morexGenes - Barley RNA-seq Database

Contig contig_56421
Source Contig contig_56421
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56421 (6973 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_56421

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69436	4	2507 bp	MLOC_69436.3	Available	Available	LOC_Os06g48750.2, FRAME:+3, EVALUE:0.0, 13106.m05188 protein DEAD-box ATP-dependent RNA helicase, putative, expressed
CDS Structure of MLOC_69436

Contig Sequence (6973 bp)

>contig_56421 6973 assembly3_WGSMorex_rbca.fasta
CCGGCGATCCGCGGCACCTCCTCCCCGACGCTTCAGGTCCGGCCCCCCTCCCCCCTCTAC
CTCTCTTCTTCTCCCTCGGTGCCGTGTCCCGCTTCTCTTCGTCGCCGCCGCCGCCGCGCC
GTGCCGATCTGCGCGCGCGGGTGCTTTTCGGCCGGTCCGGCCGATCTGGGTTGGTCCTGG
GCCGGATCTGCGTCGGTTCGTTTGGGGAAGCTAGTTTTTCTCCGGCGGAGGCCGAGGTTT
TAGGGTTGCCTTGTTTGGTGACGCCGGTAGGGTTTCTGTGCGGCCGATAGGATCGGTGGC
TTTCGTGTTTTGAGCCTCTGTTTCGGCGGATGATATGCTTTTGTTACCTGTTTTGGTCGC
GATGCGCTTTAGCCGTTGTGTTAGTTAGGGATTTGTTGTAGCTCTTGTATGAAAAAGCTT
GCGTATAGAGCTTGTATGGCGCTGTCCTCTGTTTTGATGCCCGGTTAGCTGGACGAGCTT
GTGTGCTATAGTAGTGCATGTATGCTGAAATTGTGTGTGATAGTTGCGATGGCAGATGCA
GCTCTGTCTAGTTATATTGAGTACTAGAGGAAACAGTTACATTTATTTAGTTGTTTTAAC
TGCTTGCTCTCTTGACAATCTAAAAGTAGTGTCAAAGGACAGGTTTTTAAGCTGTCTTTC
ATCTGTAATGGTACTCTTGCATATGAATTCTTGTCTGGGTTCGCAATGGATTCAATGGTA
TTAAATGGGTTATGTATAGACACGTCCATACACAGAATGAGTTTCATGGACCAGTATTAT
TTGTTTTTGTTTCTCTTACCATCTTGTTGATGTTATCTGCATACACTGGTTACCTGTTGT
TAACCAAGCTTCTACATGTTTTGTTGCACCTCTTTTCACGTTGCTTGTTTGAGCTAACAT
ATGTTATTTCTGATACAGCCATGGCAGGAATGGCACCGGAAGGTTCCCAGTTTGATGCAA
AGAACTATGATTCTAAGATGCAGGAGCTGCTGTAATTACTCTAAACTTGATGTTTTTTCA
TTTTGTAGCTGCTCATTGTTATGAGCTGCTTGCCATTTAACCAAGTTGCAACCCTGTTTT
TTCTATTTGATCAGTCTTCTTACCTACACTCCTTGAATCTTATACAGGAGCCAAGGTGAG
ACCGAGGAGTTCTTCACCTCATATGATGAAGTTCATGAGAGCTTTGATGACATGGGTCTC
CAAGAGAACCTCCTCAGGGGAATTTATGCTTATGGTACTGTGCCTGTTGTGTTTTATTTT
ATGTCCTACTTCCTTGGTATTCTTCATCTCTCATGAACATTGTTTATTCTGCCTACAGGT
TTTGAGAAGCCTTCTGCCATCCAGCAAAGGGGGATTGTTCCTTTCTGCAAGGGGCTTGAT
GTTATCCAGCAGGCACAATCTGGAACAGGAAAGACTGCTACTTTCTGTTCTGGAATCCTC
CAGCAGCTTGACTATGGTTTGGTTGAGTGCCAGGCCTTGGTCCTTGCTCCCACCCGTGAG
CTTGCGCAGCAAATTGAGAAGGTCATGCGTGCCCTTGGTGACTACTTGGGTGTGAAGGTT
CATGCATGTGTTGGAGGGACGTCAGTTCGTGAGGACCAGAGGATTCTTGCAAGTGGAGTG
CATGTCGTTGTTGGTACTCCTGGTCGTGTGTTTGACATGCTCCGTAGGCAGTCTCTGCGC
CCTGACAACATCAAGATGTTTGTCCTTGATGAAGCTGATGAGATGCTTTCCCGTGGATTC
AAGGATCAGGTCAACACTCTTTTATGTTCTTCATCTATAATATTTTGCACCTTGTATGCT
GCACAGTTTATTGATCGAATGCCATCATTGCAACTCATTTAAGTGAAAGGAGGCATTAGG
TTGAGTGTTCATATCTATATGTAAAGATTCTCTTAGACAATCTAATCTAAGGCATCACCA
CTAATCCCTAATCATAACCAAGTCTGGTCTCTAAAGCTATAAAGCATTATGATATTCTCT
GTTTGTGTAATTTCATTGTCTAAGCTAATCCATTCTTATATTTACTTTGTATGGTATTCG
TTATTTGATCAAATTTCTGTTCCATATTTTAAGCTGTGGGTATTGATTTCAGTATTGTTA
TATTTGCAGATTTATGACATCTTCCAGCTGCTCCCAGGGAAGATTCAAGTTGGTGTCTTC
TCTGCTACCATGCCCCCGGAAGCCCTTGAGATTACCCGCAAGTTCATGAACAAGCCTGTG
AGGATCCTTGTCAAGAGGGATGAGCTCACCCTTGAGGGTATCAAGCAGTTCTATGTCAAT
GTGGAGAAGGAAGAGTGGAAGCTTGACACACTGTGTGACCTGTACGAGACTCTTGCCATC
ACCCAGAGTGTCATCTTCGTGAACACCCGCCGCAAGGTGGACTGGCTCACCGACAAGATG
AGGGGCAGGGACCACACCGTCTCCGCTACTCATGGAGACATGGACCAGAACACTAGGGAC
ATCATCATGAGGGAGTTCAGATCAGGTTCTTCACGTGTGCTCATCACCACTGACCTGCTT
GCTCGTGGTATTGATGTCCAGCAAGTGTCCCTGGTCATCAACTATGACCTCCCGACCCAG
CCAGAGAACTACCTGCATCGCATTGGTCGTAGTGGTCGGTTTGGAAGGAAGGGTGTGGCC
ATCAACTTTGTTACGCGTGAAGATGAGAGGATGCTGTTTGACATCCAGAAGTTCTACAAC
GTGGTGATTGAAGAGCTCCCAGCCAACGTTGCCGACCTTCTGTGATCGTGCGGGCTGTGG
AGAACATATGGTAAGGGGGGTGGGGGTCCTGACAGGGCTTTGTTTTTGTTGAAATATCAC
CAAGTTTCTTGTCTGTGGGGGAAGGCGGGTTTAAGGGATAAATGGTCTGCTGGGGTTCTA
CTTTAAAGTCGTTGTCGTGGACAATTTGGGATTTATTAAGCCATGTTTTGGGAATTTTTG
TAGTTGCTAGGCTGTGGTTCTATGTGCTGGGGAGGGAGGCGTCGCTGCTCATGTTGCTGT
TGCTGGAGTCCTCACTTTATTTGTTAAGACTATGTAATGACCGAATGATGTTATTTGTTT
GTGTCATCCTTGACTCTTTACCTATCGCATGTAATCCTGCAATCGCTGCTAGTAATGCTA
TCGTTATTCTGATATTTATCAGATTACAAACTGTTTACTCTTTAGCAATAGCATTTGCCT
GTCTAGTCAGTTGTCTTCTTGTGAATTGTGATAACTCGCAGATCATGGTGGTTGCCAAAT
TATTGGTCAAACGAAGTTTGCTCTTAGTTTTAATGTCCCTGTTACGTGTTGTTCCGGCGG
ATAACTTAGTTACCTGCTGCCACCCCCATTGTTAGATCCACCATTATGAAGCGTCTGTAA
ATTTTTGTATCTCTTTTTGCGCGGGACCATGGCGTCTGTGTGTGGTCAGGAGGGCCAGAC
GCCATGGTCCCTGGCGGGGGACGTTGGCGTCATGTAAAGATGTTAAATCTGATTTTTTTT
AAACAGTGGTTAAATCTGGATTTTCTTTCGAGTTTAGGTCAAAACACAAAATTTCCCTTG
AAGCGTACTGTTCCTTTTACGTCATTAGTGACGTTAAGCATTGCAACATTGACCATGTTT
CAGCAACATTAAGGCCTTGTTCAGTTAATCCCTATCAGGAGGGGATTGAAGAAGATTGGA
GGGGATTTGAATGGAATTTGAGAGCTCTTAGATCGGTGGCTCTGCAACAAAGATGGTGTT
TCAGAAATGTGCCCCGAAATATGCTTCTGCAACAACGGTGACAGATGGCAATGCAGTCTA
GGCGCATGTCATCTATTTCAAAAACATGTCTTTGTAATAACAACCATGTTCAAGAACTCG
CCTTTGCAACAGTGATAATGTTTCAATGGCGTTGCAATAGCACGTGATGGCCATCACCGT
AGGATCGTCCTTAATCGGACGACAGGGTAGGCGGACGATGTCATGCCCGCATCAGTCGGC
AGTACGATCGTCTTTAATTGGACGATATGGCAGGCGAATGATGTCGATGCGCGTAGCAAG
CGTTTTCCTAGTTTTAACCATCAGCGTCTGCAACAATTTGTGAAATTTTGGTTCAGTTGG
CTGGACAGGATGTAAGACACTGTAAATTTAAGAATGTGAGCGAATGTCTCGGGTACCTTA
GAGATTTTAGAATAGCAAATAGAGATGGTGAAATGTCATCCATGTTAAGATTAAATTACA
ATGTATAATTAAGGGGAAATCTTCCTTTGCCCATTGAACGTGCGGTTGCACCTGCACGGT
TGTTTTTCCGCAACCGACGCATTTCCTCGAGCCGACGCCTCGTGTAGGTCGTCATATCTA
TCTAGGAGATAATTTAAGCTTCCTTTAGTTCATCAAATAAGATGATTCAATCACCCGATT
TACAACACGTTATCAGCATCGCCTGCGAGAGAGAGTGAGATAGCAACACAGAAAGAGAAG
AGAAAAATCACCTCCTTTTTCCTGCGCCTCATCGGTGAGGACAACCGGCGGAGTCGTTTC
CTTGCCCGAAGCCATTGTGCTGCCGCATGATGCGGCCTGAATGCCGTGGACGTGGCCGAG
GTGCCGCTGGTGGCTCCACCCGGGGCGGTTTCCGCGCCCCTCATCATGCCGCGGATGGCG
AGCGCGCTCCAGCGAACGCTACCCAAGGCACCCTCGTCGGCCTTGCACCGCTGCGCATGC
CCCTGTCAGTCTTGACCCATGGCTGCTCGCTTGCCTTACCCCGTCGATGCTGCATGCGGA
CGCCGCCACACCCACAACCAGAGAACGCCTCTGCCCCCTCCTTCACCAGGGCACTGGCCG
CCGCCGCAGACACCTCCATCCCCTCCTCCGCCTATGCACTGGATGCCCCCGCACACGTCG
ACGCGTGCTGTAGAGGACGCCGACCCGATCACTGACCACCCGACTACATACCCGTGCCGA
TGCGCACCGAGGTGACCGCGGAGGAGGCGCTCGACTTCGTCTCGGCGCCGACACGCGCCT
CCGGCGTCATCCGCTTCGGGGCCGGGGTCGAATCCACCAACGGACTCGCCCCGCCACGGA
TGGAGATGGGCGTGGGCTCTGGCCGCCATGCTGAGCGAAGCTTCGGCCGCCTATTCCAGC
GGACCGTCGTCGCCATCGACTGTCGCGCCGGCTCGTGGGCTCCCACGAGCCTCGGCCTCG
GCCTTGGCGCCGCTTGCGAGGACCCCCGTCGTCATCACCTCTTCCTCCGACGAGGAAGGG
CCATCCATGATGCGCGCGTAATCACCAAAGTAGTGAGGGGAGGCGGCGGCCCTCACTCCA
ACCGCTGGCGGCTGGGGTCTTTTACGGCCATCCCGGTGAGGTGGAGAACGAGAGGCGAGG
CAGAGAACGAGGGGAGGAGGTGGAGTACGTGAGGTGAGGCAGAGAACGAGAGGCGGAGGT
GGAGAACGAGAGGTGGTGGTCGTGGTGCGGACCTTATCTATAACTGCTCGCCCCCTCGAT
CGCATCTTATGCGGTGCGAGTGGCTGATGTGGGCCGACCAATGGCCGTGTTGGTCGAGGC
CCACGCGCCCAACTGCCCTGTGTTTCCATTTTTTTTTGTTCCTCTCTCTGTTTTTAGTTA
ATTTTAGTACTAATTATTGTATTAGTGAAATGGTAGACTATATCTAGTATTGTTTAGTAA
CTAGTTTGACTATTTACATTTAGTCCAGTTTTAGATTTATTCTAGATTAGGACTTGTGTA
ATTATCAGTATGTTTATATTATGCAATGGCTTGATAATATAAATAAAAGTACCGGATTTC
ATCCGGGAAGTATGACATGTTCCATGTGTTTACCACATATTTCTTGAACATGTTTTTGCG
ATTGAGATCGGTTTCTCTCGCGCGTCAAACTTGCAAATCTTTGAATATTTTCTTCCTTAT
TTATTGGAATCACAAGGTAACGAGTTAGGATCTACTGCTCATTTACAGACTATCTTCTCT
TACTGTGAGGTCTACTTTTTGTCAATCTCGACAAGCAATTACCTCCAAAGTGTATTCCCT
ATATCTGAATTGTAGCATACACAAGGTAATGACAATGTCGCCCATTACTGTGAGATCTAA
GTGATCTTCAATGTGTTATGTTCACACAATTGAGGTTGAGATTTTTTTTCAAGTTTTCAC
TTGACTATCAAATTTTTGCATTCTTATTACACAACCATGATGGTTTTTAATTTATAGTCC
CTAAATTAAGTATCTACGGTTCCCCATGTAGGCAAAGATGATTGGCAAAGAGTTTGAGGA
GCTTGCCCTCAATGGACACAACTACCCTACATGGGCTATGGACATCAAGACCAGTCTTGC
GTCCCGTGGGATAGCGCGTGCAATACAACCTCCGAAGACTCCCCTCCCGGCTGGAGCCAC
GCCGTTGACAGAGCAACAGAACTATGCTACCTTGTTCATCATAAGGCACCATATTCATCC
AGATCTCAAGTCTGAGTATTTAGAGGAGGTATCTCCTAGTACTCTGTTTCTCACCCTCAA
AACAAGGTATGAACAACAGAAGGCAGTAGTCATGCGTGAAGCACTCCATGAATGGACTCA
TCTCCGTCTTCAGGATTTCAAGTCCATTGGTGAGTACAATCATGTTGTTCATAAGATATG
TTCCAAACTGCGCTTTTGTGAGAAGGAACCTTCTAAGGGGGAGAAGATAGAAAAAACTTT
GTCTACTATGCTACCTTTAGACATGATCCTCCAACAACAATACCGTGCTCGTAACTACAC
TGTCTATTCCGAGCTTATTCACATGTTACTTCAGGCTGAAAAGCATGATGAGCTACTTGC
TAAGAATGGCTCTCAGCTCCCGGTTGGGGCACAACCTTTACCCGAAGTTCATCTGAATGT
TGCGAATAGACAAAAGTTTAATGGTGCCTTTCGAGGTAAATAGTCCAATTTCGAGCACAA
GAGAAAGCGCAATGGGAACAAAAAATTCAGAAACTCAGGCAAGGGATAAGGCACTTCAAA
GCCCAAGTTTGAT