Contig Data
morexGenes
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Map Locations of contig_56560 (6452 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_56560

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69523 5 2835 bp MLOC_69523.2 Available Available LOC_Os07g03070.1, FRAME:-1, EVALUE:1e-87, 13107.m00242 protein tetratricopeptide repeat containing protein, putative, expressed





CDS Structure of MLOC_69523






Contig Sequence (6452 bp)

>contig_56560 6452 assembly3_WGSMorex_rbca.fasta
ACAAATGGGTCCAGACGAACCGGGACCAATGCCCACGAGGCACCGGCCGGCCCCCTGGGC
TCATGAACCGGGTCTAATGCCGCCCATGGGTCCCCGTTCGTGAAGAACCGGGACTAATGG
GCTGGCCAGGTCCGAACCGAAGCCCTGTTTTCTACTAGTGAACTACACAAGAGCTCTTCT
CTTCAGCAATCCTGTCTTACATAAATTATGGAATAATGTGAGTAGTTGGTGTTAAATGAA
TAAGTCTATTTTCATGATCATGCTATAATGATTAAGTTTGATCATTTAAGCATTTGTATG
CATCTCTTCCTGTTGCTATTCCTTTTTTCCTAACAAGAACACTAACATAGTCGTTGGTTA
GGGGGTAACTCAAATGGCAACAAAAGAAGCCTAGAAGTACTGTAAATAATCTTGGGGTTG
TAGGCAAAGGCTTCAGATGGGGTAATGTCAGGTCCCTGCTGAAGCTTCTCTAAAAGAGGC
TTGCAACAGATTGTTCACCATCTGTGAAATGTGGTTCAGCTAGATATAAAGTTTTGAAAT
TGCCAAGATATGCTTGAGACATGGTATTAGATGTTCCTACTGCATGTTCATGTTGCTTCA
ATGGTCCATACTCATCTGTTGATGTGTATACAAGTTGCTAGATAAGTTGCTTTTTTTATG
TAACATTCATGTCGAGCATATTCTGTCTGACTCTATTCATTCTGCTAGCATGACATGCCT
TTTGAAGGAGTTCAGTTTTTCATATATATGTATATATCTGATGTACTAACATCTTAATCT
GTTGCTATGTGTTGTTAGTGCTATGCTGATGGCCGGTCCAGATTTTCATCGGTCGTCAAT
GCCTTCAGTAGGATTTTATTTTTCTCTACAGTTGGGAAACACTTTTTTCATTGGACAAAA
CTTGGACAAGAATTAAGACGCCCTGAAGAAGTCAGATACGAATGGTGCTCAGACTTGGTC
TGAAGACATTGAAACAGTTCAGGGTGTGTTTTGTTGTTCTGTACAACGGCATTTTGATCT
TGTGAGAAACACTTCATTTTTGAGACGTACGATAACCATCATCGACATATTTCATCAGTT
TCTGAACTGTTTTACATGTCCATATGAATCCGTTTTTTATACTGTTGGCGGCAGTTCTCT
GTTTGTGTTTAGAACGTATTTGTGACGGTTTGAACGTTACATCCGTTTGAGTGACAAGTA
GTATAAATTGAAGGGTGTGGGTATAAAAATACGAGTATGCACGATCAACGTTTAGAGAGC
TAAAAAAATGTTAAGGTATATTTTGGACGTCCTTGAAAAGAACATAGACGAGGCTCAGTT
TGAGCCACGCAACGAAACCCCTACCCTCCCCGTTCCAGAATTCAGATCAGGCCACTCCGC
GTCCTGGCCGCCTGGATGGCGCGAGGGCTGTGGATGGAGGAGGCCCAGAGCCTTGTGGAG
CAGGCCGCCGAGGAGCCCATCTAAGGCCCAGAGCCTCTAATACTAGACTAGATCCCATCA
GCTTAATTCATTCTAGTTCTGCTGTGCATATGTTTGCTCAGTCTGCCAATTAATGTTACA
GCCCTGTAATGTTCCCTGTAATGTGTTACTTGCTGCACAGTATTAGCATCAAATTGATAT
GCCAACTCCTCTAAGAGTCATATAATGCTAGCTGATCAAGTAAGGCAGGCAAAACATATA
GTAGTAATAAATTAATATGAGTTTTGATTAAGAAGTATTACTCCGTCTCAAATTAATTAT
CTTAGATTTGTCTAGATACATATTAATTATCTAACACTAAATTCGGGGCAGAGGCCAAAC
ATATGTGGACAGTAAAGAGCAAACAATGGAAGGTTTATCAGAGCACGGCAAAAATTGCAG
TCCGATGAGTATAGCACTGCAGAGAGCCACTGATGATCCATCGGTTATTGTGTGCTAATG
CTAGGAATATCTAGTGACCAGATCAAATACTGAATGACAGAAACTTGTATCTCCCTACTT
GCATACAGTTCAACAGAATAAGCATTGATCATGAACAGACTAGTAAACATCTTGGGAGGG
CATTCCAGGCATATCTTGGCAGTTTCAGATCTTCTAACTAGCTGCTATCACATTTCATTC
ACGGATGGTGAATCATCTGCTGCAAGTCTCTTTGGAGAAGGTTCGTCCGAGATCGGCTTG
TCAACATTAGCTCGTTTCATGTCTCTGCCAACAATCACAAGCTCAGTTACACTACCTCCA
GTGCTTCCTGTTGCTGCTGCTGCCGTAGACATAGTTGGGGAATGAAAGCTGTTGTTTGAT
CCAGACGTCTGTGAACAAGTCAAAGATGCAGCTCCTGCCACACCACGGCTAACATTCTGC
TCATGACTTGTCACTGAGACCACCCGCTTCTTATTATGATCTATGCCATCGTTTGGGGTT
GACATTGCTTGCTCCAGTTCTTCAAGCTGAACCAAAACAATTAAGAGAGATGTCATTATT
ATTCCTCACAAAGCAAGGAAAACGTTCTTCTTCGTTCACAGAGCACTACTAGATTCATGA
GCAGAACCAAATTGGTAACATGAGTAGAATTCAGTTTGTTCACCTTCTTCTGGAGTCGAG
GCAACATTCTAGCAAGGTAAGATATCTCATCTTCTAGAGTCAACTTCCCTGACTGTCCTT
TAGCAGACAACAAAGCTTCCTTGGCATTTATCAGATTATGCATACACGACTTGCCTACTG
AAATAGCCTTTGCACAATATGGGATTGCATCCCCAGCCTTTGATTCTAACCCGAAGGCCA
AACTAATGCGGACGTTTCTAGAACTGAATTAAGGTAATCAACAAAGGATGAATTGAACTC
AAAGTCCAAAGATTTGGACGTTTCTAGAGCAGACCAGCATTATCTACCTGAGATTTTTCT
CTGGTGATCAAATGTACACTTACATGTGGATTTCAGCAGGTGAAGGCACCCGTGCAAGAT
TTGGGTTAACTCAAATTATTTAAAACCATACACTAACATGCTGATTTATACGTCAGACTA
AATTCACAATATTATCACCACAAGGAGGATACTGCTCGAAAATTCGAAAATTGTCAGGCC
TAACCAAATGTTCCAAGATCGCTAAAGCTTCGAAGTAGTAACCGATTGCGCTGTCTGTGT
CCTCTACAAAAGTGAAAATCAAATGTGAGGCCTTGAATGACCATTCACCAGTCTTACACA
CTAGTAACAGAGATAGTTGAGGTTACCTCTTCTCATGGAGATTTGAGCCAGAGAATTCAA
TATATTAACCTTCTCCATTGTCTTGTCTGGACTCTTGGCAACTATCACCTTTGCAGTATT
CAACATTTTCCAGGCCAAATCCAAATCAGAATCATCTCTATCGCCTGTCATGTTCCCATC
CTTCTGACCTTTGCCATGCAAGTTTGCCCCTAACCAACGAATCTATCAGCATTTACCATT
GAAAGAAGAAAATATTTTTTTTCTCTAGAAAATGGAAGAGTTTTATTATTCCCGGCCTCT
GAATCGAGGATGCACACAGCCCAAGAAGAAACAAACAGCAATGAGATGCATACAAATGCG
TACAAGATCCAACTTACTTAGTATACTGTGATCATATAATATTAGTAAAAACATTTCAAG
TCCCAAACTATTAGTACTTTGCATTAGCATTGGCAAAATACTCATTAGAAGTTTATCAGG
TATACTCTTCATTAGGCATGAACAGACGATGACAACTTAATGCAACCAGTTGTGTTATCA
ACTAGAGTATATAGATTAAAAAAGGATAATAATGTCTTTCAGTGTATCAGCTTTGCTTGT
TGTGGATGTGATTGATTCTTCATTTGGTGCATGCTTTGAACCACTACCTGAAGGATTGGT
CGCCTTCCGAGCTTTAGCTAACAAGGCACATCCATAACAGTAAAACGTGCTAGCACACTG
AGGAGCAAGGTCTCCATAATGTTGAACCCTACATGACAACAACAATGTGTAAATTAGCTG
ATGCATCATCATCAAGGTTATAACATAAACATATCTGAAGTAGAGCAAAACCATTTTAAT
GACTTTCATAGATTATGAAGTACAAATCTGAGGAAGAGGAACCATATAAATGAACTGCAC
AGCGATCAAATAGGATAACACCTATCCCTCAAGCACTTGGACTTTGATTTAATTCTCACC
GCATTACAGACATCACAACAAAATATGCTATACTCCCGGGTGTTGTTATCAGGTCATATT
GGCTAACTGGACTCACTAAACCACCAAACACCAACACCCACGACGTCATGCTCACTGTCA
AACACATGAAACCAAAACACCACACACTCGGTAACCACATTGTCGTAGAACATCTTAAAC
CCTACTCTTAACTAGCTACAAACGTCAAAAGGCTCAGAGCCACTATGCACATGAAAAGAA
CAATGAACTAACTGGAAGTTTTTTTCCCCGCAAACTATCAATATGTTAAGCTACATCAGC
ATGTCTAGCTAGGAGAACAAGTGGAGTTTGGGAGTAGAAACCAAACCTGATCTTGAGAGC
ATCTCTGAAGCAGTTTGCGGCGTTGGCAAAGTCCTTCTCATTGATAGCCTTGCACCCCTT
ATCAAACAGCACCTGCGCCCATTCTAGTGATTTCTCCTCCCATGCCACTTGCTGACCACC
CCTCCTCAGTAGGTTCAGCGGCGGTGCCGCTGGGCCGTGGTGTTCACCCCCTGGCACTTG
GAGCCTAGAATGTGGAGTGTAGAAGCTGACAACTGGAATCAAATTACAGAAGCCATGATC
ATCACACACCTTTTCCCCCTGCTCCGACTGCAGCTTGATCATGAAGAGACTAGAATCAGT
TTTCACGAAAATAGCGTTTGCTCCCTCCGCAAAGCCCAACACTGGAGAAAGACATTCTGA
ATCGACACCAATTGGGAGCACATCAAACAGGTCGACAATGCGGCTCAGCACCCATCGTGC
ATTAGTGCCATCACTCGCCTCCCATTTCCACAATATGAGCTCCATATCAATGGCTTCGGC
AACCCCCAGACCACCGTCGTCCACGAGCACGAGATTAAATCTTTCTTTCTCACTGCCGTA
ATCGTCAGGTGGTGTGTTGAACACAGACAGTTCAGGACTGTCCAAATTGTACTCCAGGAC
CACCCCACCGTCGGACAGGAAGTAGAGCAGAGATCTCCCAACCAGCACGCTGGAATGATA
CTCGAATTCCATTGTGAACTCGTCTTGCCTCGAATTCGGCTTGCCCCACGTGCCAGTCTC
CGACGAGTACAAGCACGCCGATGTGATAACGTGCCAGTCTTCTTCATCTTCGCTGCCGTC
GACGGCGAAGACGAAGACCACGCCGAAGGGACCTCCCGCGCAGTCGCGGTGGTCGCACCC
GTCCGCTGTGCAGAACACGGCCGCGGTCGGCCACCCGCACCTGAACGCCGCGGGCAACGG
TATGCGCTGATGGGCGCCCGTGATTGGCTCCCACAGGAGGATTTCCTGAGTTTCCTGGCG
GTCGTCGGAGAGGAAGAGGGCGCGGCCGTGGCGGCAGTCGAGCGGGCGCCAGAACCGGCG
GTCCGGAGCGGCGAGGGAGAAGGGCGAGGGGGTGGTGGGGACGAAGTCTGGGATGCGCTT
GTTTTCCCAGTCGTGGAGGAAGCCGAGCACGGGGGGCGCCCGGTGGGGGTGGAGCCCGAT
GAAGCGGCGGCGGAAGTGGGGATGGGTGACGACGCTCCTCCAGGCCTTGCAGACAAGGGA
GGCGCGGAGGAGGCTACCTGGGTCGTCGAGTGGGAGGCGGAGGAGGATCTCTTCGACGAC
GTCGTCCGGGAGCGCCGGCGGCAGCGCCGGCGGCGGCGGCGGTGCTGCCATGGTGGCCGT
TGGCTGGGTTTGGGTGCGGGTGGGGAATGGTTCGGCTCAACCAGCCCGACGCTGGCCACG
ATCGATTGTTTTAGTATTTTTTTCGGTTTGGGCTATTTCCCCTAGTGAAGCCTTGGGTTA
TTTTATCTTAGAGCAAGTTCAACCGATCGACTTAAATGGATGACGGTTTTGTCCGTCTTT
TATCCGTTTGGGTCTGCCATCTGTTTTGAGTCGGTCTGTTTTTCTTTTTAGGTCGATCGC
GCGTTCAACGCTAACAACTCATTTTATGTTCGCACTTAGATAAAGCAGGCCAGCATGCCA
ACGCTCAAGAATTCATGTCGGCATTATGTCAGCGGTCGGCATACATTGTCAGTCTACATT
AAACCACCACGCAGTTCATGTTGGCACACTTGCCAGCAACCGTCACACATACTAGCACAC
CAAATTCGACTACATCATGTCGCTTCGTGGTCATGCGAGCACACTTGCCGGCATACAAAA
AAGGTTTCATTGATCTCCATCGCAGATCACAGCTGATCGAACTTGAGCATTTCGGCCTAC
ATCTTCTCGAACCATAGCCTCTTCCTCGATGACACGGTGTTCAAATCAACCTTCATGATC
TCCGCTCCCGTCTTCATGCTTGCGAGGGCCAC