Map Locations of contig_5635 (5599 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_5635

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69391 2 2489 bp AK249827.1 Available Available None





CDS Structure of MLOC_69391






Contig Sequence (5599 bp)

>contig_5635 5599 assembly3_WGSMorex_rbca.fasta
GCTTGGGACCGGCTATGCTAAGACAATAAAGGCGGAGTTCTAAGTAACAGGTTTCTTTCC
CCAAAATTAACAATAATAGTGAGAATCACAGGTCAACGACAGAAACGTTGTCAAGATCAA
ACGAGAGAAATGTTATTTCTACTCAGAAAAAAGTGCACGTTGAATATGAGAACTTCAATA
AGTTACAAAGCACTAACATTCTGCTGAAAAGTTTGGTCGCTGAGGTACATTTCATAACGT
ATAAGGATGCCACGAGTGATCTGCCAGTTCTTTGATGTCATGTCCAGGATTTCTAACTGC
ACAGGTACCTCATGCAGTGTCATCCCAAGAATCAAATTTCACTTTGAAATGTTACATAAA
TAATAGAACCCTAGCACTAAACAAGAGAAAGATAACGATGTCGACTAGGGCCCAAAATTT
CATTTGCATCACAACATTAGAGGCCTCAATTACCTCCACTTGTCTCTTAATTCCTTTTTC
TCAGACCAAATCCAAGTAACGAAAAGAGCAGCAACCAATGCGACAATAGTAATTAGAAGA
AGGGCATAACTGAATTCATCCGTGAGTGAATCATAGGTTCTTGACGGTGCAAGCCGAGTG
TAGAAGAGATCAACGCCATATGTGAAAACAAGAGTAGTGGACTCCAACTTTGCAGGAATA
GAAACAATTCCTCGCAGGGCTTCCACTTGAAGAGAGTGTGTCACATAGGACTGCGGGAAA
AATGACATAAGCAGGATGAATTATGTCCAAATAGCTCAATATACAGGATCATATATTAAG
CATAAATATATATAAGCAGATGTGCCAAACCACGCATGCCAAGATGTGACCAAGTAGTGA
TCTAAATAATCATATGAAAATTTACAAATTTACAGAGGGAGTACAACACTATATCAAGCA
CAAGACATGAGGCAAGGAAGTGTGTGGAAGAGATTAGTAGTTAAATGAAGCTGGAAGGAG
ATATTCAAAGGACCCCTTTTGACACTTTAAGCAAGTTGTCCAAGTAATTTTTAAGCAATG
TTAGTAATAACCAAAAGTTAATGAGAAAACTATGTTCATAGATTTTATAAACTAGCTTTG
TTCTGCACAAGTTAGGCTGTGTTTGGTTCAGCTTCCAAAGCCAACTTCTGCTTTGCAAAA
GCAGAATCTGAACCAAAGGGGCGGCGGTTCACACCAGATTTTAAAAAGCTGCAGTTTCTC
AGTAGTGTAGTTTTTGGCATCAACTCTAGCAGGCTCGACCCAACTTCTCAGCTGTGAGAA
TCAGATTCTGCACAAGTTAGTAATAAACCAACTGGGTTCTGAAATCATTGATGTCTTCTT
TATTTGAAGAAAGAATCATATTTTAACCATGCAACCAAAGTTGTCTATGTCCCAATTCCA
CTTCCCAGTGTGCTAAAAGAAGTCGTGTCAGTTTTATCATACACGATAATGATGAACTGA
TCAGCAGAGAATACACGTTTTATTAAAGTTTCTGAAACTTAAACTGAAGATTGGAACTTT
AGTAGACACTCGTTATAGTTAATAGATGGAGACCCGCCCATCATAGCTCATCAAAAAAGA
GTATAATCTTTCATCTTGATATTTTTTAACCATTATTTGGAGTTTAACAATTCTACACAA
ATAAAAAAAAGAATGCCCCTTTTAACAAAAGGAAAAGGTTACATCTTAGCAACAGTGGCT
CGAACCAACTACTTTACAAAATCCAAATAGAAACAAGCGGATGTCCTAAACCTGTAACCG
AAGCATAATATATGCAACCATGATGAGAGAAAATTATAATCTATAGACCAACTTCATCAT
GACAAGATATTAACACCAATTAGTACTTTTACATTGTAATAACATTAATACAATTATAAG
AACACAGATGCAGTACATTGATATAATTATTACAAGAATAAATGTGAAGGTAAAACTTTA
GAGCATCATGACAATAAAAAATACCTGTGGAATGATAGGCAAATAATCTGTTAATGGTAT
AATACCCTCTTCTTTCTCTTGCTGTGTAGGATTCACTGAACGGCGTGGGTCAAGAAAGCG
CTTGTCAAGTGCCAAAACCTGCAATATGTAATATGTTTCATAAGAATATAATTCAAGCAT
CTGCGACTGACTTCATATTAAATAGCCAAAGGTCTTGTTTAGAAAGACAAAATATGTTCA
TTTCAAACATATATTGTATAAGCAGATGCTATCGAACTTAACCAGCTTGAGTTAAGGTGC
ATATGTTTCCTGGGGCTATGTTGGTACAAAATCTTATTAGTGCAATTACGTGCTGTTGTC
AATCTATTTCACAATTCAGGTAAACATTTGCCGAGAGAGGCAACAGGTGCCACAGGAGTA
GTATGGTGGCTTTGTTCAATTCGTCTTTCATTTATTAAAAAAGATATGATAAGCCTTCCT
AGGGATGACTTGACAACAAAGAAAAGACACATTTTAGTGTTAGAGACATCCGTATCTAGA
CAAATCTAAGACAGGTAATTTGAGACGGAGGTAATAGAAGCTAAGTTTCCATGCTTTTCA
AGCTAATCAATGGTACCAAAGGTGACCGTGCAAACAGCACCCAGGGTGAACCATCATCAT
GCATAACACAACATTCTGACAGCACTGCTGGTGGAATTAATGTGGACATGGGATTTCAAC
AGAAAACAAAAAGGTGGCATAACATGTAAAATCATACATTTGTGGTTTCAAAAACAGAAG
GTGAAACGATGCTTTTGCAGCTATCCAAAAGTAAAAATTGATCAACTGAGCGATGCATGC
TTTTTAGGGACAAAGCACTGCATGTTTTTGTTTGTATTGAATAAGTGACCAAATTAGAAA
CATCATTCATACCAACTGCCGGTGGAATTAATGTGGACATGGGATTTCAACAGAAAACAA
AAAGGTGACATAACATGTAAAATCATACATTTATGGTTTCAAAAACAGAAGGTGAAACGA
TGCTTTTACAGCTATCCAAAAGTAAAAATTGATCAACTGAGCGCTGCATGCTTTTTAGGG
ACAAAGCACTGCATGTTTTTGTTTGTATTGAATAAGTGACCAAATTAGAAACATCATTCA
TACCAACTATCCATTATGGAAACATTTAGAATCTACATGATGCTACGAAGACCAGCTGAT
AGGAGGTCCCTCAATTTCCCATTAGAAGGTAAGGAAGGATATATGTGAGGTGCCATATAA
ACCATGTCCGCATCCAACAAGGGCAAAAAATGTCCAATGACTTGTCCAGGTAAATAACAA
TGAAAATGAAAATCAAGACAACAGACCTGGTCACCAATCGTGCCAATGAGAAGCTGCTTG
GAAGTGATACCCTTGGCTGTTTGCGTAACTGCCATTGCCTTCACCGAATGAGTAAAAAAG
TATGACTGGGATTTCACCATAACCTCTGGTCGGGAATAAGAAGTCATGGGTGCAGACAAA
TTGTGCTTCCCAAGTATGAGCTTCAGTACATCTTTATTGTCCTGTGTCAACACTTGGTGA
AGTTAATACTACCGACACCAAAAAAATATGCTAATGGGCTTATATTATAACAATGTGCAC
AAGCCATACCGCCCTAGATTGATCATATATCTCAATCACTGCAATTTCAAATCTGTGAGC
TCGGAGGTTGAAATAATGATAGACAACCCAGTTCTCGCTGACAACCTTGACAACACGAAA
AGAAATAAGCATGTTAACAGTTAGTAAAGAAGAGTAGTTCAAAATAATATATATACACAT
GCGCAAGATACTCCAGACATCATACTTCGTGCCTGAAGATATAAATGCCGTGAGAATTGA
GATACACATGCACAAGATACTCAAGCATATCAAATATGTTGTGAAAAGATGGAAATAGTG
TATAACAGTCTCATACACAAATTCTGACCGGCGAGATTAGGGTCCATGAATAAAAGCCAA
GTTATACTCACGGAATGTACAGGGCCTTGTGCACCATGATGAGTCATACGGTGTAGTATG
CGTCCGCTGACAGCATCAATGAGATATGCCATGAGTGAAGCTTCTTCAGGTGCCGCGGAT
CCAATTTCACCAGCAGCTTTAGGAGACACCGTAGCAACAAAAATTAAGCTCTTTGATAAA
TACTTATACATCACATCTTGATCTGCTATGATCTTTGCTTGAGTATGAACAACCTTTAGG
ACATAAGAAAGCGAAGATTACGTTATAACATGGTTTAAAAAAAGATGTTGGGCCACCTAA
TATGAAATGAAGCAAGCAGAGGAAATTAACGGACCTCATTCATCTTTCGTGTTTCTGAGA
CAGAAATCCTTTCAGCATCGGAAGGGAAAATGATAGACCATAACAACCTTGTGCTAAAGC
AGTATGTGTCACCCGAATCGAAGTCACATGATTTCTGTAATGAATACCCTCTGATAGCAT
TTTTCTGAATATCAACGGAATAGAAATACTGATTTGACATTTCAGTCATAAATGAATTAA
GGGCATCCGGAGATCTTGGATATAGGTGAGCATTGGAGTTGGAATCAACAATAAGATGAA
GACGCTGTTCAGATGAATCCTTAAGTATCAATGGGATAATTTGGGCAACAGAATGGTCAA
ATCTCTGAGAGTTGAGTTCCTCTCCAGAATACGAATCAAGAATACAGAGGACGCCAGGAG
CAACAGAGCTGGCTCCAGATCTTCCCACAACAAGTATGGACGGGTTCTCACGCATCACGC
GGTGATGGGGTACCTGCCATTGGTATATCCTCAAGGCAGAAGGCATTTCGCCAGATTTAG
AAGCACGAAGGGAAGGCAACAAATTTGACCAGATAATACGGCCATCTCCAGTATGCAGAG
CTATCACTTTGCCAGCCTTGGTCAGTACGATAAGAAGTTTGCGGAAACCATTATGGTCTC
TGGTCATCTTATTTTTCTCAGAGCTTCTGACTCTCAATGCTTGGATTGCAGCAAGTTCAT
CAACACTAGCAAGCATTAGAGTTCCTTTGAGTTTCAGCACATGTCCCTATACAAGAATCA
GGAGTCAAGCGCAGAATTATGGATGAATACACACTATTACTTAACCGATGCTACCATTAG
CTAAGAAAGCTGTACAAAAAACATACATGCATGTCAACAAATTGAGTTAATTGCACAGAA
GTACCACAATTGAGGCATTACAAGCAGATTGATACCAAGATTGATAACATTTACATGTCA
GTACCAAGTCCGGGGCAAGTCGTTACAAAAAAGTTCTAAACCGTGTATAAATACGCATTG
GCGGTGTATCTGACCAATGGGGCCCATGTGTCAGGTGCCCACGTGGCTTTTTTTTTGCAG
AAAAGCCCCTTGCTTTATACGTAATCACACAAATGCCCATATTTTTGCGAAAAATAGTTT
TTGTGAGAATCTTTTTCCCTGCAGTTTTTCACCGAAATCGGACTCTTTTGAAAGTTTTCC
TCGAGTTAAACAAATAAGTAAAATAAACAAAAATCGGGCCAACTGGAAGCTACTACGGGG
TTCCCAGGGCCAGATCCGAAGGGCATGGGGGGCCGAGCCTTCTCCTCCGACGCCGGCTGC
GAACGGGGCAGACTCTTCTCCTCCGGCGTCGGCGCCGCGGCGGCTGCGGGCGGGCGTGGG
GGCGGGGCCTCCTCCGGGG