Contig Data
morexGenes
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Map Locations of contig_56612 (5833 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_56612

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69558 1 1233 bp MLOC_69558.1 Available Available LOC_Os05g45030.1, FRAME:-3, EVALUE:1e-144, 13105.m04777 protein calcium homeostasis regulator CHoR1, putative, expressed





CDS Structure of MLOC_69558






Contig Sequence (5833 bp)

>contig_56612 5833 assembly3_WGSMorex_rbca.fasta
CCGCCGTTCATGGCGTCGTGGGGCTGGGCTCTACTAACAATCTTTGCCTATTCTTTGGGG
GGTCGCGTAGGAAAGTTTGCACGACCGGTGGTTCGTAGCAGAAGAACACGCGATGACGCG
TGTAGAGGGCCCATGTGAGTAATGTGATTCGGCCCACTTGCAACCAGAGCTTGCCTGCTG
TTGAAAAAATCGCGGAGGTTATCTTTTTTTTTTTTTGCAAGCTTTTCCTTTTGGCAAACC
GTGGAGCTCACTCGATAAACAACAACCGGATAGTCCGAATAAAATTTCTCCTCTTATTTT
GTTGGCCACTCTTATTTTTTTGGCCACAATGTTGACCGTCACGCCCAACTAAGGGCATCT
CCAGCCGTTGGAGCCCCTGAGAACACCACCAAACCAAAAAAATTAATGTCTTAAAGGGCC
AAATGCTTCATCCCATGACAATAGAGGTGCATGTGAATGACATCTTTCTAGCAACACCCC
ACCTCAATCAAAAGTTTGTGAGAGAAATGATTAAGTGGGTCAAGAAAAAGAACACGTGGG
GAGACATGATTCGTCGAAAGTTTTGCCGACGCCCCTAAGAGCCCCCCAGCGCGCTGGGTT
TTGCCTGGGTACGCTAGTGCTATTCTGACGCCCTGGGGGGAGGGGGCGCTGGGAGCGGGC
AGGGCCGTTTTCCGGCCAAAAAGCGTCACCGAGCCTAATATCGAACCTAAAAAAGATGTC
CTGGGGGGCATCCTGGGGGCGCGGGTGAAGATGCTCTAATAAAATGAACCTCGAGTCATC
ACTTTGCGACAAATAAAACAAGCAAAAAACATGATGATCAATGTAAAGCAAGTATAAAAA
TTACACGTCTTTCGATTCCAGTGCCACTTGAGTAACTCCATTTCTCCCCACATACGAGCT
GACTTTTTGAGGGAGAAATAGGCTATGTCTGGGATGCCCTAAATGGCCTATGCATCTAAA
GGATCTAAACCAGCATTTTGTTCAACGGAGTAACCGGTATAAACAATAACACAAAGCACA
ACATTATGTAAAAAAACATGCGAAAATGTGCATGCCACATAGCTAGTTTAACAAATGATT
TTAGGTTATAACACACATCATGGCTAGTGACAAATGCCGTAACAAATACTACTTCCTCTA
TATTTAAATACTTATAGTTGGAAAGAACTAACGGAAGGAGTATATCATTAACATGTATCC
CTCCGTTTCAAAATATAAGATTTTTTAGGGATTCCACTAGGAGACTACATACGGAGCAAA
ATGAGTAAATCTATCATTTAAAATATGTCTATGTACATCCGNNNNNNGTTTATAGTACAA
TCTCTAAAATGTCCTATATTTAGGAACGGAGGGAGTAATCGCGAACGTGTCACGGCCGGT
GACATATTTTTCAAGGAGCACGAGTCAAATCTTATAGTACTATCTTACAAGCTTCTGATG
CCCATGGCAGTGCCACTCATATCACACTGCAACAACACTACGAATAAGGAGAGTGATAGC
AAGCAAGCATCGACTCGACCCTGCAAATCGTGTCGTTTACAATCCCACAATGGCAGTTGG
TTCCTCCTACGTACCGTACCGTGTGTGGCTACATCAAAATCCATTCTCATTTCTCCATGG
ACCTAGCTGCCAAAAAATGAGCCCCTCCTCACACCGAGTCCAGCTTGTTCTGCTGCAGGA
ACTCGAGGTCCTTGAGCTGCCTCTGCGCCACCTCCTTGGACACGACCTTTGTGTCGGGGC
CCCTCCTCTCGCCGGAGGCCACCTGCTTGGCCATGGTGGACACCATCCTCTCCACCGCCG
GCCTCCCCACCGACGGGAACACCGCGTTCAGCATCGTGCACAGCAGCTTCTCGTCCTCCG
GCTCCACCATCTCCTGCCCGAAGCAGCACACGTAGATGGCCTCCAGCGCCTTCTCCGCCC
GCACCTCCATCGGTATCACCGGCGCCTGGCTCTTGGACTTGGCCCGTTTCTGCATGCATA
GCATACATGGTGGTTCATGCCGTGCGTCTTCTCAGGGGCCGGGGACCAAGTTTAGCACTG
GAATTGCAGAGAGTTGATGTGGTGAATGTTTTTGGGTGCTTTACCTCCCTTGCTATCTTC
ATCATGTCGAGGAAGGTCTCCTCCTCGTACTGGATGTCGTTGGACATCCGGAGCCGGGCC
ACGCCTTCCAGGATCTCCTCTGTTTTCAGCAGCCCGGCGCCAATGGCGGCCAGCCAGCAG
CACAGCAGGACGTAGAAGGGGTCTCCCACCTGCGCACGCGGCAAATCAGCAAGCAATTGA
CCGCCGCGGTTCGGAAAGGAGCCGAGCCGGGCATGTTAAGGTAAGAAGACGCACCTTGCC
GCGGCGGTCGTTGAAGTCGTAGAAGGCCTGGGAGTCCATGACGGTGCACTTCTTGCTGAC
GCGGCGCCGGAACTCGGCGAAGTCGACGGTGTCGCCGCCGACGCCGCCGTCGTCGCTCAG
GATGCGCGCCACGAGGCCCACCACGGGGAGGGCCCCGACGATGCGCCCCAGGATGGCCGC
CGGCGAGTTCGGGTCCGGCTCCATGTACGCCACCACCGCCCCATGGCGCCGGCGCCGGCA
GTGCTGCTGGGCGGGGGGACGGCAGGGCCGCCGGTGGCGCGGGAGGAAGGGGGAGGCGAG
CGAGAGCTTGTGGGCGACGGGCAGCACTGTTGTCCCCATGCCCATCGATGGGGTTTTTCT
TGGACGGCCTGCGTGTGGTGGGAGTGGCGCGCGCCTTATCTGCCCATGGTGCATGGTCGA
TCTCGCCTTCGCACGCAAAGGGTCTGGTGGTACAACGTTTTTTTCCCCCAAAACTAACCT
TTCGTTCTAGCTACAGTTTCAGATTTGCAAAACTTTCAATATTTTTTTTCACGGAAGTGA
TTGGAATCACCCGACGTATAACCACGCATGCGTCCGCCTCCGTGGCCGTTGGATCATATT
TTAATTAGATGACCAGAAGCAACGCATTACCTAGGCTGTTATTTTGCAACTTAGTGATTG
TTGCAATCTCCCTACCATAACTTGCTAGATCTGAATTTGGATCCCAGAAGAGCAACCATC
ACTCGTGCTCCTACCAAGCTTTCCGCCAAGCTGACTCTTTCTCGTGTCACTTTGATTGCC
GCTGTCGAAGAGGTAGTCGATGTGGGCACCGTCGCTGCCACCCATCTTCACCGTGAACGT
CGACGTTGTGGTGCGTCCAAACTGAAGCTGCAGCCCACCGTCCCGGGGAGCACCAACATC
CGTGTCCATCGCGGGGAATTGTGTCCGCGGTCGCCCCTTCGCCCTGAGGGAGCATCGGCC
TTCCTTTCGGTCGACTTGGCCGTCGCTCGCCGTCCGCTACAGCGAGTTTCTGTAACAAGG
TCCGTGTTGGAGAAGAAAACTGTAACAAGCCTTTGCTACAGAAATAAATAAATTCCAACA
ATACATTTGTTTAAAAAATTAAGTTGTAACAAGACCTCTGTTGCAAAAAACAATCCGCAA
CAAGACATCTATTGCAAAAATAATCTACAAGTTGACCCATGTTACAATTTCTTTCGCAAC
ATAACCCATTTTACAAAAAAAGTTGTACAACAGGACATGTATTGTAATGGTAGAAGGTGA
CCGTCGGTCGCTCAATCCTCCAGATTTGACAGCTCACGAGACCCTTGGTCGCTCTATCCG
TCAGATTCGCCGGCTGACTGATACGTCCATTTTGCATCATGATTTCTTATTAATATTTAA
ATTATTATTACTCATTATTCTACTTTATGATACAATTTTTATTCATTTTCTCTCTTAATT
TACAAGGTACATCATAAAGAGGGAAATTGTCGAAAACTGAAATTCTGGACATGAAAACCA
AGAAAAATGCTGAGAATTCTATGGACTGTACATGACCTGAAACATCACAAGGATTTTTTG
TGAAATATATCTAAATTTATGGAGCAAAGAAGTGTCAGAGGGGGCCCACCTATGGCTCCT
AAGCCAACAGGGCATGACCACCCCCCTAGGCGCGTCCTGATGGCTTGGGAAACCCATAGG
CAGGCCATGCCCCCCTCTTCTGCTATATGATGTATTCTGGCCTAAAAAAATAAAGATGAT
ACTTTCAGGATGAAGCGCCGCCATCTCGGGGCGAAAACCTGGGTAGAGGCCCTTTTGCTC
TCCGGTAAAGTGATTCTGTCGGAGAAACTTCCCTCCGGGAGGGGGAAATCGAAGCTATCG
TCATCACCAACTCTTCCTTCTTTGTGGGAGGACCAATCTTCATCAACATATTCACCAGCA
CCATCTCATGCCAAATCCTAGTTCATCTCTTGTATTCAACCGTTGTCTCAAAACCTCACA
TTGGTACATGTGGGTTACTAGTAATGTTCATTACATCTTGTAGTTGATGTTTGTTGGTTT
GTTTGGTGGAAGATAATATGTTGAGATCATTTAGGATATTTATTATACCTTTGATACTGA
ACATGGTGATGATTTGTGAATAGTTACTTTTGTGCTTGAGGACATAGGAGAAGTCTTGTT
AATGCCAACTACATAACACTTCACCATACTTGGGCCTAAGTGAAGACATTGTGGAGTAAT
AAGTANATGATGGGTTGCTAGGGTGACAGAAGTTTAAACCCTAGTTTAAGTGTTATTTCA
TAAGGGGCTGATTTGGATCCACATGTTTTAGGCTATGGTTAGATTTATATTAATTGTTCT
TTTGCAGTTGCGGATGTTTGCGAGAGGGGTTAATCATAAATGTGTTTCTTGTTCAAGTAA
GAACAACACCTTAGCACTAGTCAACCCACGTACCAAATTATCAAAATAACGAACGCGAGT
CAACTCAACATGATGAACATGACTTCCATGCGTCCTCGAGAGTGTTTTTATTTATATAAG
AGAACTTTCAAGATTTTCCTTTGCTAGAAAAAGGATTAGACCATCTTGCTGCACACTTGC
TACTTTTGTTATTTGTTACTTTCTACCAATTATCTTGCTACAAAACTATTTATCAGTGTT
ACTCACAACACTTGTAGAGAATACCTTGCTAAAACACCAGTAGAGAAAAGCCTACCTATG
GCGTGGCAAAAATGACAGTGCTGGCGTATACACCCGACGCCACCATATCGCACCAGGGTT
CAAAAATAGTGCTGGCATTGGAGTTGACACCAACAATATTTGACATGTTTGTGGCGTGCC
ACGTGGCCAACACCAACACTAATATTTATGAGTAGTGTCATTGCATGTTAGTGTGACATC
AGCAATTTCATTTTCATATTTAAACCAAATTTATACAGCATCACGATCAAACAAAATGAC
AATATAATCAAAGTTTAGAACATTAATGAAATAGTACAATTCAAATACCAGAGTCTAAGT
TCAACAATACCCATTTTTTCACATTATTCAGAAAAGTATGAAAATTAGGCAAACAACATA
AGTCTGCAATTTCAACAAAACAGGAGGTGGCAACCTTAAAACTACTAGCTAGCTAACTCA
ACATTACTACACACAGAGTCAGGATCATAATCTGGAGTAAGTGGACCATCATCATCACTA
CCATTAGGCTAGTTCTACACCATGATCTCGTCACGATCGTAGGCAAGGTAGAATGTGACT
CCAGTAGTAAAAAACAGACCTTTCATCCGCAACATTAGTCCCGGTTGGGTTGCGGACTAG
GACTAATGTGATGGGGCCTCTGCGAGCCCCTTGTTGGGGAACGTCGGATGGGAAACAAAA
AATATCCTACGCTCACCAAGATCAATCTAGGAGATGCAAATCTACGAAAGGAGATATTGT
ACCTAGATACCCTTGTAGATCGCTTAGCGGAAGCGTTAAGAAACACAATTGATGTAGTCA
AACATCTTCGCGA