morexGenes - Barley RNA-seq Database

Contig contig_56279
Source Contig contig_56279
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_56279 (6399 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_56279

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69344	2	2064 bp	MLOC_69344.1	Available	Available	LOC_Os02g11050.1, FRAME:+2, EVALUE:0.0, 13102.m01245 protein 26S protease regulatory subunit, putative, expressed
CDS Structure of MLOC_69344

Contig Sequence (6399 bp)

>contig_56279 6399 assembly3_WGSMorex_rbca.fasta
CTTCGTTCCTAAATACTCCCTCTGTTCCAAAATAATTGTTTCAACTTTGTACTAACTTTA
GTACAAAATTGTACTANNNNNNNNNNNCTTATTTTGGAACGGAGGGAGTATAACACATTT
TAGATATTTCACTAGAGACTACACACGAAAATATACAGACATAATTTAAAGTGGAGATTT
ACTCATTTTACTTCGTATATAGGCTATAATAAAAAAATTAAAAAGACTTATATTTAAAAA
CGGAGGGAGTACAACCACAGCCAATGCTCCCAAAACATGACATTACGATCACAACAGATT
GTAGCGATGGCTCCTCTTTCTCTGTTGCGCGAGAGAGAATCGTCCGGTTGGTTTGTCGCT
TCTCCGGGACACGAGAAAGATCAGCAATATACTTCATGACTACATACAAAATAAAATAGA
TGAATCTATACTCTAAAATATGTCTATATACATCCGTTATAGTTCTTTATGAAGCGCAAT
GTTGACTACGGAGATTGGTACCGTTGTTCGTGGATGACTTTCGCACCCACCACATAGACC
ACGTAGTAACTATAGCTTTGACAAACTGGTCTTCATGCACCGTGCTCTGTAATTCCATCA
GCCAGAGGCGTGCATCCTGGCAAGTGAATTCGTGTGTTTAATTAACTTTGGCACTAGCTT
CGTACATAGGTTTTGCTATATAGTTTTAACCAGTCCTGTTTCTTCTAGAATATGCTGTCT
GATTCACCGTATCATGGTGAATCTAAACTATCATTGTAGTAGCAATCTAGCGAGGACCTA
GCCTCAGTGCTAGAATTTTGCAAATCTACTGCGAAGTGAAGAATGGTTTCCCTAGAACGG
TCGCCGTTCTCAGCACAGCGAGGCTACCAATCTAGTCTAGTGGTAGTGGACAAGGAAACA
TACATTACAAGCAAGCGAACGGTTCCCTCTCACATCTCATAATAACCCAATAAAGAAATT
TAACCTTGATGAGGCAGCTGCACGGCACTGCAAGTTACAGTTCTCGACACAATTCAAGAA
ATCCGCAGCTCATCTGGCAAATGTGCCGCTATAAGCTTAAACCACGGGTACATGCCGGCG
AAAGCAGGGACGCTAAAACGAGGGCCTCACTTCCATAGCTTCCGCAGCGACATGTTCTTC
TCGGTATCCTTCTTCATCACCTTCGCCACAGCCATCTCGAAATCCTCCTGGGTGACGTGC
ACCCTTCTCTCACGGAGCGCAAACATTCCAGCTTCTGTGCAGACCGCCTGATGATAGATC
AAAGTTAGTTAGACTCGTGATGAATTGTTTGATGCACACTACTTGAGACATAATACCGGC
CCAGACATACCGGCCCATACGTTGGTCTCAAGACCTCAACGGGACATAACTTAATACCTG
CTACCAGGACCAGGCTCTGAGTTTATAGTAATTTAGAATGGGTAAAAACGGTAGCTGGGC
CTGGATTTCTACATAAGTTCAATGGGACATTTTATCTGCCGCAGATTATATATGTTCTGT
AGCATGTGCTCGCCTACATTGTAACTTATTAGCATGGTACAATTTAGAATGTATTTTCAG
TTTATCATAAATATATTAAAATTTGAAATGCTCTCTACAATGGTAACAATAAATACCTTT
AGCTCTGCTCCTGATGCTCCGTTCATCTTCTCGGCAATTTTTTTCAGATCAATGCCACGC
ATCAAGTTCATTTTCCTTGAATGAATCTTCAAAATATCACCACGGGACTGAAAAAAGAGA
TAATTCAGAGTTAGCACCGATATGAGCAAACAATATGAACTTAATTATTGTGAGTACTGC
ATCACTTACATCTGCATTAGGATTTGGAAATTCGATCTTCCTATCGATACGACCAGGCCT
TAGAAGAGCTTGATCCAATATGTCTATCCTATTTGTTGCCATAAGAACCTTAATTTTGTT
CGATGCTTCAAAACCATCAAGTTGGTTCAGAAGCTCAAGCATAGTACGCTGAACCTCGCT
ATCACCGTTGCCGGATCCTGACTCCATTCTAGCAGATCCAATAGAGTCTATTTCATCCAT
AAATATAATGGATGGTGCATGCTCCCTACCAAATTCAGAACAAATGTGTTAGCCTCCGGT
ACAAATAAATAGATAATGCAAAGATCCTTTTACAGGGAATCATTTCAAAATCTGACTGAA
ATGGTTTTCCGAAAAAGAAATCTGACAGGTAAATAGGAATAATTTGAATGCAGCACAGAC
GGATAGTGCTTACCTAGCCATCACAAAGAGTTCACGGACCATCCGGGAACCCTCTCCAAT
ATACTTCTGAACCAACTCAGAACCTGACACCCTGATGAAGGTGCAGTCGGTGTGATGAGC
AACTGCACGAGCAAGTAATGTTTTCCCCGTACCTGGAGGCCCGTATAGAAGGACGCCCTG
AAAAAGCAAGGATAATTATTTACCACTGAATAACTGGCTGAACCAATGCCAAATAAAGTG
CAAATTGGTACACAAACTCAAACCTTTGGTTGGGCAATTCCGAGACTCTCGAACAGCTCA
GGATGCTTAATGGGAAGCTCAATCACCTGAAAATCAAGTTGTTAAGCCAGAGTGCTAATG
ATACAACAAATGTACTGTACATTGAATATATTTACGAACCTCCTTGATCTCTTTAATTTG
CTGATCAAGCCCACCAATCATATCGTAGGTAGAGTCAGGAACCTTCTCCACCTTCATAAG
ATTAACCAGTGGATCGACTTTGCTGGGCAGGATAAGGTGAAGCATGTAGCTGTCGTTCCG
AAGAGCAACTCTTGTTGAAGGGGTTATCTTTGTAATATCAATACTTTTATCAAGATCAAC
GACATATTTGCCTTCTGGATGAACCTGAGAGATCGCACTTAACCATTTAGTTACAGTAAA
AAAGGAGACTGGAACTCAGAGCTCCAACTTATATACAACATATAGGCCAACAGAACCAAG
AGCCTCAGTACAACATAACTATGCATGTTTTATGTTACACAAAATTGCAACAGACTAGTA
AGCACAGTGAGCCACCATATGCAAGAATAAAGAAATTATGAGCACAACTGAACCAAGCAA
ACAGCCTTTTTGGCAAACTCTATTATCATAATTATTTGTCAGCTTTAAATCGTTGATATT
CTTACAGGCGAAACGAACAATGTCACATGAAATGTGAATTCCTGGTTCTGAACACTAAGT
TGAACATCACAAATAAAACATTAGTTCAAGTTTTCATTCCATTGCATGTTTAGCCATATA
GAAACTTAAAAAATGTTAACATAATACAGTCATGCACATGAGGATGTCAATATATCACAA
AGCCATATACTTTTAGTGTCCTTTTCTCCTTGCTAAACAAATTTTCCTTTTTTAATTTTT
GTGTTAAGGAAATCAAGTGGCTACTTTTCCTTGCCAGACAAAAATAATGTTCCACCGAGG
ATAAAAACATATGGCTGACCTACCCAATTGAGGGTTTGCAACAAAATACTGGTCATCCAT
TGTGCCTAAAGCAAAACAGATGTGCACAAGCATAGCTTGAAAGAAGTAACAGTGAAACAT
AATGTACCTTGACTAGAACCTTTGACTTGCCCATAACCTTCACAACCTCGCCAACATATG
AGCCCGGTTCTTGAAGCAGCTGCAACTCTTCCCGGAGCATTCTAACTGGAATACCAAAAT
TGTGATGAGCATTTAAATTTTCAGCACAAGAGATCACACATTATAATCAAACAAAATTCA
ATGTCTCAGAAGCATTCCATATTCTAAATGAACAACAAATTCAATACCCCAAAAAAGCTG
TTGAATTTCAATTAACGAAAGACATGTGAGCAGAGTTAGGACTATTTATACACGCTAAAA
AAACAAAATTTCCACCAATCACGAACATGACGCATAAGTGGGACGCGTGAACATCACCAA
AAGAAGCCTAAAATCGGGGACACTATCTACACGCCATCGGATTAAGCATGGTTGAAGCTC
GGAACAAGAGGTCCAGGCGCAATTGGATCAAGCGAATCGCAATCAAACGATATGACGCAG
CGGATCGACTTTTCTGCCATGACAGACACGCGCACATGGGAGGAACTAGGGTTGCGCGGC
GGACTGGAAACAGCAGACGGAGGCTGGGGATCGGGGCCGTGCGTACCGCGAGAGTTGAGG
TCGTTGCGCTGGGCCTCGAGGCGGTTGAGGTTGTGCGTCTTGGTCCGGATCTGGAGCTGC
AGGTCGTGGATGTGCTGCAGGTAGTACTGGCGCAGCCCCTCCCCGCCGCCGGCCCTGCCC
TTGGCCGACGCCGCCGACGGGTCGTCGACGCTCGCCGGAAGCGCCGAGGGCTTCGCGATG
TCCATCGCCACCGCCGCCATCGGGGCACCCTCGTCTGCTCCGCCGCTCTGTAGGTGGCTC
GAGTCTGCTCGGGTTCGAGGGGAGCTTTCTTTTCCGGCACGTTTGGTTCGCTTCTGGCTT
TTGGTTCTCGGGGCTGGACGGGCGTGCCGTATATGACGGGTCGATCGCCCGGTGGTGCGT
GGTGCGGGGTGCGGCACGGTTCGGTTCGGAGTAGTAGGTGCGAGAAGGGGACGGACACGG
CCACAGATCGGAGCGGGCACTGTTGACCCACACTTTGTATTGTACTCCCTCCGTTTTTCT
TTTCAGAGATTTCAATATGGGCAGTGTGTGCCGGCCTAAAACACTAGACCGCTCGTCCGT
GTCTCTTTGGATTTGACATGCACGAAACCACCAAGACGGTTAGATGGCGCACGCACTCGC
ATCGGAAAAAAACGGTTTGTACTGGGATCAGTCGTCTTCTTCCTCGCTCCCACGAACTCC
CCCGCATCTCCTCCTCGCCTGATCACTCCTTCCTCCTCTAGGCTCCTCTTGATCACCCCT
TCCTCCCCTAGCCTCCTCTTGCAGCTCCGCGCGCAGGCTTTCGTCGCCGTCGCCGTCGCC
GCTCGTCAGAGTAGCTCATCGCCGCTCGCCGAAGCAGCTCATCACCGCTCGCCGGAGTAG
CTCGTCGGCTCGGCGGTTGCCATGTTGGTGCCCCGTGCAACAGCCGCACCCTGCGGTTGA
AGCTTTTGTTGAGACCATTGTGGCTCCGGTTGGGACGACTGGAGCTCGCTGGTGTGCTCG
CTGCCGCTCATCCCCGATGTGCAACTTCCAACAACAAAAAAGAGCTCAGGGGAAGATGCC
GAGTGCTACAATCGACGACAAAAAAGCTACAACTAGCAACAGGAAAGGCTTCAGTCGGCT
ACAAAAAAAACTTCGACCAGTATACGACGGGAGCTATGGATGACCAACAAAAGTTACAAC
CGGTGACAAAAGTGTTTCATCTAGCGACGAAAAAAGCTTCATCCGACTATGAAAAAGTTT
CAACCGTGAAGACGAAGCCATGGACGAAAAACGAAAAGTTGCAACCGGCATTTACAAAAG
TTACAACCGCATTGAAAAAAGTTTCAAACATCTTATCTCAGTTGCGACCCGCGATGACGA
TGACGTCGTTTTGCTGCAACCGTAGTAGATATTTGCTACCACCGGGGATTGAAATTGTTA
CAACCAATATTCCACGGCTGATGCTGCTGCTCCACCAAGCTCCCAGGCCATGGTTGTAGA
AAAACATGACGCCTGTTGTAACAGGGCACTATGTTGGTTGCAGCTTTAGCTTGGTCTCGT
AGAGAAAACTACAGCATGCAGGGGCTCCGGCACCCCCCGACAGCATTACGGGAGAGGAGT
AGGGCGTGTGCGGGCAGCCATGGATGCCTTAACAAAGAAAGTGAAGGTCAATGAAAAAGA
GTCATGGAGGAAGGGAGCAACTGGAAAAGGAATGAGGAAAAGAATGAGACGAGGAGGACG
AAGGGAGAGAGGCACAGGATAAGATTCAGAAAGAGATAAGGGAGAGGCACAGGATAAGGT
TTACAGTTAGGAAAAGAAGGGTCACCACATTTGTTCCATCCAAATAAACGTTTACCTTTC
AATATAGACTTCATACAAAGTAAAATAAATTAATTTAGAGTAATTTCAACGCGTCGATCC
AAACGAATGACGTTTTTGTCTGTTTTGTCTGTTTGGATCGGTGGCCCACTCGACGTCCGT
CCTGTTTAACATTTTGGGTCGGCGGTGCATCCAACATCCGCGACTCATTTTATGTCCGCG
CACGCATTTGAAAAGGCATGCGGTCGTAGATCAAGCCAACAACCATATCGTCGCCCAAGG
TTCATGTTGGCACCATGCCAACGGCCGGCATACAATGCCAGCTTTAGAAAACACCATACA
GTTTATGTTGACGCACTTGCCAGCGGTCGGTACACACGCGAGCACACAAAAAGGGGCGGG
AGTTTGACCACGCCATCGCGGTCGTGGTCATGCCAGCACACTTGTCGGCATACAAAAAAG
GATGGTGTTCACCGTCATAGTGTTGGAAATATGCCCTAG