morexGenes - Barley RNA-seq Database

Contig contig_56526
Source Contig contig_56526
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56526 (7530 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_56526

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69507	1	438 bp	MLOC_69507.1	Available	Available	None
MLOC_69505	1	1947 bp	None	Available	Available	None
MLOC_69506	1	2326 bp	None	Available	Available	LOC_Os03g11614.1, FRAME:-1, EVALUE:2e-25, 13103.m01314 protein OsMADS1 - MADS-box family gene with MIKCc type-box, expressed
CDS Structure of MLOC_69507

CDS Structure of MLOC_69505

CDS Structure of MLOC_69506

Contig Sequence (7530 bp)

>contig_56526 7530 assembly3_WGSMorex_rbca.fasta
TTTTATAAATTAAGAGCGTGTGCCGTGTGATATTTTTTTCTCCCGTTGCAACGCATGGGC
CCTTTTGCTAGTAGAACATAAAGGCATTTAGGCCGAACGCATATAGGAAAAATAACTCTT
TACGTATCCTTCCATATCTTAATGCTTCTTCAACATCTTGGATGGTATATATAGGCGTCT
TCGTGGAAGCAGAGTGTCTCTATCTTACACTATTAGACCTTCTACTAAATCTACCACTCG
TGAAAGGTTCAGATCTAGGTCTTGTAGTGACTCCCCTGCTAATCATATCTTTTTTCTTCT
TCTAAATTTGCCGTTTCTATAGAGATATTTTTTTTGTATTTCTTGGACTTAGCATCTCTT
TTTGTAATAAACTTATGATTTTGTGCAGCTTTAGTTTGTATAGGAACTAGATTCTTTTTA
TTTCATGCACATGCCATGAATATGCTAACTAATGCAAATTTAAAACCTCTTCAAATTTGT
GATCTCAAAAGGAATCTCAAGGAAAAGCTCCCATTATTGTAAGAAAATTCTTCCCATCTA
TATTGAAGCTCCTAAGCTTGTAACGTCCTCTCTTTTTTTCCTACCTAAACTTTATATTAC
CTTTTGTGCTCACATGTCTCAAACTTTTTCGTAGTGAGAAAGGCATGGAGTCTTACGGGC
TAGCATCATAGGTTGGTGTGCTAGCCTCAAGTGCTGAGGTTCGAGCCTCACTTGTACCTA
GTGTTAATTTGAGCATTGTTCCTCCTATGCGTTTTATATTCATGTGCGAAGTTTTGCGAT
GGAATTATGACTTCTGTGGTATTCTGGGCAAAGAAAAAACAAAATGGATGAGAAATCCAT
GGAAGTCATTTTCTCATGAAACTATACATGAGTATAACACTATAGACCATGTTTAATTTG
TTGCCATTTTTTTTTCAGAAATATTTGATTTTTAACTTTTTTAAATTCAATTCATATTGG
GTGCACATAGACCCAAGTTCCAAAAATCTGCACCTTGAAGTAAGGAGGGCCAACAACAAT
TTTGATCAAATCAAATGGCGAAGTATTTATATTTCGTCACAATGTGCATCGACTCTAATG
TTTACTCATGCACATACTACATGCATGAGTCCATGTAATGTTGCATCCGATGCTGAGCTG
CTTGACTGGACTTGACAAGATCTGTGATGGGGCATTTCACTGGATACCCGACTCTGCAAG
ATGGAGCGGGAGCATAAATGACGGTTCGGCAGTCAAAGTGGGCAGTCGACTAGTTCTACA
CGGGGCTCGATGAAGAGAGCTTAATGGAACAGTACCATGCACGATGACGTATCTCGTCAC
CTAACATGGTATGCACGCGCAGCAAGGTCTTGGGGTCACGAGATTGTAGTTGTTTCGGAA
ATAATGGAAGGGCCGTCCTCATGGCCGCTGCCTCATGTGATCGACTGAAAGGGATCGCTT
TATTGGTGTTTAATCTTTTGGCAAAGACCTTTATCTAGCAGCAGTATATGCTACACCCGA
AATCTATCTGCAAAGGACTTCATCGATAAATAATATGCACTCCCTCCTTTCGTGAAAGAA
GGCATATATCTTTTGGCTCAAGTTAAACGGTGCAAAGTTTGGCCAAGTTTGTAGGAAGAA
CTATCAACAATTACAATACTACAAAAGTTTATTTTACCATTGATTTAACGATGGTGATTC
GGTATTACAGTTGTTGATTTTTTTGCTAGAAACTTGGATCAAGTTTTGTACCGTTTGACT
TGAGCCTGTACTTATATGTCCTTCTTTTGAGGAACAGACAGTACTATGTTGGGTCTTTGC
CAACATATATTCTGAAAATGATATTTGTGTGTTTTTAATGTTTAGATTACACATGATATT
ACGTTACTACGCCCTACGTCACGGTTTAGAAGACGTGCTTGGATATTGTCTGAAACCTAT
GTGGTTATTGATTGGTTGTGAGATTGGCTGAAAAGTAGCATTCACACTACACATGCACAT
AAAAGTAGTACAACAGAATACTAATTAGCTGTTAGGCTTTCCGTAATGGTGGTATCATAA
GTAGTATCATGCATGNNAACTAGGCAATTTTGATGAGGTGACATGAAATTAAATGAAGAA
ATAGATGATTGAGTATCATATTATGATACCGTATCATATTAAATGATGTGTTGTTATGTG
TCATGCATGGTAATAAATAAGCCATCCTATGATACTAACTTATGATACTATGCACTACGG
ATGTAGTATCATACACTAGTANNNNNNNNNTGATACTAGTATATGATACTCTCCATTACA
ACCAGCCTTATGAGTAAATGCAATGCGCCTTAAACTTTGTCTATTGTGGAAATGCACGTA
AATTTCACCGTTCCTTTTAAAATGTGACGGAGGGAGTACTTTCTTAATGATTCATGGCTC
CGCCACTTCCTAAACACAAGCAAACAATAAATTTCACCATTCTCCGTGGTGTCATTAGAG
GAGGAAAATATGTTTGATTTTCTTAGAATGAAATAGAAAATAAAACTTCAGATCTCTGTA
CACTCTATAGTCTTGCATGTAAGTTATAAATCACTCCAAAAAAACTTTTGAAGGCCAACC
AAAGTCGTCAAATAATAGAGTAAACTCTATCGGGGGTCATATATTTGCTACAAATGGCAA
GTTGAAGCAGAGTCGAAGTTGTGTAAATTTTAGAAGGAAATGCAACATAAACCTTCAAAT
ATGACCACTTTAGTCTTACATGGAAGTTGTGTAATCACTCTTAAAAAAGGATGACCAACA
AAAGTTTTTTAGGAATAGAGAAATTCCACCGTGGATCATCTATTTGCTACAAATGGTTAG
TTGAAGCAGATTTAATCCTTATTGTAATTAATATGGATCCCCACTGGCCATTGACATGAT
TTTCTTTTATTCATTATTGAAAAAGAGGGTTTAGCCCTGGCCTCTATGTATCAGATAACA
ATGCACACAGGCACAGCCATATATTATTAAGTTCTGAGTATTAAACATCCACAGTAGCTT
AAATAAAATAAAAAAAGAAGAAGAAATGGAAGTTCGGGGCAACTAAGCTCGAAAAAGATA
AAATGACTCATTCAAATATCCTATCGATGGATCCTTATTTCCCCAGGCTAACTGAACGTG
GCACAACATATATGGCTATATCTACCCACAGTTTACTTGAAATACGAATGAAAACCAACC
CAGAACATATTGTCTTGCACCAAGAAGCTAGCTTGGAAAGCTACCAACAAAAACTTGCAA
TCAATAAAAAAAAAAAATGTCTCGCATGCAGGCGTATAACTCAAAACACGATGTATATTA
TCAGTGAATCTGTAAGTTCTTCACATGGATAAGACCACTACCTACCCCAATCAGTATATT
GCATGCAAAGCTGGGCTGCTGTTTTTGACTTGACGTGAAGTTCGATCGAAGAGATCACTT
GGCATCTGACGTACGTACGGTTGGGCAGTCAGAGCACACAGAACCGAGTAGTTCTACACG
GGGCTCAATGATGATGGGTGGGGTTTTTGATTGGACAGCTGCTATACCTTCAATGGAACA
GTAACAAATGGAGTAGTATGTACTATGTATCGCCCATGTCTTATAATTTCTCAACGCACA
CATCCTAAACGAACAAGGCACCAAACGGAGTATGCAAGGAGTACTTACCACTACCAGTAT
GTGTTAATGATCAAAACAGGCTTCTAGCAGTACGTGCTAATTACATGGGTATGTACCGGA
TTGCTGATTAGTGGACAAAGTGCACGAATGCACAACGGATCTGGTAAAGAATAAATGGGA
AAGGCAAGGGCCAACAGAGCAGAAGCTCGATGTAAGGATGGAAGCAGGTGGATGTATCGT
TTTACTGTTCTTGCCCATTATAGCAAGAGATCCAGGAACAAGCGTTTTCTTCTCCTAGTC
CTAGCTAGTTGATGCTAAATCGTGCACTTCATTCCTTTACTGACAAGCAAACAATCTGTT
GTCAATCTATCGATCGATGCAGTTAGCTTATCTCCATCAATATTTTTTTCCAGCAAATAA
GAAGAAAAAAGGAGGTTTATTGGAGCCAAGAAATAGAGGTTTGTTTCGCTAGATCTCGGT
GATCCGGGCGATCAGGTGAGACCGAAACGACGGAAAAGATGAACAGATAGGGTCGAAGAA
AGCTAATATTAACAAAAGAAACAAAGATCTACAAAACAGGCCGCCCAAGCCAAAACGATT
TCCTCATGAAGGAAAGCTGCGGCAGCGCCACCACTATACGCGCGAAGCCGCGAACCCAAA
GAGGAAATTAGATTCAAGGATTGAAACTGCATCGGTTCCATTAATCGGCCCAAACCGGGA
TGGGTTTACTTCTAGCTCCTATTAGCGTTGTTGCTGTTGATCGATCTATGCTTGCAGTCT
GACACTCTGGCGAGAAACAGCGAGTGTTTGTTTAGTTATGTACCATGAGGAGCTTGAGAA
CTCGAAGAGGCGGCCGCGGCCGGAGAAGATGATGAGGGCGACCTCGGCGTCGCAGAGCAG
CGAGAGCTCGTAGGCCTTCTTGAGCAGCCCGTTCCGGCGCTTGGCGAAGGTCACCTGCCG
GCTTATCTTGTTCTCGATCCGCCTCATCTCCACCTTCCCACGACCCATCTTCCTTCTTCC
TCCTCCTCCCCTCTTTCTTTCTCTCTCTCTACTCTCTAGGTCTCCTTTTACTTTACGCAG
CCAGCAGAGCGATGTCTGATCATATGCTTGCTCGGTGCGCCTAAATTAGCTCGGCCACCC
GTTTGCGTGTGCTCCCTTCCCTCGGGCTCGGCCGCTCGGGCACTGTAGCTCTAGGGTGGT
GGTGGTGGGGCAGCGGGCGCGTGAAATTACTGATGAGTCCCTGACTTGAGGTGAGATTAG
TTCGTACCGACGCACGAGCTGTGCCCCCTCGCTGACGACGCAACAGTAGGCTACTAGCGA
CGGATCCAAGCCATGGGGAGGCGAGGGACGGAAGCGTCGCAGTAAAGGTGGGACGAGCTC
ACGCAGCCGAGCTGGAAGATTGGTACTGTAGCTATCGATCCATCGAGGCGGAAGAGGACG
GGTGGCACGTGTCGACGAGCGTGTGGAGGAGCAGACGAGAGAGTTAACCAAACCACCAGC
ACGCACTGGCTCGCTGGTCTGCTGGGTAGGGCTTCGGTCGTAGCACTTCGCTCGTAGGGC
ATCATCCCTTTCCTGTCACTCCCTTTATTTCCCCTCTCGCCCTAGCTCTAGCTCTAGCTC
TTTTGCTGCTGGTCGCCAGTGAGCATGTTAGCTGTTGCTTGTTTCTATCGCGGGAAATAG
AAGGAAATAAAGGCACGGAGTGCTTGGGAACAGTAGCTTGGTTATAGGTGTACGAAGGAA
TCTTGGTTCAAAAGAGGGGAAACTACTCCCTCCGTTGATAGGTGTATATATATAATAAAT
ATGCCTCCCTGGTTTTATTCCTACATAAACCGAACCAGTGAATTAGTTTCAGCACTTAGT
TTTACACTCTTTATCCAAAGATAAGGCAATAATTATATATATATATATAATTATATATAT
ATATATATATATAATTATGAAAAGATCCAGATCCGTTATGAAGTTTATCAAAAGTAGAAA
TCAGCTTAAACATAATAAAACTAACATCGAGGTCTGCATCGACAATAACTATTGCCGCCA
GAACGAGATGCCGACGCACCGCGTTCGTTGCTCCACTACCAAAGGCACCTTAATTATCGA
TGACGCCAAAAATCTTTTTGCACGTGCCCCTAAGTACCTACTCATCATTGAAACCTAGGA
TATATCTGAGAAGACACCAGATCTCATCATCACATACGCACGATGGAAAACTCTAACCTC
GTTGGCCGAAGGAGATGGCTGGAATCTACGTCGGAGCTCCATCAACTATGTCCAGATGAA
CTAACTCAAGGAGGGCCAGAACCTGGAAGACAAAGTAGAAGAAGAAGTGTCGCCATCTGT
CCGAGAACCCCACCTGCGAGGACTGAAAAAACGTATGTAAACTATTAGCCAAAGCAAAGG
CACCGAATTCCTCTCCCAGCACCAGCCGCTAGAGTAGCAGAAAGCGAGAAGACAAATCCA
CGGACATGCAGACAAACTCTGGAAGGAAGATTTTGCCTTACCGAAAAAGTCTTTCGCCCC
ATTTTATAAATAAAGCAAACCACCGAAGCACAACATCCAACAACAGACACAACACACACA
CTCCACACACGCAAACGCACGCCACCACCACACACACTCAAGGCAGGATACATAGGCGCT
GAGCGCAGCAACACCACTCCTAGCATTACCACCACGAAGAGATGAAGCCGCATACGATGA
ACCGTGGACTCCAAAGCGGCGCCTTCAGGAAGGTCACGACATCGAAGCGCCGCCACAGCC
CGATACAAGGATCGAAGTTTCACCTGGAACCGCACGATGGAGAGTGAGAGCCGTTGCGAC
GCCTTCAAGAAGGAAACGAGCTACGCAGCCATCGGCCCATCCGAATATAGAACAGGTTTT
CACCCTCGACAACACTCACCGCCAACGAACGCCACACCTCGGTTACCACGCCGCCCACAC
GGCCACGGCCACCGGGCAGCACCAAGCCACGGCCTCCGCCAAAGAGCACAGCGCTACCAC
CACCAGAGCACCACCCCGACATTCAAGACCTTGACACCACCTCACCCGAGACCCGACGCT
ACCCCAACCAAAGAGACGGGCGAAAATTAAGGTCCCACCTTTCACACCCCTGGGAGACCC
AACGCCATGACCCTATAAGTCGGCCAGCGCTGGCCTCCATCGTCTCGTCCTGCAGCCCCG
AGCATGGGACGACCTCGCTCTTGCAACACCGTGAGGGGGACGAGGTCAGTCCTGCTGCAC
CGTGCGCGAGACGAGCTCGGTCCTGTTAAATGTACACAAGACGATCTCCGTCCTGCTTCA
CAGGGCGCGAGACGAGCGATGGACCGCAGCTGGGAGAGGGCCAACCCTTTGATGGAAGTA
GCGCTCGGGCGACACGATAATGGGGCAAAGGTCAAAACGGTCTGAACGCATACGAGCCAA
CACTGGAGAAGCTAGCTGCCGCCGCAGGCAGAACCGTCGAGCCATCGCGATGCCACCATG
ACATCGGAAGGCACCACCACCGGAACTCCCCGTGCCGCCGCCCACGACCGGAGCAACGGC
CACTCCCGGTCTCTGCCCTAACCACGTCACCCAACGAGCTCCAAGCATCGGAGCCGCCGG
GCATGCACCACCACTGCCACGTGCGTCACCGACCGACCCCCAACGCTAGATCCAGCCGAA
TCTAGCAGAAAGTGGTCCGTGCGCCACCTCCCGAGGCGGGAGGGCCGCATTTGCCCCGCC
GCACGCGGGACCTAGGAGCCGGCCACCCCGCCGCCCCGCGAGCCTCTCGCCACGTCGCTC
CGTCCCGCGGCCGCCCAACGCCGCCACCCGAGGGATCTGTCTCGCGGCGAAGCCCCATTA
GTAGAGGGGGAAGAAGGGCCCGCCACCACCCGAGGGATCCGCCCCGCGCCAGAGCCCCGC
GACCAGCAGGGGGAGGCGGGCCACGGCGCT