Contig Data
morexGenes
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Map Locations of contig_56258 (6005 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location No map location




Predicted Genes from contig_56258

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69324 1 207 bp MLOC_69324.1 Available Available None
MLOC_69325 3 2215 bp MLOC_69325.1 Available Available LOC_Os03g11590.1, FRAME:-2, EVALUE:3e-180, 13103.m01311 protein integral membrane protein, putative, expressed





CDS Structure of MLOC_69324






CDS Structure of MLOC_69325






Contig Sequence (6005 bp)

>contig_56258 6005 assembly3_WGSMorex_rbca.fasta
GTACAGCACGAGCACGAGATGGGTTGCATTAGCTCAGTCAGGCTCAACCAGATCACAGAT
GTAAGGGGGCCAAAAATGATTTAGATAACCAAACATTACCTTAAGTGCTACTTCGTCCGT
CCCGTATTAAGTATTGCTCAAGCGGATGTGTCTAATTGTGCTTCTCACCCAAACGGTTTG
GAGCATCTTCAGTCATTTGGTCCCCAAGTGCCTGAAATAGCGTCGCTTGGGGGCAAACCG
GCGCTAAATTCAGCATGGGGGCCTCGGGTCCCAGCCGTCCCCCAAGGTCGCCCCCCAGCC
GGAGCTTTTGGCCCAAATTCGGCTCACTTTGGACACAAATTCAACAAAAACTATTTTTTA
TGACAAAGTTCATCACACAAATCAATACAAATCAAATAGTTCAACAAAGCAAGCTCATAA
TTCGAACACAAATTAAAACAAATCGAACTAGGCGTTGCCCTTGAGACTCCATATGTGTTC
CACCAGATCGTCTTGCAGTTCTTGATGCACCTGTGCGTGTCGGATCTCCTGGCGCATATT
GAGAAAGGAAGCCCATGTTGCCGGTATCCGGTGATCAACAAACGCAAGAGGATCCTGCAT
GAAATATGGTTAAGTATCAAACACTGGCTCTTCCTGTTAGCTCTCAATGATCATGTTGTG
CAAGATGACACAATAATTCATCACCTCCCACGTATGAGATTTCGACCAGGTCAGAGTGGG
GTACCGGACAACAGCAAATCGAGATTGGAGCGCACCAAATGCTCGCTCGACATCCTTCTT
GAAAGCCTCCTGACACACGGTTTGAGATAGTCTTCACAAATATGGACCATCTTGGATAGA
TACCATCTGCTAGATAGTATCCCTTGTTGTAGTGGCGTCCATTGACCTCAAAGTTCATCG
GAGGAGCATGACCTTCAACAAGCTTTGCAAAGACATTCGAACACTGCAATACATTGATGT
CATTGTGAGTTCCTGGCATATCAAAGAAGGAGTGCCAAATCCATACGTCCTGTATGGCCA
TTGCCTCAAGTACCACACTGCAACCTCCTTTGTACATCCCCTACCAAGCAAATGGACAGT
TTTTCCATGTCAATGCATGCAGCCGATGCTTCCAAGCATCCCAGGAAATCCTCTTGCTGC
ATTATGTGCTAGGATCCGAGCAGTGTATTCAACATTGGATGATCGCAAATATTATGGTCC
AAACACCGCCACCACTGCCGTGTAGAACTTGTACAAACGCTCAATGGTGGTGGACTCGGC
CATGCTTCCATAGTCTTCATGTATATCACCGGGAGCTCCGTATGCAAGCATCCTCATAGC
TGTGGTGCACTCCCGGAGGAGAATCCAACCGTACCGGTGTAATCCTTCTTGCAAATGAAA
TAGTTGTCGAACTCCCGGATAGCATTCACAATCCTGAGGAAGAGCTTCCGGCCCATCCGA
TAACGATGCCGAAATACTTTCTCGCCGTGCACAGGAACGTCGGCATAGAGCATGCAATAG
CCCTCCGTTCGATGTATTTGTTTGCTCTTGCGGCGACCTGACGCTGAGCCACCTCGCCGT
GGCTTGGCATCGTTCGCGAACAGGCCGGCCAGCGCGGCAAGAATCATGAGGTGCTCTTCG
TCTGTGGTGTCGTCCTCGTCTTCCTCCTCCATCAGAGCCACGAACACGTCCTTGTCGCCT
GAGTCCATGGCCAAGCAGGAAAATGACCGAACACCTGGAGGGCATGGTGGGTGGGCAGCC
GCCGGTATCCCCGCCTGCACGGTCTAAAAAGCTCACCCAGGAGAGCGGGATGAAGGCTGT
CACGAAACCGACGGGGAAATGACCTTTTTTAGCGACGGGGCAACGACTGTCGGCATGTGG
GCGGTGTCGGGATCAACATGTCGGCGAGGCGCCCTGTGGCGTGCGAGGGTGCATCTGGCG
GGGGAAAGGCGTTTCTCGCCTGACAGTGGTGTCACACACGCCATTTTTTCTTCTGCCGGA
GCCCCAAATGCCCCCCAACGCGCTAGGTTCAGCCTGGGATCGCCGGCCCAAAAAATGAGC
CCAACCGTCAAAAAAAAAAAAAGAGCCCAACCGGCGAAAAACGACGTCCTGAGGACGCAA
CTGAGCGGATTTTTTTAGCATCGACGAATAAAAAGAAGCCTGTTGTCTTCGCGAGCCCAT
CTCCAAGCGAAGATTTTCGCCTGGCTTGCCTTTCATGACCCGTGTTGTGCATGCAATAGG
CATCAACGTGGAGGGCTGCAGCACCAACCGCACTGTCCACTACGTAGTCAACAACCGGAA
ACGATCTGCCACCCTTTTGATGGAATGCCTCTTCTCTAACTGATTAAGTTCGACATGTTA
AGCAGGGACGACTGTTAATGAGATGACAGGTCAAGTTCAACCTCATGGCTGTCCCCTATG
CATAACATTTGGCTCGACCAACAAGACTAACAAAATCAAAAGTTCCAGACTTGCATAAGG
CGTCAGAGTACGTCTACATATTCATGAACCATGACTAATCTGATATGATGTCAGACAAAA
TTTCTTTCACCCACAAAGGAAAACAAGAAACTTCTGCCACGAAGCGAATAAGTACATCCA
TTGTATTTCTGGAATTTGGTAAATACTAGCATACATGGTTCAGTATACAGAGGATTTGAC
TCTAGTATGTTGAGTTGTCTGGTACCCTACACCACCACCACAATCCTGCCTAACCAATGA
AAAGCAGTATACAGTAACAAAGATATTGTAGAATGAAATTTAGTTCCTCTTGAAATATCA
ATGTCCTACAGCATGTTCAGGATTTCTCATCTGAGATATATCACGAATGGGTTGTCGAGG
GAAGGTAAAGAAAAGCTTATGAGGAGGAATGCTTTTGACTTGAATTGCTCTCATGCCCGG
GCTGAATCTGCAGCAAATTCTGCCCCTCTTCATCGTCCTCTTCCTTTGGCTCAATCTTGG
GTACCTTGGGCTTTGTGGTCGATTGCTGGTAGAGAACGCCACCAGACATGCATATCAAGA
GCCCAATTGTCCCCACCAGGGATGCATGCTTGTCCCAGATAAGCAGATTGATCACGACGG
TCAGGAGCTTGTTCACTATACCGAGCACCGTAAATCCAGTGGCAGAGATGGCCCGTCTGC
AGGAGAATCCGAAGAAGGATATAGATAACCCGAACAGGCATGACAGAGCAACAGGAAGGA
CCACGTCATAAGATAGCCAGTTTGTTGTCATCTTGGAGCTGTCGACCTTCATCTGATTGA
ACTCTCCCATTATAAGGAGCTCAAGTGGGAACAGCAGCAGAGCCTCAAGGTTGTTGTAGA
GCACAAGGCCCCATGTGTTCAACCCGATGGTCATGACGACATGTTTGATGTACACGAAAT
CAATAGACATGCTCGCCAGATAGGCTATCGCCCAGCTGTAAGCAGTCAGGGTGAACTGGT
TATCCGTGAAAACATATATCACACTTCCACCAAGTATAGTGGAAAGTGAGAGCCATGTCT
TGAAAGATGGGCATGGTTGGTGAAGGTAAAGTGTCTCCCCAATGGCCACAAATATCGGCA
CAGCAGACCGAAACACGATGAAAGTGTCCACATTGGCATGCATCAGGAGCTCGCTGTTTG
TGAAGATTGAGATGTAGAACATAACAGCAGCAGGCAAGAACTTCCACATGGTTCTCAAAT
TCAGTCTATCAGGCTCAATAAGCTTTAGCTGTCCACAAAGGAGAACTCCAGCAACACTAG
TGAGGTACTGTAAAGCTGTCAGTGCTCCAGGGTAGGGAAACTTCATGATTGCCCATTTGT
TGATAATCGAGAGCAGAGATGCTGACAGGCAATAACCAGCAGCCACACCATAGACCGAAG
CATGGCGCATAAGAGTGTTCCATGTGTTATTCCAAGCTCCAGTTTTCTCGACTGAACCGT
CTTCTTTTGAGGGCTCTGAGAGATTAGACATCTGCAACCATTTAAAATAGATTTATTAAC
TATGAAAGTCATGAAAAAAGGAAGTGGAGAAGCCCCAGACAGTTAAATGTCATATACAAA
TGTAGTAACTGACAGAGCAGTGAAGTACTACACAATTTTGTGCAAAGATATGGTTACACC
TTCATGACCCTCCTATACTCTACCCTGCCCCTGGATCTGGGCCTTGAATCAGATTCCATA
CATAACTTGTAGAAGGCAAGTTAACATAGTAGTTCTGATGAACATAATTATCTGCTTTAC
TGCTAAAAACCCAGTAACTTGTGCAACTGAAGACAATCGACATATTTTTGCTGAATTTTA
GCTAGCATTGACTTTGAACGAAGAATCTCTCTACGAGGAAGCACCCATGTGCGAACAGCA
TATATATTTCAGAAAAAAAGATAGTCCAAAGGCATGATCCATAAGGTACAAGCAACCAAA
GCTGATTCTCGGAACCCAAGAAAAAAGGTAGATTGAATGATCCTGACAAGCATGGAGAAA
CTTTACAGACAGGACACCTCGAAAAAGAAAGTACCCATGCACTTCTTATAATTGTCTCTA
GCGAACAATCATCCTCTTATATATTCATATAAAGTACAAAACTACTCCTTAGACATTGAT
CTGATTGTGCTGACTCTGCACCTCCGTATGTTCTCCTTTGGTCTTCAGCAACCTTTTGAG
GTTAATCACGTAAAGACTCCAAACGAAAATTGGAAACAGACAACCAAGTACTAAAAACAG
GTTTCAGCTTCCAAAAAAAGGGTCAAAGGAAGAAGAGGAAGCAAATAGCAGCACCAAGAA
AGAAAGACTCCATGACAGATCTAGTAACATATCAATCAACTATGCCAACCAAAAAACAGT
TTCAACAGAACTGAAGAAACCTAGCCAAGAAGAAGCAATACCTGGAACCGGCCAACCCGA
GCAGGAGCCATGGTCGCGAGCCCAAATCCAACAACAGCAAGCGCTCTAGCAACGAAGCAT
GTATCCTTTTAAACAAAGCCGAGGGTCAGGGCCTAAGGTGGCAGAGGAGGAACGAAGACC
AGTATGCAACAACCACCTATCTATGTGCCCAATCAGCTAAGCTCTCATATAAGGTGGCCA
CACACAACGATCCATTTGCCCACGACGGCCATGTTCGGCATGTGAGTCAAACATGGTAGG
AGCACGTCACAAGCGCATCAACCAGTGGCCATCAGATCGGAGAACGTGTAAGAAAATTCA
GCACAACACCTAAGCGCTTTGGCCCAGTCAAGCAAGACGAGGTCGCAATTATGCAACGTG
CAAGCGAGTTGCTCACAAGAGAACAAAATTAGCATAGCGACGCATTACCTCAGGAAGACA
GGGAAGCTTCTCCCCCCCCACCCCACCCCGCGCAGCCTGTGGGAAGAGGAGATGCCCTCA
ACTACCGCGACGTGACAGCCCCGCCCCTATGCCTCCATGACGCAAGTTAGAAAAGTAGCT
GCAGGCACACGGGGTGTTCCCCTGCACTCGCTAGCTGCTGACGACAGCGACGAGGGCCTC
GCGATCGAGCCAGCTCAACCGACTGCTGCGACGCGCCATGATTAAGATTGAAGCGCTGGA
GCTAGTCGCTGAAACATGCGTACATGTGGCGGAAGTAATGGCACCATCCCAATGATTCAG
AGAGGAGGAACTGGAGATCGTTAGGTGGATCCAAGCCGCCGGTCAGGACCACGGAATATC
CACTAGCACAGTTTTTAGCAGCGAAGCCGAGCACGTCGCGACTGTGAACTGTAACCCCGG
GCCAAGATCGGAGTTTGACGCCTGAACCGAGCAGAGAGGGAGCGGGGGGTGGAAGCAGAG
CCTCGCGGGAGGCGGCTCACCTTGGTTTGTTGCGGTCGAAGTCACATGCCCCGCTCCTGG
GCGGGTCCGCCGGCGGTCGAGAAGGGAGAGCGGGTGGAGGGGTCGAGCGAAGAGCGGGGT
GGTGGTGTGGGGATTTATCGAGGGGTTCGGGCGGGGCAATGCTTCTGAAACGGCGGCCAC
CGGATCTGGACTGGACGCTGGGGGGCGGCGGGGGGGGGGGCCCGCGCGGGGTGGGGGGGG
GGGGG