Map Locations of contig_56614 (7542 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map locationNo map location




Predicted Genes from contig_56614

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69560 1 966 bp AK356510 Available Available None





CDS Structure of MLOC_69560






Contig Sequence (7542 bp)

>contig_56614 7542 assembly3_WGSMorex_rbca.fasta
CCACACGACAATCTTGCCGCGGCACTGCCCCTCCTCTCGCTCGCGGTTTCTCTCCTCCAT
AACCCCATGACGAAGCCCTGTCGAGCTGTCACCACCAACACCTCACCACGTCGTCGTGCT
GTCAGAGGACTCGGGCTGCTACTTCACCATGCTCGCTAGATCGAGGAGGTAAAGGCGTCA
CCAAGCCATACGTGTGTTGAACGCAGAGGTGNCGTCCGTTCGGCACTTGATCGGTAGATC
GTGAGACGGTTCGTGATTGGATTGCGAAGATGTACCACTACATCAGTCGCATTCTTGAAC
GCTTTCGTTTAGCAATCTACAAAGGTATGTAGATGCACTCTCCCGCCTCGTAGATGTTGA
TCTCCATAGATTGATCTTGGTGAGTGTAGGAAAAAAAATTGTTTCCCATGCAACGTTCTC
CAACACTGCTCTCTCTCATTTCCTTCTTGCCCCTTCGCACCCTCCTTCAATGGCGATCCC
ACCGCCGTGCCGCTCCCTCACCCCCATCATCGCTAGCAGCATCCTAATCCAAGAGCGGTC
GATAGCCGACTTTGCCAACAGCGTACATCCGCGTGTTTTCCCCCTCCTACATGAGGTCGT
GTCCTCGCCCCAATAATGTGTTGGTTGCTCCATCTCCAACTCCCTATCCCGACCTGGTGG
TCCTGGGTTCGATAGCGTCGCCGGCGAGGGTCCCATCGGTTGCAGCGATGTTCGGAACCC
AAGTGACCGGGGGTATTTTACCCTCATTCGGGGTTTTCTCAGGGGAGCGAGACATCGGCA
TGGACGACGACACCCTCTACATCTACCTTCCGCGTCACCAAGCGTACCGGTGCATCGGCG
ACGACCCTAGGAATGGTCGGACCATCCTTTTCGGCTGACCCCTCGTTCTCGCCGGGATTT
TCTCCTCGGCCGACCAACCCTCCAACAACACCCGCTCCGGTAAGTTCCCTTCTTTCCCTT
TTGCTCGTAAATGTACAATAGAATTTGCGCTCAGTGAGTAATAGGCATGGATTGGATTGG
AGTCAATTCGATTCGTTTCGATCTGATTCTAATTGAATTAATTCGAATCGATTCGAAACG
AATCGATTGATATTGACCGATAGTGTAGGTGGGGACAACCTCAGGTGTGGATGCAATATT
GATAAGTGGTAGTTTCCACCTGGGAAACTGCCGCTGATTAGACACAGTTGCCAATGATTA
TAACACACTTGCCATTCATTATAACACTGATCATTGGCAATGCTTTGTTATTAACACAAG
TCGTCTTAGTTGACAAGATCGTGAAGATGGAGTGGGACCTATTTGATGAAGGATCACAAG
TCGTGGCTAGCACCGAGGACCTGATCCCGATGAATCCGCGGCTCAAAAGGGTGAACCTTC
CTAGCACGGTTACTACCATGAGCCAATGTCACATCCTTGGATTAAGCTAGAGTGATCATT
ATTATTAAGCTACAGTGATCATTATAATTAAGCTATAGTAATGGTCAAGATTAAGCTAAA
TGCTTTTACTAGATAGTGCCTGATCAATCTCTGAATAATATCTCATTTCAAATTCCCTTT
TGAAATTCAAAATTCAAATTATAAGTGAATTAAATATTTTGCCAAACATGAAAACTAAAA
TCATGTCTGGGTTTCAAATATTCTTGAGGTAATTATAAAATATAAAACCACATTTTATCA
AGTATTTTATTTCCTCAAAATAATTATAACAAAGGCCAAATCCATTATTAGATCCTCTTT
TTAATTATGAAAAATTTCAAACAGTTTCAACTAGCTGCCAAACTTTTTGTGGGAGTGCCT
GAAGATGCAATAGGAATATTGGACCAGATCCATAATTTACAAAAGCCATTTTGTTACTAA
AATAAATAAAAACAGAAACAAATAAAAAGAAAAAGCTAAAAGAAAAGAATTAAAAAGGGA
AAAAGGACAAGGGGCACTGTAAGTCCATAGTTCTGGCCCAGCCCACCTAGCCCCCCATCG
TCCTCCTCTGTTCACCAAAGGGGACGTTGGCGCGGCTATGGCCGCCAGCAGCCACAGTCG
TCGCCGTGGCGTGCATCCCATGGTTCCAAGGCCGTCGTTGCCATGGCCGACGTTATCCGC
ACGCTCTCCGGCATCCCCGTCCCCTAGGTATGCGCCAGAAGCACTGCGCGTGATAATGAT
CCAATATTCCTATATTCCTAAAAATTTAAGAATGGACGGACGTAGCAACACGCACCATTA
GCAATCTAGTTGTTGTATTAAGTCTAATATGCATGCTAATAGATTGATGATGAATGATTG
CTAAAGTGGTGTATTCTTATGAGATGGCACTCCCTAACAAAGATTTATTGCACTTGGCCC
TCCTCATACTATATTCCTAGCCCTGCCACTGATCCTAACCATGTACGAGGAAACAGAATC
TCCAATGAATCCGGCATCTTGGGGTACACGTCAAGTCTTTGGAAGACTTTCGTCTTTGCA
TCATGGGCCGCTCGACATGGCCTACTCCCAAGCCGACATAGTAGTCCTCAGTTCGACCCT
CTAGCCAGGACACCATCAGTAGCCCTTGAACCGGTCTTCAAGTATGCACCTTGCTGTATC
CGAGTTGCTCCACCATCTATTACCAAATTCTACTCTCCACCATCTATTACCAAATTCTAC
TCTGCACATAGCAATGCTGTGTCACGCTCTGCGAAGTCTTTCTTTGTTGTCAGCTGCCCT
TCAACTTGTGGTGGCATCCAACCTCGGACCAAAGGCGAAGCTCTCATCGGTAGGGTAACC
TGATGTACATGCATAATGCCTGATGTCCAAAAAAGGAAAACATTTTGCAATAAAGAGTTT
TACAAAGCTGTTCTAGCATCAGCGAGAAGATTTCTGGTCTGGGTTTACCATACATGTTCT
CTTCTCCTTTCTCTTCGTTGTTGATCATACCCAACATCAATGAATCAAACTTCTTCTCCA
CAAGCAACTCAAACACAGGAAAAGGAATAATAAGAAAACAACGGCGAGGAGGAGACAAAC
ATAACAAGGAAAAACAAAACTGTCAAAGTCTGTCTGTCTGCAACCAAGAGAATAGCTACA
AGTTGCTCATTGCTGCTGCTGCCTATAACTACATACCATACCAGATCATACCAGACCATC
AACCAACAACCGAATCCACTATTTCTATCATAGATCTGCCAACATCTTCGGTTAAATTGA
TCATACTCGACGACATTCATTATACTAAACTAGACTTCTTTTTAAACCCACGCAGGAGAG
ACACGCAACCAACCCAACCCAACCAACCCCTAGAATCATCATCCACTAGCTAGCCTAGGC
TGAACCTCCGCCGTACCAAACTAAACAATCTACATCGTTCACTCCCGGATCGAGTTGATG
TCGATGCCGCAGGAGCGCGACTCCATCTGCCGCATCATGCCCGCCCACCCGCCCATCATC
GCATCCGACGGCAGCTCCTCCTCTCCGCGGGGCATCGGCATCAGCGGCGAAGGGGCCTCT
TCCTCCGCCTCGCCTCCCACTCCACCTCCACCCCTGCCCCCATTAGCATCGCCGGTCTGC
TCTTCCTCCCCGGTAGCAGCCTCCTGTCCAGCCTTGCCCTTCCTGCTCTTCTTCGACCCC
GCGTACATGAAGCTCCCCACAATCACCTGCACCAACACACATAATCACCTGATCATTCAT
TTCTGGAACTCAACAGACCAAGGATGAATTAATGAAATACTGATGTTTCAGTAAACAAAA
CAAAGAAAGAGTGATCACCTGAACTGTCCCGGCTGCTGTCAGGACTCCACCAACGCTTCC
TCCAATAACCCTGTGATCAGCGCCACACAGCGCTATGCATAGCCCTCCATTCCGAGTGCG
TGAAACACCGTCATCTATAACAAGGTATGATCCAGAGAGGCACAGGATTTCGAATCGGCC
CTGTCAAAGATAATAGGGGATACGTGATAATTGGTTAGAGAGTGAAGTGTTAATCGTCTT
TCGTGGCCAATGCCACAGGTTATAAGTGAATAATTTCTTTACAAAATAAAACAAATCATA
ATAATATCCATAGTCATGAGTGATGGGTCTACAAACTGCAGGCGTAAAGAAATACCGCCT
GTCCTAGGTTGGTAACAACATATCATGACTTCATTTGAAAAGAATTGGCAGAAGCAGTCA
AGTTACTTGTACCAAGACAACAGAGCAGCAACGTACACATCAAAGATGCAGCTCCTAAAT
ACAGTATGAAATAACCGGAAGGAGAGCATTAAGATGACAAGTAATAGAGTGAAAAACTGG
CATTGCTGCCATTAACCGGAAGGAGAGCACTAAAATGACAGCATACACATCAAAGACTGC
CAGTAACAAAGCATAATGGGCCATGCCACATATAAGGATAATAGGTTCACAGGCACTCCC
AGGACCCAACCCAGATGCCTTAAGGCTTTTATCTTCCAGATTTCACAGGATGAATCTATG
ACATGACAAATAAAAACAAAGGCTGGTTCTTTGATGTAGGGTGTTGAATAGATGCTATTC
TGCTCATGTTCCAAAAATGAGAAGACATCTCGTATCCAATTTTACAAACAGATAGATATA
AGGCTTCTAGGAGAAGTCAGGATGTAATTGCAGTTCTTTTTGTAGCTTATTACTGGTTCC
ATTCTACCACAGCATATCACCATATATGGTTAGATTTTATACCTGATGCGCTCTGATAAA
AACATTCCAGTTCTAATGTTCATTGTGAAACCAAATTCTGTAAGTAACTGGTAAAAGTAT
GCAGGTAACAAAACAGATAACTCGGAATATTTTTTAGCACAGCCTCTGTTAAACAAGAAT
AGAATATAAGACACATAGATATCAGTCTCTGGGCCAGTGGTACCAACAACCATGAGAACA
TATATACCTCATATTTAACTACGCTGCCGGAGCCCGCATCCTGATGAAGGGTTGCTGTGG
AGACAGCCCCTGATGCTGACATGATGCAGACCGCCCTTGGGCCCTGTTGTGAGAAGGACA
TTATCCTCGCTGCGACATCCTGCACAAATAGGCACAGACACACTATAACTGTAAGTCATG
CAACAGAATGTGCATAATGCATAGAAAACTACATTATTCAAAAATAGTATTCTAGTACAT
TTAAGTCAGCATGTACCATGTGGAACCAGATTCAAGGGTTACTAGCCTAGCAAACAAAAA
CCATATATGATGGTTGAGGAACAATAGTTTCAATAGTGCAATGCAATTGAAGTTATGTAC
GATGGTTTTATCTTCAGTAGAGCGATTCAACCACGTAGAAATACCGTTATACACCACATA
GAAGAAAACATGAATTCACAAATCTGCGAATGAATGCCATTAATCTAGCTAGTTTGCTTG
CTATCCTAGATAAGGTCGGAACAAGAAAAAAACATGATTAAAATTGGAACACACGGGATG
ATGCAATTTTATCATGCAATTCGATTCGACCGTCCACGAACAAAGATGCAGCTACGACAC
TGAACTAGTACGATAGTTCCTACAATTTGACTCAATCCATCGTCCCACGGATCAGCACTA
CATTGATTATATTATCAGCACTACATTGATTATATTACCCCTAATCGGTGATGAAGCCAA
GATGGATTGCATCCAGAATTCCAGACAATAATAGCATAGCAGCAGGTTCATCTGATGGAC
CCAACTGAACTGAAACATAGCAGCAGAATAATACTCCTATAGCATTGCATCGAGATAACT
AGTCTGCGTGATGAACTGGCTAATCCATTGATGGGTGGGCTGAAGCAGCGGGCTGGCTAA
TCTGTAGTGAGATGGATAATCGGACGGACAGTCAGATTGATGATGCTACTCAGCAGTGAG
GAAGAAGAGCAGACAAAGGTTTGGGGCTTTTGATTTGGACCTCAACTCCGAGGTAGACGT
GCTTGTCGCTCAACTCGGCGAGCCGGGCGACCTCCTTGGGGTCGGTGAAGTGGGAGCACG
CGGCGACGGCGTGGTCGATGTGCTTCACGGCGAGGCTCGTCTCCTTGTTGGCCTCCCTCT
CCTGCATCCGAAACCAGCACACGCCAGTTTCAAAACAAATCGCGACGCACGTAGCAACCG
AACCCAAGATGGAAAATGGGGGGGAAGGAAAGCGCGGGGGAGATCTAAGCATGCTTAGAT
CCTCTGAGTCGCATGGGCAGATCTATCCACGCACGAAGCAGGCAGGCAGGCATACCGAGA
GAAGGACAAGGGAGTGTAGGCCTCGTCGGTGGCGACCTCCATCTTGGGGCTGCTCTCCTT
GGGGATCTCCACGATAAAGTGGAATGCCGATCTCCACGATAAAGTAGAATGCCCCGTCCC
CGACACGGAGCGGCACGTCGTGCCACGGGGACACCTTGCGGCCGCCGCTGTCGACGAGGA
AGACGCGGTAGTCGAGCGTCTCCGGCTGGCCCTGGTCCTTGGGCTTGAGCTCGGTGGGCC
TGAGGAGCGCGGTGGTGGTGAGTCCCGGCTGCTGGAATCTGCTCCCTTCTGGTAATGGGA
GGGATGGGGACAGGAAGAGGAGGGCACGGGAGAGGCCATGTGTGGCGGCGGTGAGATCCA
TGAGGGGAGGAGGGCATGAGGGGAAGGAGGAAGGAGAAGAGAGCCACGAGGAATCCACCC
CTCACCGCGTGAGGAGAGGAAGAAAGTAGGCGGGAGGTGGATGGAAAAGTCCAGGAGGAA
AAGGCTAGGGTTTTGGCTAGGGAGGTGAGGGCTGCCGTTAGATCCACAATCATCCGACGG
TCTTCGATGCATGATCCGCGTGCAATCCTCGTGGACCAATCAGAACGCAGTAAACACTTT
AAAGACATTATGACCATCTAAATTGGTCGTAATTGACTGAAACTACTTTTTCACAAGGAA
AACATTTTCTATTTTCGAGTGACAAAGATTTTTTTTTGTGAAGGACCTTTTGAAATGAGC
ATGAAAAATTCAAAAAATCAAAAAATGGAAAACCTTNNNNNNNNNNCATTATATGTGACC
AAGTTACCAAGACAAATTCAAAAAAAATCAAACAAAATCAGTTGAAAGCGGGTCAAATTT
GAACTGCAGCAACACCATAGTTTGCTTTTGATTTTTCTCAAAAATGATTTTTAGGTACAC
AAGTATCTATTTAATCAGAGAAACATCAAAAGTTTTCCAAGATTTAACCACTAGATAGGA
ACGGTCATACCCGTCATTTTGAACGTATTTTGAAATGGGAATGAAAAATTGAAAAAAAAA
CAAAAAAATGTAAAACATTCATATTGTGTCATTATATGTGACCAAGTTACCAGAAAAAAT
AAGAAACTTGTAATACGACATTTATTTTTAGAAAGTGTTGTCAAAACTGAGCTATAATGT
GTGAAGGTTGATGGCTTACATGCCAAATGACCAATCTCATACCGCATTCATGGCATAGTT
TGTAAAAATGATCTAATATTATGCACAAGGGTGCATGATGGAATGACAAAAAATGTTCAT
TAAGGAAGTATTCATTTTCCTTGCAGAAATAAAATCAATTTCCATTTTTCGAGTGCCCAA
AATGAATTTTTGTGAAGGACCTACCATATATTTGTTGCAAAA