCCCGCGTAC
ACGAGAATATCCGTCCACACGTCGAGGACAAGTTTCACCGAGTCAAGCGTGCCATCCTTC
TCCATTGTCAGCAGCTGCTTGGCGAGCTGAGCCACATAGGGGAGACGAGGAGCGTCGTAG
CTGAAGCTTCTGCTCTCATACTCATCATACACGTTTCTTGCAAGCTCCTCCCTGTCGGCG
ATCCTGGAGCTAGATTCAGGGTCATCGTGGAGGCGGAACAGGTTCTTGAGCGTGGCACCG
AGGTTCATGCTCTGACGCCTGTGCGTCGATCGCCGGATCTTGACCAGGTTTTCGCAGGTT
CGTTGGTACATCCTGTTCTGTGGGAGGCCCGGTAGCATATCCGGTTGCTCCACGAGAAGG
AACATCATGTAGTTGGATATCACCCTGATCGCCTCCACGTCGAGCCATGCCTCCTCTTCT
TTGGCTCGATCGCTCTTGGCGAGGAAAACATCGCTGCAGACGTGCCAGATGATGATGCAC
TCCTGGAACTCGACGCCGAGGGAGTCTTTGAAGATGCCGGTGAACAGCTTGTTGCTGACC
AGTGTTTCCTTACCCCACCTGTTCCTGAGCATGCCTAGCGAGTTCACGGCCCCCTCCTTG
TACATCTTGTTCATGTGTCTAGAGATGCAATCCTTGACATGGTCCGGCATGTCGATGACC
CATGAGTGATGCTCCCTGTTCCAAACCTCGTTCAGACCAAACCCAACCATCTTGGCCAGC
CTGCCGAGCAGAGGCCTGGTGACAGAGCGAGTGCAGAAGTGCAGCATGTTGTACTGTCCC
ATGGTGTATGACCACCTCCTTGATGTGTACCGGCTGCCTCCTCCTACCCTGACAAGATGG
TGAAGGTATGCAACCACGCGCCTAAGCCGATCCCATCTTTCGTTACACAGAGCCGCGTAC
CGGAGCCAGCGCCATCTGGTGGTGCTCAGGAAGGCAAACGTCCAAGAGGAGCCTAGGGCG
TTGAGCAGCGACGTCGTCTCCATGAACAAGGCACCACCGTACAGCACGTAGGTGATGTAG
ACGTCGACGCTGCGGTTGTCGTCGTCCTTGTCGATGAGCTTGAAAAGCAGCAGCGAGGCG
ACAATGGCGAGCGGCGAGACGAGACGTACCGAGTAGCCGAACCAGGTGTGGATGACGGGT
GCCTTGGTGTAGAGCGTGTCATACATGAGGGACAGCTCCGTCTCCATCAATCGCCATAAC
TTGACCTCGCCTATCATCTTGGTGGTGTCTTGGCCGTGCGAGTCGTCTTCCATCACCGGA
TAATCGACCACGGCGCGCTTGCATATGTGGAACAGCGAGTGAGCTCGTCGCACGAGGGAC
TCCTCGTCCAACTCCTCGTCCTTCAACACTCTATCCTGAGGGTGGAAGTGCCCATGCATG
GCCGGCGGTTGCTTCTCGATGGAGCCCCGGATGCTGTCCAGGTTGCCGCGCATGAGCGCC
CACGTCTTCTCCCCGTACTTGACAGCACCGATGGCGAACATCAGGACGGAGGCAAGCAGG
AGCGATGCTCCTCGGTCGGCGATGTGCTCGTAGAGGACATAGACGGCTCCGGAGACCTGA
AGGACGGCATGGAGCAAGTGGCGCTTCCACAGCTTGCTGTCCTCGAGGGAGTAGGCGGTG
ATGTTGTCCGGGCCGCCGAGGTGCAGCAGGAGGAATGGCGCCCAGAGCGCGACGATGGGG
TGATCGCGTGGGGCGCCCTTGAGGGAGAGGTGGCCGAGGGCGAAGGTGGCGGTGTAGTCG
GCCAGCTGATACGCCAGCCAGAGCAGGGAGCGCAGCACCGGGTGGGCACCGCGCCTGCGG
ATCCCGGCAAAGAGGAAGAGGGCGACCTGGAGCCCGAGGCTGAGGAGCACAAGGATCTGG
ATGGACCAGCGCTTCCACAGCTCCCCGGGCCAAGCAGCCATTGCTCCTCCTGTTCCACGA
AATGTATTAAGCTAAACAAAATAGAAAATACACATATATATCGCCACTAAATATATGATG
CGTTGCGGCTAAACTATGATGGTATACGTACCGTCGTCCCAAATTCGGTCTGGTCCACGG
CCGGCAGTGGAAGTGGAACAGGGGAATGGTTGAGGCTGGATAGGCTCAGACTCGTTGCTT
CTCGACCCCCAGTCTCACCAAACGGGTAGTATAGCTAAACTGGAAGAAGATGATCACTCC
ATCCATTATCTTTTTTTTTTTTTGCGGGGAACTCCATCCATTATCCATAGGTGTGATTCC
GTGCTTGATGGTTCCAACTAATCTATCAATTATCTCCTGCTCGCGCACACACACTACCAA
TCTAGCAACCATATATTAGGGCATGAAGGAGATGATTGATGGATTAGTTCCTGGCCCATG
TGGCGGCTAGAAACCAGTACGACATGAAGTATGGTTAATTTATAGTTGTATAAATGGACA
ACTTTATTTGTAGCCAAAAGTCGGACCAATGTAGATCGGATTGCACCGCCGCCAATTATA
TTAGCACACACTTGTACTGTAGATCGGATCAATGTTGCACCCGCAAAAAAAAAGAGAAAT
TGCTAGAGAATCTTATGGAAAAAAAACACCCCGACCATCTATTATTTGACCCTCATTATT
GAACACATATTAAAGGATTTTATATTCATCAGTCAATCTGATAACCCGCTTTGGAGATCA
TGAATTCATCATCTCAAACTATATACAACTACATGTACATTTTGTTTGAGATCAAAAATC
TGTCTATTGATGATCACAAGTTACATATTTATAGTCCCCGAAAGGACGCATCCGAAGGGA
CACAACGGTTACAAGAGTTGCATCTCCTTGTATGACGGTTTGGTAAGTGGAGAATTAATC
CTTAATTAAAAAATATTAATTAAGTCTTAACACTCCCCTTAATCTACGTTTGTCCATGTA
GTATCAACATCTTGA