morexGenes - Barley RNA-seq Database

Contig contig_56616
Source Contig contig_56616
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56616 (7446 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location
Predicted Genes from contig_56616

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69561	2	3455 bp	MLOC_69561.1	Available	Available	LOC_Os01g62460.2, FRAME:+1, EVALUE:0.0, 13101.m06693 protein ZOS1-16 - C2H2 zinc finger protein, expressed
CDS Structure of MLOC_69561

Contig Sequence (7446 bp)

>contig_56616 7446 assembly3_WGSMorex_rbca.fasta
CATGCGACGTTCCCCAACACATTTTGCAGTTGATTGTGGACATGTTAAACAATGAGATCC
GAAGACCTCGTGGATGGTGATGATATCTTGTGCGATCATGCACACTATGATCGTCGAGGA
TGAGGGTGAGGATGCTGCCGCAACTCTAGAATTTGAGAACATGGGTGATCCTATCAAACT
TTCAAATCAGTATCCGACCACATTTGAAGAGTTGATTCAAATGCATCAACAAATTCAGCA
TCGACCAACTCACAAGCACTCGAAGGAATACCTGATTGAGTATTTGTGGACAGCTAAAGG
AGACAACAATGTTGAAATGTAATATTTGAACTTATTTAAATTTGAAACTACTGTTGCATG
CGACTATTTTTGAATGCACGCACTCTATGTATGCGGCTATTTGAACGCCTGAATTCTAAG
TATACGACTATTTGAGCGCATGTCCTCTAAAAAAATAGACATGCCAATTGTATGCGGGCA
GCGTTGGATGGTGGTTTCCGACATCGATGTCCACGGAGGGATACCGAAGGGAATTGATGG
GTGAGTGTTGGAGATGACTAAGAGTACAATCCTTTTTTCTTTATGTAGAGTTATACCTTG
CCATGGGCAACCTGGCCCGGACGGCCCGACCCGATCCGGCCCGAAAATCTCTAAACGAGT
TTTTTCGCGAACTCTAAACGCGTTTTACGGATCAGCTTTATACGGGGTCGGCTAGAGATG
CTCTAAAGTTACTACAAAGTTAAAGCATTTCTTTTGCAACGGAGGGAGTATTTGATTGAA
AAGGGGTGCACGAGTTTTCAAGAATGTGGCCTCTTCAATGAGCCATTGGTGAACTTTGCG
GAAATTGGTTGACGTGGACCGATGAGAGGTATCATAGTATAGCTCTTTTTTTGGAGGGAG
GGAGGGGGGAGGGGGTAATTTGTCCTTTGACGCTTTTCCCTCTTAATTCAAAGATACACA
AAGCTACTACATGTTCTCGATATATTTCACGTATGTGTTTTGGTTGTTCCAAACCTCCCA
ACAGCAGGAGACGATCATTAGACGACATGCGATGATCTTCCTCCCTCGTGAGGTTTGTTG
CCGTGTTGATCAATCCAAAGTTACAAACGGGGCATTCTATCACGAGGAGGGTTGAAAATT
AAGACGTACCCACCATGTGAACCCAACATGCGTTCAGTCTACAATTTTTACCGTCGAAGG
GAGATAACTATATTATCTTAAGGAGTAGTATAAAGATTCACACGTCAGAGAGAGGGATCA
AGTCATGCAATACGCCCCCACACAACTCTGTCCTACCAACCGATGCCAACACACACATGG
GCAACACCATCGGTCTACAATTTGCTATCACCACACCCACGGATTAATTTACTGCAAGAG
AAGGTGACATGTACGTCAAACGCCAATGCTAGACTAGACGGGTGCTTAATTTTCTAGTAA
TATGCATTTGTCTGGTTCTCTTCACCACTGAGTGATCTTCACAGAAAGGTCAAGCATATG
GTTTTGGTGCAGCATCCCATTGACAACACTTCCACATCTTTCATGCGGAGAACGCACAAC
TGTATAGAGTACGGGGTTACTCTCTACTCCCTCCGTCTCGGTTTACAAATCCGATACATA
TATTTAGATCGTTAATTTGATCAACTTAATGGGAGACATATATAACAAAAAATATATTAT
TAGAAATTTTAGATGTTCTATTTTCTAATGATATAATTTTTATGTTAAATAATATAATTT
ATATATGTCAAATTGATGATCTAGATGTACGTGCATGTCTTCTAAACTGTGACGGAGGAA
GTACTACAAATTCATGTTTGTTTAAATGGCTAAGCAGAAAATTCATGTGTGTGGATTGGA
AGAGTTGCGGAGCTGGCAAGGAGGTCAAAGAGCGGTCCAGTCAGGCGTCAAGCCCCGATT
GCCCGAAGCAATCAGCACAGCTCAGCCAGCATTGCCGCTGGTCCACGAGCACAGGTCTCC
ACCCCACCCCGCCCGTCCCCGTCTCTGCTGCCCGTGCGGCCCGGTCGCCACACCCGACGT
CCCACGATGCTTCCCCGAAACTTCCCTCCGTGCACCGCGCCCACCACGTACGTAGCTCCA
GCTGCGCGTGAGCTCACCCCGCGGCCGGACGTGGACGGGGCGCACCACGGCTGTGTGGTC
TCGTGGGTGTCGACACTTCCGCCGCCGATTCACAGGGCTGGCTGAGACTCGCGCGCCTCT
CAAAAGAACACCCATTTTCCTTTTCCCCCATTTATCACCCCTCCTCCTCGCGCTCCCAGA
GCTCCGCTCGCCGCCACCTCTCCTCCTCCCTCGGCTCGCGACGCAGGTACCCGACACCTC
TACCCATCGCCGGCGTCGGCCCACGACACCTCTGCCCATCGTCAGTGCCGAGTCGACAAA
GCCGCCGCGTAGATTCCGCGCTCATCTCCTTCTATTTCTGCGCATCTGCCAGGTGGGAGA
TTGGAGTGTCTGCCCGCCCGCCTTAACCGCCACACCCTTGCATGCCCTGCGGCGGCGGCG
GCGGTGTAGGTGCAGCGCCGAGCCCGCGTAGATGGTCATGGACGCCGCGCTCTACGACTG
GTGCGGGCCGCTGCCCGCCGGATCCAAGCTGCCAATCCACCCCCAGATCACCGCGGAGGA
CCTCGAGTCGCTGCTTCTCCTGCCGTCCGACGGCGCCGACGCGGCCGCCTACCTGAATGC
CGCGCCGGCTCCCCTGCTGCCTGCCTCGGCCGACACCGCGTCGCCGCCGCCGCCACCCGG
AGACGCCTCGGCCCCCTCACCAGCCGCGCCGGACGACTCGGAGGTGTTCTCCGACATCGT
GCTGGGCTACATCAACCGCATGCTCATGGCCGAGGACATCGACGAGAAGTTCGACCACTA
CCCAGCCCACCCGGCGCTGCTCGCCGCCGAGAAGCCCTTCCTCGAGATCCTCGCCGACCA
GCCGCCCTGCTCGGGCGGGAGCACGGTCGAGAGCCCGGACGGCAGCAGCGTCACCACCAA
CTCCTTCAACAGCCTCGCTTCCTGCAACTGCGCCGCGCCTTCCGGTGGCCTCTGTGCCAT
GCAGGCGCCGCCCGCTCTCGAGTTCCCCACGCCGGAGTTCCCGCACCCGCCGCACTTCTA
TCAGGATCTGAGCCCTGAGAGCTGCGTGGTGGAAGCAGGCGGCGCGTGGCCGCCGTGCGA
CCCCATGGAATTCAACCCTCTTCCTGACGCGCTGCTCTCACAATCCTCGTCCTTCGCGTC
TTCAAATGGCAGCAGTGTTGCATTTCCAGAGGGCTTCGAGCCGTGGCTCAGCACGGCGGA
TGCTGTGCCTCATGCTGCCTTGAGCGATTTTGTTCTGCAGAGCCAACAAGCGGCGCAGTT
CAGCCGAGGATTTGAAGAGGCGAGCAGATTTCTGCCTCAAGAGAGCAAGCTTGTGATTGA
CCTTGACAGTTTACCGTCAGTTTGGGTGAAACAAGATAACAAGGTTGTGGAGGTCAAGAG
AGAGAAGGCTGATGCTCAAGTGGCAATTCATCGAGGAAAGAAGCATTTCTATGGTGACGA
CTTGGATGCAGATGAAGTGAGATGCTGCAAGCATTCAGCGCCTGTCGTCGACGCAGATCA
CCTTGTGCGGGAGATGATGGACAAGGTCTTGCTATGTGACGGGGAGACATGCTCTAGAGG
TGTCAAGGAGCTGCGTGAGGCCCTGCAGCACGATGTTGCAAATCATTCAGGTGCTGCCCA
TGGCAAAGGGTCTGGCCATGGCAAGGGCCGTGGCAAGAAACAAGTCAAACAACCCAAGAA
GGAGGTGGTCGACTTGGAGACTCTCCTCATTCATTGTGCTCAGTCCGTGTCCATTGATGA
CCGGCGGAGTGCAACCGATCTCCTGAGGCAGATCAGGCAGCATGCATCTGCCACCGGCGA
TGGTGACCAGCGTTTGGCACACTGCTTTGCCAATGGCCTTGAGGCGAGGCTTGCTGGTAA
TGGAAGTCGGATTTACAAGTTACATACCATATCACGGTTTGCATGCACTGATGTGCTGAA
AGCCTACCAACTGTACTTAGCGGCTTGCCCATTCAAGAAGATCTCTCATTACTTTGCCAA
CCAAACCATTATGAATGCTGTGGAGAAAGCCAAGAAAGTTCACATTGTTGACTTCGGCGT
ATACTATGGCTTTCAGTGGCCATGTCTCATTCAACGGCTAGGTAAAAGGCCTGGAGGCCC
CCCAGAACTTCGGATCACAGCAATAGACACACCTCAGCCTGGTTTTCGCCCAGCAGAGCG
CATCGATGAGATTGGAAGATATCTAAGTGATTATGCTCAGACCTTCAAAGTTCCTTTCAA
ATACCATGGCATCGCATCTCAATTTGAGGCTGTTCGGGTTGAGGATCTCCACATTGAGAA
GGACGAGATTCTGATTGTCAACAGCATGTTCAGGTTCAAGACTTTGATGGATGAGAGCGT
GGTAGCTGAGAGTCCAAGGAACATGGTATTGAACACAATAAGGAAGATGAACCCACATGT
GTTCATTCATGGGGTCACCAATGGATCCTATAATGCACCATTCTTCGTCTCGCGCTTCCG
GGAGGCATTGTTCCACTTCTCTGCTGCCTTCGACATGCTGGAGGCCAACATTCCCAGGGA
TAACGAGGAGAGGCTGCTCATTGAGTCGGCTCTGTTTAGCCGGGAGGCGATTAATGTGAT
ATCTTGTGAGGGAATGGAGAGGATGGAGAGGCCAGAGACCTACAAGCAGTGGCAGGTGCG
GAATCAGAGAGCTGGGTTCAAGCAGCTCCCGCTGGACCAGGAGATCATGAAGCGTGCGCG
GGAGAAAGTGAAGTGCTACCACAAGAATTTCATCATCGACGAGGACAACAAGTGGTTACT
ACAAGGATGGAAGGGGCGTATCCTGTATGCCCTCTCAACATGGAAGGCGAATCCCCAATC
TTCCTAGCTTCTGTAAATGGTGACCTGTTCATATTTTTGGACTCTAGAGCTGATTGTTCC
TGGCCAACAACCCGTTAGTAGGTAAAATGCTATTTGAACCGGCACCAAAGAAACAAAACC
ATTTATTCACCAGTGACATGGTTCATTTGTTTGTTGATGCAGATGATGAACCTGATTACT
CTTCTGTAGCACCTGCCCGTTGTATGTGCCCATACACGGTTAGTTTTCACAGGAATAGTT
AGTGCATTTTTGGTGGAGCAGGCTTAGTTATGTTAGATATAGGTGCTTCTTGCATGGTCA
GTCTTGTATTATATTCTTCCTTCCAGAATCCAGAGTACCATTCAGTAATGTTTCAAGTAT
GTGCCTTTTTCATTTGCTTAATTAAAAATTGTAAATACATGTTGTCTTGAATTCCAGTAT
TATGTAAAGAATGCCACTTAAAGTTTGCATTGCTGGTCATATACTCGTATAACAATTTAC
TGCTTCGCCTTTCGTGCTTATCTTGTTTTACATGCTGCACTGTCGAATGCTCATAAAGAG
TCTACTGTTTCGCCTTTGGTGCTTATCTTGGTAACCAGTTTCATTTGCCAGATGGTGATA
CAATGTAACTGGTTACTCATGCATGACTCTGTGGCTGTAGCTAACGAATAATGTTTGAGA
CAAAACTAAAATGGAATACAAAATCAATCCCAGTCTCTGAAGTGGCATAGTCATTGGCTA
TGATGTTTTGCCCTTTGGCTTATTCTGGCGTGAAAATGCTAGTGTTGGTTCCTAGGATAC
AGTTGGACCCTGATGAAATGACGTGTAATATGAAACAACCACTATTGTATCTTTTCAAGT
TGATGCCTTTTCTCTTTAGTACTCCCTCCGTAAACTTTTGTAGTAAGACGTTTTAGATCA
CTATTTGTGGTGATCTGTAAAATGTCTTGTAGAAGTTCTCACACGTTTTAGACTACTTTT
GTAATATGAACAACCAGCATTGTATCATTTCCCATTTTGTCGTGTGTTTTGTCAGTTTCC
TGTCCAATTTCCACATTCAGAAATACACCTCGTATTGAACAGCAACAAAAGAGAAGCAGT
ACATGCATTCATGTTGGTTCGTTTGCTTGCTTTTATCCACGCAACTACGGCCACATAAAT
ACATGATGGATCCGTTTCAAAAAAATAAATAAATAATATACATGATGGACCAGGAGACGT
GTATGCCACAGCTCCGGACGTGTAACGAGGCCTGGGCATCTAGAAGAACACATGTTCGGC
AACGTGTAAAACTGCTGCTCCAACTGGCTGAAACCGATCGCCCGCCATGGGCGTCACTTT
CTCCCGAAAAGCTCGGCGCATCTGCCAAAGATAGGCTGACAACCTTCTTTTTGCCGTATG
TACCATGGTCGATTCCTCAGGAACCGGGGAGGTGATGGAAGAAAGCACGGGCCCAAAGAA
TCCAGACATGCCGGCACTGCACCACAAGGAAGAAACACTTCAAAGCTGGACTGCAACAGC
TCCAGCGATAGTGGTAGTAGATACTCCTACTTGGCAGATGCTGCGGGGAAGAAAGCCGAG
GTGCTCTAACAAAGGCCAAAGCCGAGGTGCGATAAGTCTGGAGAAGTCCGTGGTAAACTC
GTGGTGGATTACAATTGCAGTCCAACACAACACCGCGACGGTGACCGCTGAAAGTTGCCG
GAGCTCCGCGATAACAAGTACGGACAAGAGGCACGTCGCGACCATGTCATCACCGGAGAT
AAGATGCGTCAAATTACCGGTGACCGGGGTGCAGCATATGCCCTGCCCTTCACACCAGGG
CATCGCCAAGACGGCATGGTTCGCCGAACCTGACCTGGAGGCGGAGCGGTTCGTGGCCTG
GCTGCGATCGACCGAGGCACGGGCGGGCGAATCAGGCGGAAGATGCCCGTGTATCTCGGC
CTGAGTTTTATATACTGCTCCCGCTAGATCCGGCAGATTTTATTCGATCCTGCAGCGAGA
TCGCGGTGGCGGTGTGTGTTTGTGAACTTTGCGTTAGAGTAATCCGGTGTCACGGTGTAA
AGGACGAGCTGGGCGTCATATGCGGCGACAGCGTATGACTTTGTCGTCCTCTCCGCCAGT
GATCATGTGAAGCAGAGACCTGAGGGATCTCAAAACTGTTTATTATATCATGTTATCGAC
GAGCCGAATCTGAGAGAGACGAGCGCAACTTGTGTAGTTTTTTTTTTTGCTGCTACGGAT
CGATCAGCGGATGTTTTAGTAAACATCTCCCACCTGAGCCGTCCGGTCTACGCGCAGCCG
TCCGATCCGCTCCAGCCGGGTACCCCATAATTTCTGAAACGACGGTTGAGTTGCAGAAAC
TTTCCTTTTGTTACAAGAAATAAATTTTGGGTCCGTAAATTTTCTGAAACAACGGTCGAG
TTTCCGAAANAATTTGCTTGTTGCAGATTTTTTTTCTTCATCTTTCTGCAACATATGTAC
TTTTGCGGAAGAATTTTTTACAACAAAGGTCATGTGTCAGGAATTTTTGCAACAAAGGTC
AGGTTG