morexGenes - Barley RNA-seq Database

Contig contig_56480

Source Contig contig_56480

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_56480 (6465 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location

Predicted Genes from contig_56480

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69480	2	1886 bp	MLOC_69480.1	Available	Available	LOC_Os05g34160.1, FRAME:-2, EVALUE:7e-134, 13105.m03547 protein mTERF domain containing protein, expressed
MLOC_69487	14	4445 bp	MLOC_69487.3	Available	Available	LOC_Os12g42120.1, FRAME:-1, EVALUE:0.0, 13112.m04422 protein PPR repeat containing protein

CDS Structure of MLOC_69480

CDS Structure of MLOC_69487

Contig Sequence (6465 bp)

>contig_56480 6465 assembly3_WGSMorex_rbca.fasta
AATACTCTCCCCTCGAAAACTGATGCGATCCCATACGCTTGTGGGACATCAGTCAACACC
TACCAATCCATGCCGCTGGTTCCTCCACCCTGCATCCTCACAACTTTCGGGTGAACAACA
TCCTCTTCTCTCCTCACATCACCACTAGCTTTATTTCCGTGCGTCAATTCACCAAAGATA
ACTCTTGTTCAATCGAGTTTTACCCATTTGGTTTTATTTTGAAGGACCTTCGCACACGGA
AAATAATCCTGATCTCCGCTAGCTGTGGCGATCTCTACCCCTTCTTTGGCAGCAGCAAGA
CCCGGAGCACCGCCCTCTCCACCACAGTGATCACCGGCGACGTGTGGCACCGTCGCCTCG
GCCATCCAGGCGCACGCTCCCTCACCTCCCTTTCCAAAGACTTTCAAATTCCATGTAATA
AGCCATACTCTGGCCCATGTACTGCCTGCCAATTAGGCCATCAACAACGTTTGTCGTTTA
ATACATCCACTAGTCGTTCTTATGCGATGTTTGATTTGATTCATTGTGATCTGTGGACAT
CGCCGGTTGCCAGCTTCTCCGGCTATGAATATTACTTGGTAGTTCTTGACGATTTCTCCC
ACTTCTCGTGGTCCTTTCCGCTACGTAAGAAATCTGACACTTCTGCCACACTGCTCCGCT
TCTTCACTCATGTCAAAACCCAATACAATGTAATCATCAAAACCCTCCAGTGCGACAACG
ACAGCGAGTTTGTCAACACTGCCCTTAGCTCCTTCTTCTCCAACAACGGCATCTGCTACC
GCTTCTCCTATCCTCACACATCGCCGCGGAATGGCAAAGCCAAAAGATTCATTCGCACTA
CCAACGATGTCGTTCGGACCCTACTATTCCAAGCACATCTCACCGTTTTGGGTCGAAGCC
ATACACACCGCCACGTACCTACTCAACCGATGTCCCTCTCGCGCCATTCAGGACCTCACC
CCATATTTTCTCCTCCATGGCTTGCATCCCACATATGATCATCTACGTGTGTTCGGTTTC
CTGTGCTTCCCCAACTTGTACGCCACCACCGCCCACAAACTTGCTCCTCGCTCCACTCGT
TGCGTCTTCCTTGGGTACCCACTCGAGCACAAGGGCTACAGGTGCTATGACCTCTCCTCC
CGCCGGGTCATTGTTTCGCGACACGTTCTATTCGACAAAAACATTTTTCCATATGTGCCA
GCCACACCATCCGCCCCGGCTTCTCTCACGGCCACAAAAATCCGAGACAAATCCTACCTA
CCTCGTCACCAATCATCCCCTACCCCACCAAATCTGCCTCGGATCCTCCGCCATGCAGCC
CTGCGCCTCTCACCAACGCACACTCAGCCGACAGCCCGGACCCCACCACCACGCGTCGCC
CAACCACCAGCCCCTCCTCTACGGAAGGATCCACCTCGTCGCCCGAGTCTTTCCCGCCCA
TCTCTCTGGCCCGTTCCAGCTCGGATCCCGCATCCACCCCTCCTGGATCCCCAAATCCCG
CCTGTGATGGCTCCATCAGCACATCCACCTCAGATCGCACGCCTACCGAACCCAGCTCAC
CATCCACTCCTAGCCCGCCGCGTCTACCGCCACATGCACTACCAATTGCACCTCCGCTTA
ACTCCCACAAGATGCGCACCCGCGCAAAATCAGGATTTTGCCAACCCAAACGCTTGTTCC
TCACCACCCAATCACCAGCTCATCCTTCTCCCATTCCACCAACATATCGTTCAGCTCTCA
AAGACCCCAACTGGCTCCAAGCGATGCGTGATGAATTTACTGCTTTAATTCAGAATTCGA
CGTGGTCTTTGGTTCCCAAATCTACAGGCGTCAACGTGGTCACAGGAAAATGGATATTCC
ACCACAAGTTCAACTCCGACGGCTCCTTCGCTCGATACAAGGCCCGTTCGGTTGTTCGTG
GGTTTACTCAAAAGGAGGGCATCGACTACGACGAGACTTTCAGTCCTGTGGTGAAACCAG
CAACTATTCGAGTGGTTTTGAGCATTGCCACCTCCTGCTCATGGCCGATTCACCGGCTTG
ATGCCAAGAACGCTTTCCCCCACAGCGAGCTCAAGGAGACGGTGTACTGTGCTCAACCAT
CCGACTTCATCAACGCATCACATCCCGATCACGTTTGTCTACTCCGTAAGTCTCTCTACG
GTCTCAAACAAGCACCACACACTTGGTTTCATCGCTTCACCTCTTTTCTCCTCTCACTTG
GCTTTCATGCTTCCAAAAGTGATTCATCCCTCTTTATCCTATCCACTGGTTCATCCATCG
CATACCTTCTCGTATATGTGGACGACATCATACTCACCGCCAGCAACACCACCACACTCG
TTCACATCATCAACTCTCTCAAGGCTGAATTCACCATGACTGATATGGGCGAGTTACACC
ACTTCCTCGGGATCAATGTTACACCCAATGCCTCCGGTCTGTTCTTGAGCCAACAGCAAT
ATACACTCAAGATTCTTGATCGCGCCGACATGCTAAACTGCAACACAGTGCCCACACGTG
TCGACACCACTGCCAAACTCTCTGCCACCGCCGGTCATCCCCTTCCCAACCCCACCACAT
ACCGCAGCATCGTCGGCGCCCTACAATACCTAACACTCACACGACCGGACATATCCTATG
CTGCTCAACATATATGTTTGTTCATGCACCATCCTCGGGACTCCCACATGCAGCTGGTCA
AACGGGTTCTTCGCTACCAGCGCGACACCTCCCACTACGGCCTCCAGCTCTTCAAGTCCT
CGTCGCTCGATCTCCTTGCATACACAGACGCCGACTAGGCTAGTTGCCCGGACACCAAGA
AATCAACCTCCGGTTTCTGCGTATTCCTTGGTGACAGCTTGATTTCCTGGTCATCGAAAC
GCCAACCTACCGTCTCAAGGTCCAGCGCCAAGGCCGAATATCGCGGAGTAGCAAATTGCG
TCGCCGAATCCTGCTGGCTACATCAACTACTTCATGAACTTCGGCGTCCTCCTCGACGAG
CTACTGTCATCTATTTTGACAACATCAACGCCTCGTACATGTCCTGCAATCCGGTTCAGC
ATCAACGTACAAAACATATTGAAATCGACCTGCACTTCGTCCGCGACAGGGTTGCTCTTG
GCGAAGCACACGTTCTCCACGTACCATCCAGTTCACAGTTCGCTGATGTGTTCACCAAGG
GTCTCCCATCACCGGTCTTTCGTGATTTTCGCTCCAGCTTGAACGTCCTGCCCAACGGCG
TTCCAGCTGAGGGGGTGTGTTAACCATGTACTCCCTCCATACCTAAATATAAGTCTTTTA
AGACATTTTACTAGGTGTCTACATACGAAGCAANNNNNNNNNNNNTATACTCTAAAGTAT
GTCTATACACATCCGTATGTAGTTCATTAGTGAAACCTTTAGAAAGACTTACATTTAGGA
ACTGAGGGAGTAATACTAAGTCATGCTTTGACTCCTAGAGTTTAGGATCTCTAACCGAAC
CCTGGCATGCGTGCCTACTCCTCGGGGGTTCTTGCTATATATGTACAACACTGTAATGTA
TCAAGTGCAACAAGAGTTAGTTCACTCTCCAACTCGCAATGCACCACGTAGGTGAGGTGA
TAGAGGTTTCTCATTCCACCAGAAGAATTAATCCCCATTTCTCCAACGCACCAACATGAA
TTTGAGCACGGGGCATGAATACACTGTCAATGCTGGTATCTAGTTTGCCCTGTTAGACTG
TCATATCCAACACACAGGTATCCGGTTAGCTTTGATTCAAGGTACGTTCGGCAAGCTCAT
TCAGTAGAGATGGCATAACTGGCACTGATACTGGAAAATTCCAGTTTAACGCAGGTTAAT
CTTCACTTCCTTGTATTTCCTCTATAATATTTGGTCGACTACAGACATTATGATCTTTTC
GTACTGTGTTCCCCATAAAGAAAAAAAATGCTCGACTGTATGCATAAGTAGACAGATATG
TACTACTAGACGACATATTTGCTACTCCGTGTCTCCGTCCCAAAAAAAAGTGTTGTAGTT
TTAGTTCAAATTTGTGGTATTCTTACAGGGTGTTGTCTTCGCACCTACCATACATACAAC
ATAGAGAGAGAATTACACAGTATTTACCATGTTCTTACAAATGGGCTGTCTTCACCAGGC
TGAAAATCTGGACTTCCTTTAATTTCATCAACCTGTTCCACATCGACCACTCGAGATCAA
ACTCCGCCAAGCAAGAACAAAATTTCCATGAGTATTGTGCAAATATGCGAGAAAAGAAGA
AGAGTAAAACACTATGTCCTCACTGCATCTGAATGATTGTTCATCAATGAGAAACATCCA
TTTCCTATTCATGTTACACATACTGATGCCTGGCATTGGATTCCCTATGATCATTGCTCA
ACAAGTTAGCTTCCAGTTAATGTTTTACACTACAAACTTTCGATGACCATCCAGTAGCTC
AAAATCTGACCTTGCATAACCATACTACTTGGCAGTCTTGTTGCAAGAGCAACACAATCT
TCAGAAAGCTGCCTAAGCAAATCCTACCAAGAACAGACATTGGCCGAGCAACAGAGTCTT
CGGAAAACTGCCTGAGTAAATCCCACCAAGAACTGCATAGGCCGATGACATCAAATCAAA
GGCTCATCTTCCAGGGCGGCTGTGGCTACTCCAACACACTGAAGCCCTCGAAAGGGATCT
CGCCGTTGAAAGCCCGGAAGACATCAGGGATCTCGTTTTGGTATGGCTGCACATACGCCT
GCAAGAACCGTTTCCTGGTAGTCACTAGCACCACGGCGAGCCGATGATTCCCCTCTGGCT
TCTCTTCCTTCCTCAGCACGGCGAGCACCGCACACCTCCTGCAATGGCTCTCCAAGCTCC
GCACCAGCATGCTCGGATAGGTCACGATATCTTCCAGGCTCAAACCTGCCCTCCCGACCA
AGAATCCGACATTTTCCTTTATCTTATCCTCTGAGATAGCCATCGCGAGTGCGTACCGCC
GCAACATTAAGGCAACACTGTCCTTCTGGAAACCAAGGCTCTGGTAGAGTGCATACTTCC
TCTCCAGTGTGTGGGTCTTCATCTTGGAAAGGATGGCAAATGTGTGGACGAACATGGGCT
CACCGGGTTCGATGCCGGCGTCCTTGACGGCCTGGACGATCTCGGCCAAGCGGTGGGGGG
CCTGCATGATGACGCCGGGGTGGACGGCGACGAGTTTGGAAACGTCCTCCGGGGGCAAGC
CGTGTACATCCCTTAGCACGGGGAGCACGAGGTTGAGGGTACTGTTGGGGCTGCAGCGGA
CAACGAACGGCATGTGGTGGAGCGCGGTGACGACGCGGGCATTGGAACCGAGGAGCTCGC
GGAGAGATTCGAAGAGTGGGGCGAGGTGGTCCTGGATGCTGCGGTGGAGGACGATGGGGC
TGAGGGAGACCAGCCTGGGGAGGAGCGGCGTGTTGATGCCGACGGAGGCGAGGAAGTCGA
GCTTGGGCTGGAGTGTCTTGACGGGGTCGGAGACGAGGACGATGGGGAACTTGCGAACGG
TGGCGGATATATGGGCGTCGGTGAAGCCATACCGGCGGAGGAGGTCGAGGACGGCGGAGG
CCTGCGCGGTGGACTCCGGGGAGGCGAGGCGGATGGAGTCGGCGGCGCGGGCAGCGGCGG
TGGGGGAGAGCGCGCAGGTGGATTGCAGGTAGAAGACGGTGGGGTCGGCAGTGGCGGAGG
TGGTGGGGTAGACGGCCGCAGTGAAGTGGCGGAGAGGGAGGGGCAAGAGGCAGAGTCGGC
GGCGCGCGGCGGGCAGCATTGGGACGACGGGAGGGGGCCGGTGACAGGACAAGATCAGTT
AGGGTTTATTCAATTTGCCTTTTTCGACTGGTTTTGGGCCTAAAACGTTTTTCTTTTTTT
CGTAGACTACATTTGGGCCCGGCCCAATACGAGACACGAGCAAACTCGCACTGCCGCGAG
CTAAAATGTTATACGGAGTAGAAAGAATATACCCTTCTATTCAAATTCAATTTGTATCGA
TAAATTAATCCAAATTTAAATAGTAGATGAATAATCGCAAATCTGTGTGTGTATGAGATT
ATAATAGCTTTAAAATAACTGACATAATTTTTTATTTTTTCCGATCATAAAAATACATGA
AAAAGAAAATGCGGTAGAATTTTTTTTCTGGATTTATGATTAAAGAAAAAAAGGAAGAAA
ACATGGGTTTTGTATAGTTTCGGTATGCAGTTTCACCAACAAGGCACTGGGACTTGCTTC
ACATTTGGAATTAAATAAAAAGAATTTTCATCAGAAAGAGGTCTACAAAGTCTTACAGAA
GAAGGTCAACGTTTGCTGGCTTATTTCGCAAAAGAAAAGAAACGTTATAAGAGATTATAA
GAGACTAGCAAAAGGCCCGTGCGTTGCAACGGGAGAAAAAATATCACACGCTTTCAATTT
TTATAATCATTTTGATTTATTAAAATAATAAGCTAACTAACTAAT