morexGenes - Barley RNA-seq Database

Contig contig_56213

Source Contig contig_56213

Contig Data

|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|

morexGenes

Links

Map Locations of contig_56213 (4256 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location

Predicted Genes from contig_56213

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_69301	3	3980 bp	MLOC_69301.1	Available	Available	LOC_Os02g50230.1, FRAME:-2, EVALUE:4e-121, 13102.m05700 protein peptidase, putative, expressed
MLOC_69300	1	1152 bp	MLOC_69300.1	Not available	Available	None

CDS Structure of MLOC_69301

CDS Structure of MLOC_69300

Contig Sequence (4256 bp)

>contig_56213 4256 assembly3_WGSMorex_rbca.fasta
TTCATTCATTTTGTTCCGTATGTAGACTCATAATGAAATATCTTAAAAGACTTNNNTTTA
GGAACGGAGGGAGTATATTGAATCTTATGTCATATTAGAGCAACCACATTTTATCTGACC
AGTTGGCTCCATCTGAAAAACAGTAGTTGATTCCTTATGATGGACAAAAAGCCAGGGCCG
GCCCTACAAATAAATCTCACTAGACTTAAAACAACTTATGGAAAACCAAAAAGGATTTAG
ATGAAAGTACCCTCACAAATCTTTTAATATTCAGATCATGAAGAACCATCCATCGTTAAA
ACAACTGGATAGAGTACAGCAGGGCAGGATTCATGTGGGGAAGGTGCTATAAAACTCACC
GCCTAATCATATGAAATCTTATTGTATCGTTGAGGCAATGAAGGCTTAACATCAAGAAGT
GAAACTGGGGTGGGGTTTTAGAAAATTTCATGTCCACAGAAAGCGGCATCAGTGGATCCT
TTTTGGAAAGACATAGAGATACATTCAGCTATTCAATCATGCACCAGCTTTGGCTGCAAG
TGGACTACTTGATGCGGCAGATGGTGGCTGGTGATGCATCGCTCTGGCGTAGACCGCTAC
ACAGGGAGCAAGTGGCAACGTATGCCAGCGCTGGCACTCCCCCAACGAATGCTACACCAG
TTCCAATCAGGCCCTGCCTTTCACCCGCCGACTCTCTAGGCACATGGGTGCGAGGTACGT
CGGCCTGGGCAGTCCTGGAGCTGCAATCGTCCCTGGAGCTGTCTGGAAATGGCGGTGACA
CTGCCCTGTTGCTCCGAGTTTCGACACCGTGGCTTGAGGCAAGGCTGGGCGAGGCTTGAT
GTCGTTGCGTGTCTGTAGTTGAGGGCACCTCCTTACCTATTTGTAGTCACTTGGTGAGGA
CGGTCGTGTGTGTGTGTGTCCCTACTTTCTGGAGGTTGTACCCCCGATGTCTTCTTGTTC
AATGAAATGAAACGTAAATTCTTTTGCGTTTTCTCGAAAAACAAGGAGTGAAGAGTAAAG
ACCAAGATTAAGTGTGGCAGATCAGATTGCCAAGATGGATCAGTAGCTAGTCCACGTTTC
AGTCACTTGTCCTCTCATTTCAAGGAAACTGATGGATACAGCTTTGGATAGCTAAACATC
CTAGCTCCTTTGATGCATCATTTCAGATGCACTAGGCAGAAGCACTGAATGTCTGCACTT
GGTGGCTTTGCTTGGCAGAAGGCGCAAGGAAATTTTGGCCAGGTCATACATCAATCCATT
CAAAGATCAAAGGGAAGCTTTGATCACAGAAAGCTTGTACCGAAACGGCTCAACAGCTAA
GCAACACTAGTTAGTCCATTATAAAGTTGAGCGTGTATCTGAAAAGATATTTTTTTCTGG
AAATTGCCGTACAGAGTATTTTATTTTCGAACCAAGTCTTTCTTAAAGGTATCCAAACAG
ACATAACTACTTTCCCCTTGAATAGTTTGGGGAAAAAATATTTTTTTTCTTACTTATGTG
TTAAATTTCCCAATTTAGTCAGGACTCGGAAGTTCAAGTTTCCCCATCACTGAAGATCCT
AACTGACCAGTGACCACTGCTTCATACTCGAAAAACAAGCACTTGTGAAGGGGACTGATT
TTACTGCAAATCAGAAGTACAAACTTACCACCTTAGATACTAAACCTTGTATATCTCCAA
TATATACCACCCCACTGTCAGGTACCTGACGAGTCTATTTCTTCAGCAAGCATCAATTCT
CTTCAGATAACGATTCATGGCTTATCAGACGGCCATCATCGCTCGTTCTTCGGTGTAGTC
GCTCGACGGTCCAGATGGCACGAATACTGTTTATTTTCCAATTGTCGTAGTTACTGTAAC
GAGTAATCACCATTGGGTTAAACCTCTGCCTATAAATACAGCCGGGCTGTGGCTGGGTGA
GGATTACGTTTATTTTCTTCTCTATTCTGCCGAAATGGCTAGAACAATTATATAGATAAT
ATACTGGGCCTCTTAGATCGGCCAGATCCCCAAAATTCCTCTCCAAATCTGTGATCTATA
AACCCTAAATCTTAGTTACGATCCACAGGGATCCAACACCATCCTCACAATTCACACATA
TGTTGTAAAACGATTCTTACACATGAAAAATTGGTGGACAATAGAATAGTCACGCACAAT
GCATTGGTGATGGAATTCTAGTAGTTGTACAAGAAGGGGCATCATCCTAGTCAACTTTGG
TAGGATTTGTAAGAGATGTACAAGGGGGATATCATACTATCATTCCAGTCAATTTGGTGT
TTGGGGGATCAATTCCATGCAGATCCAGAATTTAGTACGAAAGAGTACATGACATATGCT
ATTGCAAATCTGATTTCGTCTACTTTCTAAGAACCTGCGTGAATAGCTAATAAGTCCATC
AAAAAGTAAGAGAACAGATAACTAGATGTCTCTCCGAGGTCCAATGCCCTGATGGGGATA
AGAATTATCAATAATAATCTCATCTGTAGGGCAATCAAGAGTCATGTGTTTTATAACTAG
AATTGTCACCGCTATTAGTTAAGTCTGTAGCAAAATTAAATGGTACTAGATGATACCCCG
CACAACATTGCGGGTTTTGCAATATAATTCAGTGTGATTTGGTTGCATGGAACATGAATA
TTGGGAGTAATAATATGAGAAATAAACTGAAAATACATATGATTTATTGGAGTAATAATA
TGAGAAATAAAATGAAAATACATATGATTTATTGTGTTTGATCATTGTGTGGTTGCACAA
TGTTTATTAAGTATAGTTTATCAAGTATAGATAGAACAATGTAAAAAAATTATCATGCAT
GTTTGTATGTTGATATGAGCTTTTTCCTATGCATGGTTTATCACTTTACCTAGATAGGTT
CTCACTGGTCTGTGGTACATTAAGCTGAAATAACAGGTTGGCTCAGAATAGTATAGAATG
GCCCCCATGGAGGCACTTGAAGCAGGAGTCATATCATAACTTATACCAAAACGAGATAAC
TAGACAAATCAAGCCCATTGGTGCCAATTTATTGGCTTTTGCCAGATCTGGTAGCATCTC
ATTTCAGTCATATATGCAACTTATCACGTGTAGAATGTAAATAACCATGATTCTACGAAC
AATATGAAATGCAGAAATGAATACCTTCGTGAGAAGGGCAATCTGAGGAGTAATGTCGAC
ATTGCATTAATTAGGTCTGGCATGTAAATAAACTGTAGGACGACAAGCTGCAGGATAGTG
AACCACATGCCCTTGGTGATCATCTCTGGCAAGTGCCTCGCGATAGCGTGCCCAATCTAA
AACATAGAGGTACCAATATCAGTTCCAATGCACTGTACAACCAACCAAAAGTAGATACGA
GCCCATAACCAAATTAGTAAACCCACCTCATGCGAAAGCACTGTCGCAATCTCAGCATCT
GTCTTGAAATGGTCGAGCAATCCAGTGAAGACTACAATCTTACCACCGGGCAAGCACATT
GCATTGATGAGCTTATCTCTGACGACGATGACCTCCCAATTGAGCTCATTGAGGTGCTTC
GTCTGTGGTTGCGCTCCGCGTGCCTTCCCCCGTCTCCGGCTCTCGGCGACCCACCTGTCA
TCGAGAAGCTCGTCGTCTCCCTGAGCCGCAGCCGCTGTGCGCGTGGTCTTGCCAGGCGAG
ACCCGGTGCATCACGTCCTCGGCATCCATGTCGCGGGCCTTGACGGCGATGTCGGAGGAG
ATGTCGCCGTAGGAGGCGTCATCGGAGTCGTCGCTGCGGCGGTCGGCGAGGCCGCGGTGG
AGGGCGCGGACGATGTCGGAGGCGATGAGGCGGACGCGGACGCTGTCGGGGTGGAGCGGG
GGCAGGATCTTGGGGGCGAGCTCCTTCTTGAGATCGGCGAACTGGGACTCGCCGAGCTGG
CGCTCGAGCTGGGGCGAGACAAGGACGAAGTGGGTGCGGTTGGTGTAGGGCACGGTCTCG
AGGTTGCCGAAGTAGACGACGACGGTCGCGCCGCCGGCGAGGAGGACCACCGCGGCGACC
TTCCGCCTGTCGTGGTACCACCGCGCCCCGCCGCGGCGGCGCGCGAAGTGGATGACCTCC
GGGCGGCGCGAGGAGGTGAAGTAGTGCCGGGGAGGCGGCACCTGCGGCTGCGCCGGCGGG
GGCCGGAAGAGGGCGGCGGGCTCGTGGCGGAGGGGCCCCCGGCTGAAGGACTGAATGAAC
CCTGGGCGGCGCGGGGCGGCGGGGGGGGGGCGCGGGGCGGGGGGCCGCGGGGGGGG