Contig Data
morexGenes
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Map Locations of contig_56417 (5447 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_56417

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69434 11 2196 bp AK364906 Available Available None





CDS Structure of MLOC_69434






Contig Sequence (5447 bp)

>contig_56417 5447 assembly3_WGSMorex_rbca.fasta
ACACAAAAGGGTCAGGCCGGTGAATTATTCCTACTGAGGGGTCAATCCGTGAGTTCTTTC
GTCCCAGGGGTCATTTTTGTCAATTTTGCCTAGAGTAGCAGATTATTTGACAAAATATAG
TCATACTGAGCGTAACAGAACTGTGTGGCTACACAGAAGGCCCATGCACTGAGGAATTCT
TGCCTTGTGTGTGTAACTTTATGATCTTTGAATAAACTTCTTTTACCAGCGCAAAAAAAA
GGTGAATATGAATGTGACCAGTTACTATATTTTTCGAGACAAGGTAAACCACAGTACTCA
TTCAGACGATTGCGTGCAGCCAATGGAGCCTGAGATGTCGAGGGGCCACAGGCAGAGCTA
GGCCCACCGATCAATTTTGGATCCCAAGGACAGGCAGGAAGAGATACCCACGCAAAGGAG
GAGCCCATCTTCCTGCGTGCCCACACCATGCCATATTGCCATGCATGCAGCATCCATCCC
ATCTCTCCTTGACACTCAAGTAATCCTTGCACTCCTATGAGTGCTATATGGGATCAGTGC
TATATGGGATCGACCATGTGACTTTGCATCATTCCCTCACACAAAAGACCATCATATATC
CCCTGCAGCTATATATACAGCCACTACCATGGCAGGCCGGCACTGGCTGGCCGGTGGCCT
CTCGTGTCATGGACGGAAAAAAGGCTCCGATCTTGTGTGAGAGGCTGTGAGCAGCATATA
GTCACTCCGTTCCTAAATATAAGTCTTTTTAAAGATTCTATTAGAAAACTAAATACGAAT
GTATATAGACATATTTTAGAGTATACATTCACTCATTTTGTTCCGTATGTAGTCCATTAG
TAAAATCTTTTAAAAGACTTATATTTAAAAACGGAGGACATATATTCGTTTAGACAAAGA
AAAAATATGTTGCTCACAGCGGAGTATAGAGACCAGAGTAAGCATATATAAATATGTTAA
AAGCTGTTGAGTCAGCTTAGGACATGAACTATGGAAGCGAAAAAAGACAGATGCTCCATC
AAACAGGATTGGAAAAATTTAGGCTATTGCTCAGTCCAATGGTGGCTATGATGGTGCTAC
CTCACACATCTCATCCTTTGTCCCCACGTGTTCATCTTTTTCATTCTCCCTCCCCTTCTT
TTTCTCTCCTTCCTTACTTTTTTCTTCTTTTCTCACTGAAGAACCAGACTCCTCTGCAAG
CTTCACCTGGCGCATGCAAGCAGCGGTCCTGCTTCCACAATGGCATCCGAGCCTAGTTGG
CTTATGAGACATAAGGTACGTAGCATTTTTTCGTAAGTCTACCATTGCTCCGATCCGTAG
GGTTGTGCGTCCTTCTACTAGGCTTTTCTTACTTAGCAAAAACGTCCATACGACAATATA
TGCACTGTTAAATAACATGATAAAAATAATTGTATGCATCGCTTTAATGAAAAATGGGGG
TTGTCCTCCTTTTTGAAGAAAACTCAGAATTATACTATATAAACAAAGCAAGTCTTTGGG
TATATAGACGTCCTCTTTCTCTTGCACTATTGGATCTGGGGAACACACTTGTAGCTAGGC
TTTTCGCTGGCTCTGATGCGTACTTTCCTATGCCTGTGATGAGAAAGGGCGCGTGTGTAC
GTGCAGTAGCTAGGAGGTACCACACCAGCTATACTTGCTTCCAGGATCGAGCAAAAAGAT
GCAGGCCAGGCTTTACAGATGCCAAGGCAAAGGATATGCGAACATGTGCGTGCGTGCGTG
CGTTTGTCTGTCACGTACTAGCACGGTACACGACCCACGCATGGCACGAGCGCGCTTACC
ACGGTACAGTCCCCTCCCGTGTCTATACATCACGAGACAATCTTGTCCAAATCATTTTGA
GAAGAGAGTACGCGCGAGAAAGGCGTGTAGAATATTCTCGCAACACGCGCGTCTATCCAC
GGCACGGCATCATTAACCAGGTGGCTAGCTAGGCAGCAGCTAGCCGTAGCCACGAGCCAT
GCATGAAGCCTCACTCCATTGGCCAAGGCCTGTCACGCAGCTGGCCCTGCACGTACGCAT
ATGCATGTCCTTTTTTCCCTTTTTATTGCGAGAACGCATATGCGTGCATGTCCCTGACAT
GATGGATGCGCGCGCAGGCCGGCAGGCGCAGCCGACGTGCGTGCTCGAGACGAGACGAGA
CGAGATGAGATGCCTTGTCTGCGCGCGCACGCCAACGCCGGCGCGACGTCGAGTCCGCAA
TAATTGGCAAGAGAATTTGCAATGTGCGTAAATAATACTCCTACTCATTTTTCGCGCGCA
TTCTCTTGCAACCACACGCGCGTACCGAGGAGCGTGGCCCATGCGGATTTGAGCGACGGT
TTCGGATTGTCCATCGTCGCCCTGCCGGTACAGTGTCCGTCGCAGCAGTCGACGGCGTAG
GTTGCCGGTCACAGCGCGCCGACCGACAACGTGAAGGCACCTCGGCCCTGCCCAAACACG
ATCCATGGACGGACGTATCGAGAGAACGCGCCGTACGTCCATGGATGCCCGCCTCGTTCG
CTGCTGCTTGCTCTGCAGGTGCATGCATGCATGCATGCGAGGAGCTACGCGGTAGAAAAA
TGGCGCACACGCTCGACAGATGTACTGGCAAGCCGTCAGTCATTGGTGGGAAACGTGAAG
GCTGGGCTGCGGTGCCGCCTGCACGGACGACGTGAACGTCCGATCAGGAAAAGAGGAAAA
TGGTTTATTGTATGTAAATCATTCACTCATGAGTCATGCGCAGCATCTGTTTCGAGCGCT
AGCGACGGAGCGATCACGCAGAAACGACGAGGGAGGCCAACGACCTTTGTAGCATCTCAC
ATGACATGTCGCGACAGCACGCCGGAGACGCGTCCCGTCCGCTCGTACCGTTTACAGAGG
AAGGAAGCCAGCCGTGATATTACAGCGCGTGGTGTCCGTCACCGTGCATCAGACGAGCGC
GCCTGCCTGCCCGCCCGCGCAACCAGCCGGTACGTCCTCGATGCGCACAGAGCCCCGGCG
GGCACCAGCAATGTCTCGGCGTGCCGCGTTTCCCCTGCCATGGCAGGGCTTGCCGGCGCG
GCGTGTGGGCTGGGCGCCTCTGCACGTTCACCTCCGGCTGTCGACGTCCACGACGGACAC
GATCTCGTCCAGGTCGGGAACTGCCGTCGGAGCCAGCATGTTGCGCGAGCTGCCGAAGCG
CTCGTTGGGCGCCCGCACCACGGGGATCTCGACGCTGTCGCCGCGGCCGGCGACGGGATC
GGGGACGCCCGTCTTTTTGAAAAAGGTGAGCGAGTTGCGGAGGCTCGTCTCCGAGCGGCC
CCTCTTTCGGGCACCCGTGGCCCAATTCGCCACGGACTCGTGGACGCCCGAGCCCAGCGC
TTGCAGCTTGATGTCTCCGCCCATCTGGCCCAGCAGAATCAGGGTGTTATGTACTATCTG
ACTTTTTAAACTGTGGAAGCAGGAGCAGAAAATATTTCAGGTAGTTTACGTACGTGGGTG
ACGATGGCGTATAATGGTAGGGTGATGTAGCTGCACACCACCTGGATGATCAGGCTGCAA
AAAGGAGCACACAAATCATTCTTAAGACGCAACAAGTGATCACAACTTGTGTACGAGAGG
GCCACGAGATATCCGTGAGAACAAACGGCGATCGTGCGTGAATTTTACTCACCCGATAAC
AAGCCTGGAAATGGCATATGCCTTCTTCTCCATGATGCATGAATCGAACCCATATGTTAC
CTGTGGAGGTGGTGACTTTTTTAGTTAATTAGCTGCAGGACCTAATCATACAAACATTTG
AAATGCTTAGGTGAGAACGTGCAATGGATAATACCAAGACCCAGAAGAAAAAACCAATCT
CGAAGGCGTTCTGGAATAGGATGAAATGGATCAGATGAAGGACAATTGAAGGTTTCCCAA
ACCAGAAATGCTCCTTGGATGGCTTTATATTCGGGACTTGGTTTGTTGTATCTGCTAACG
ATGCAGCTGCCTCTTGAGCTAATCGGGTAATAATATGCTGCAGCTTTGCGCCAACGACAA
GCAGGAGCTGCAAGTTACTCCATTGTTAACAATTGTCATCACTAAGATAAAAGGGCTATT
TTGAGCTTGCTTTTACTAAATAAGCATAAGAACTAACATAGGCGTGATCAGAACTGAGAA
GTACTCTACAAAATAGGATATTCGAATCCACAGATGTGTTGTAGCAGAGGAATACTTACA
AATAGAGGCAGGAAAGCTAACCAGAAGTATGTGTGCCATCCTGCATTTGGTGGTACATAA
AATTATAAAGAACATGCACAACAGAAACATATTAAAGCATATCCTGGTCATTGATCAACA
AAAAGGCCGATACCGATGTACGAAACCTTAAGATAACTCATGTAAAGCATGCTTAAAATT
TATTCAACAGCCAAGTGCTTGGTTCAGGTTATTCATCAGATTCGACTGGTTAGAGTTTAA
ATGACAACATATAGTGGGAAAAAAAAAGTAAAATTATTGCTGGGAATATTACTACATTGC
ATATCTAAAGACCTAAAAAGACATGTGTTGAGTGGTTCAGTCAGACGTACCATTTATATT
TAGCAAAAGGAAAAGGACAACAAAAAGCCACAGGTACCAGCTGCATGAAAGTTACTAATA
TTAAAGGTACGTATATATTCAAGTCAAAGTTAGAACTTCTTTACAAGAATACCAACCTGA
TACCAACAACCCTCTTAAAGTCATGCTCAAGGGCACGGGTCATGTACTTGTGGAAATCAA
ATTTTGGGTGGTTTGGGTAGTGTATCTGAATTAATTGGAAGGAACAAAATACCCTATTAG
CTTCAAGAATTCAATAGCAGTACAGATAAATACACGAGAAAAATATGCAAGAGTTAAGCT
AAATAATATATCTTACTAAGACGAATGCTGATCTAAGCGCTTCATAATCTGATTTACCCA
CAGAATCGTGAAATTGCTTCAAGAACGCAATCTGCATTGAATGAATCAAACCTTTATGGT
CAAGTTGTAGATAGACTAACAGACATAGTGACACACAAAACGAAGATAGTTCAAATAAAT
ATAAATATTATCGCAATAACACATACCGCGCGACTGGGAGCAATTCATTATGGTAAATGA
TAAATGGATGTTTTCTGGATATTGATTGATCTACTGAAAACATCATACAGCAGGAGCACC
TTGAAGCCCTGACGTACTGCAGTTTTGTGCACATGCTTGCCATATTTTGAGGACAGTGTG
TGTTCAGGCCATAAACCCAGCTGCTGATTCATTATCCCCAAACTAATAAATGATAGAGCA
TTCATTGGTAGACAACTATGATAATCTACTAAGCAGCATGATATGTATGTTAGACATGAG
ATATTGTAGGGATAGATATTGTGTGTTGTAACTTCTTTATGTTTAACTTTCTATCCCTAT
CTCTCTCATGTATATCTCTAGTTGGTTATTCTCCCAACCGATCACCA