Map Locations of contig_5618 (5512 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_5618

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69272 1 336 bp MLOC_69272.1 Available Available None
MLOC_69271 1 2375 bp AK354437 Available Available None





CDS Structure of MLOC_69272






CDS Structure of MLOC_69271






Contig Sequence (5512 bp)

>contig_5618 5512 assembly3_WGSMorex_rbca.fasta
ACAAGGGTTCGCACCCCCTATAATACTCATTCCACACTTCAAGAGCTCCCGAGCACTGAG
ACGTAGGGTTGTTACCTCTACGAAAGGGGCCTGACCTTATACATCTTGCGTACAAGCTTG
TCGTAGCTAGGACTCAGCCCTGTCTTTTCGTACTCTACACGTCTATTGTCAGGTTCATTC
CCACGACACGCACACTCAATCCTTGTAAGCAGAGAGACTCAGACAATAGGTTGATCTCCT
AAGTTTTGCTAAGCTTCTACTCTTCTAGGGACCTTTTAACTTGGTGAGACTCTTCGAATT
AAGGAATGAAGTCTCGCTACCACAAGACGTTCGTGCCATGCAAGCTGATACAGATTCCAG
ATGGTCTCCTCTGTTATGCGCCACAAATTTCAAACAGAACAACCCAAATCATAGGAACGT
ATGTACTTGCACAACAGAGACGACTGCAAAATCATCGTCTGAAACGAATCGAGTTCTAAC
AGGACAAAACCCACAAACCAACAAGCGCTTGTTCTTGAGAATTCGACAGATTACCATTTC
TCTGCACGCATCTTTCTTTTTAGCAAAAGCAATCCAACTCTATCATTAGTGTCTCCCATG
AAGGCAGATGAGTCAGGATAGGAAGCACCGTATGATATGGCGCGATGACGAATCGACGTT
GCTAATGATTTGTGCAATGCCAGGTCTGTATTCAACTTATTGTATGCCTATAAACTTGGC
ATAGTCAACCCATCTGCAAAGGCAAAATGTTCAGCCAGTAAGTGACCACATCAGAATTTC
AGATTTGAAATCAGAATCGACCTCCTGAAGGCTAAAAATACTCACAGTAGAGAACCCAAG
AACGTGTTCCCCGTCCGAACCGCAAAGCACAGTGCACTCAGCGCTAATTTGTGGCGGTGT
AGTAACGGCTCAAGCATCCGCTGTTCGATCACTCCAGCCAGAACCTGGTACCTGTTGTAA
AACAAGTTGAATAGCTTTAGTTTTGGTTAATATTCGTCCAGACAAAATTTTCAGGTTGCC
ATATCCTTGTGTGTCCCATTCTTGTTATTTACTCGACGATTTTTGGAGCATTCATAATGT
CCCAACTAAAATGGGAGCTGATTTAAACAAAACATAATCATAAGAAAACTTTATCTTAAC
CTCTCAGGAAATATTAAATCACTCCATGCAAATTGAACATATCACATGAAGTAATAAACA
CGATATTGCATGTTACCTGAGGTTACTAGAAACTGCCATGTATACACCATAGGCAATACT
GGTTGAAACAATTGGGATATCCTCAACTTCGCCAGCTTCATCCTTGTTAACAGTCTTTCT
TGCCTTTATAATCGCATTGGTCACACCTGTGCCAATCTGAAAAAAGATTTTTCCCACACA
TTTTAAGCTTTTCATAAGGACTTGAGTATTAGTTCAATAGTAAAAATGGCACTGACTAGT
TGTTACGATATTATTATCTAAAAATGTGTTGTTCCTAAGTGGAACCAAAAACAAATCATA
TCATCACTTCACCATGGTCCTTGGCTTTTCAAATGTTCCCTTCACCTAATACAAGATCAG
TGGAACTCTGCAAGGCATACTTGTTCTTTATTTAAGAATTAACCAGCATATCTGATTGAG
GCATCAAGGTCGTAATATACAGTTGCAGTGCTAACATATTAACTTAACAAGTACCATTAA
ATTTACTGAGTTGCACACTACTAGGCTTCAAGATTTTCAATTAAACAACTGAACAGTGCA
TGACATAACAAGTGCTTACATAAAAAAAAAAACTGATCAAACCTCTTCTAAAAATTACTT
TTTGCATGTTTTTGCGTGAGTACTAAATGGTTAGTACCTCCGTCCCATGATATAAGAGCG
TTTTTGACACTCATTTTTCACACTACACTAGTGTCAAAAACGCTCTTATATTACAGGACG
GAGGGAGTACTTCCTACAAGAATAGAAAACTTGAGAAAGGGAAAATAATTGTTCTCCTCA
TGCTATTTTAAGATTTAATAGAAAATGGAAGCTTTTACTGATTCCTTGTATAGCATCAAA
GCAATGCAATTACAATTGAAATTGAATACAAACAAAATGCTAGTGCCGTATGTCAGAAAC
ATGAAAATTACAGCATAACAAACTTACCAGAGATGCACTCGTTCCTACTGCAAAAAGTTT
TGCACCGTTCCTCTGAAAGAAGTCAAAATCGTTAGTTTGTACCAAACACGCTCTAAACAA
GTCACAGCAGAGCCCAAATAGTTATTATTTACCATAATAGCTCCAAATCTCTGCAAAAAT
GTGTACGAACTTCCAGCTAAAGCAACCTGCAGAAGAAGTCATATAAGTTCCCTTACAAAT
TTCAAGGAGAAGATACATATTTTCCCTTTCAGAAAAGTAGACTTTTCATCTGTACCACTA
GGAAAGGGAGAAATAAGTTGAGGTCATGTTACCTGGAATGCATTATCCGGGCAGTTGTGG
AAGAATTTAGCAATAGCCCCAGCATTCACTGCCAGTGCTGGTTGCAGAGACACAGTAGGA
GCAGGAAGCCAAACAAGCATGAAGTCTGCAACTATTGCCATGACCTTGAAAGTATTGCAA
CAAGAGATTAAGACTCATAATCATAAGAGTTCTAAAAATCATTTGCCCGCTTCAAATCAA
GTACTAGTTTATTTTTTAGATAAATGTAACTTTTGGACTACAAGATCACCAACATGAAGG
CGAGGATGCAAGTGGTTACTCACTTGTCAAACTCGCCCACCCCTATATTTTAAACACTAA
CCTACTAAATTAGAGCAGCACGATTTCCGGTAAAAAAAATAGAGCGGTAGAACACGTCTC
TTCTTTCAGGGAAAAAATGCAAAAGAACTTTGTAAAGCATGGCAGGTGGAGAAGGAAAGG
GGGCAGGTCAGTGTTGTTAGGACTGGGTCTAAAATGCAGGTTATATATTTTGAAGATCAA
TCTGTTTATTTATTTTGGCAACAAATCTAAAAAAGGTTCATTTGGGAATCATAACATATT
AACAACCTCTAGCACAACCCCGCAAAAAAAAACCTCTAACACAGCTTCAGAGTTAGGCCC
CTAATATTAATTCTTTGATCTGATTTCTGAAAGGAAAAAAAATGATGACTGAAATTTCCA
ATCAGAAGTAAATTGAGCTATTCAACCCCTAATATGAAGGGGGTTGCATAGTTTACCAAG
GTTTGCAAATGTTTGCACATAATACTAGCTAAGTCGGAAAAAAGTGTGCCTTTTATCAAG
AGAAGTTGGACTGAGTGCTTTTATTAGCATATAATCTATTTTTGGAACATAGGTAGTAAT
TCCGAGTATGTGGAATTGAAGGAAAAGTCTCGCCGGTTTGTAAAGGATGTTCAAAAAAAT
GATTGAAGCATACCACATCGGCAATCACAAAGTCAAGCTCCTTGACAAAGTTCTCCCTCC
TTCGCTCATATTCTGCTGCAGTCTAGCAACATTAAAAGAAATATGTCAAATAAGTTGTAC
AGAACTCAAATATGTGTTGCAAACTGAATCACATAATAATGCAATTGCACTCAAATAAAA
GCAAGTGCAGACACAGAACAGTTTCAGGCATACAATCGAGACAAAATATCTTGATGTTTC
TAACAACAATGCACCCAAGTACACTGTGTTGCATTGCATGTAGTTTCTCAATTCTCAACT
CTGGAGATGAGCAAATGTTCTCCAGGCCCTGCATTAACTACTCTCTCCAATCCAAAATAG
GCTCACAAGAATTAAGGGTGTAAATAAATGTTAATGCTACCCTTCAATTGTTTCTGTAAC
TTTCTAGTTTCCCTCCCAATAGAGTTATAGGCTCAATGTGAATATAACGAGGGACTAAAT
AGAAACAACATGAGGAAAAGTTCAGTGGGAGTATATATTCAAAGGACTTAGTGTGGATCG
GAGGGAGTACATATTCCTAGGGTACAGAGTTTCCATTCGGCTGCCACTGGGATTGTATTT
GAAGGATAGGTCCACAAAGAGTCAACTGAAGGTGACTAGTGTATACTTTGTTTTACTGGA
AAAGCAACTGCGTACTGGCCAGCAGTCCATATACTGACACAACGAGAGAAGTTCTAGTGC
TACCAAAGAAGTTTTGTGGTGCCCCTATACAACCAACACGCGTTAGCACTACTAAAAAGT
TATGAATTTTATAGTATTGCCATAAGAGCATCTACAACCGAAGCCCTCATATCCTCCCCA
AACAGCTGACCGGCCTGCCCGGTCACTGCCCAGACAACAAATCGCCATACAACCGAACTG
CGCATACTCGGCCCAAACGTCCGGCACCCCCATACACAACCCGTATATGGGTATGGGAAC
GCCCAAACGCGTCCGCTACGTCGGATCCGGCCCATGCTAGCCCATCCTGACCCCACATAA
AAGCATCACTATCCGCATCCCGAACCAAACACTAGCCACTCCTATCCACTTTCAGTCCGC
CCCCAAGCTCCTCTCAGGCGATCTCCGGCCTTCTCCAGCGTCACGGGCAGCGGATCCAAC
TCCGAGATCTCCAGTTCCGATGACTAGGACCTCGCCCATGCGGGGACGAGGAGGAGTAGG
CCATCCGGCTAGCTCTCCGCCGGTCTCGGGAGGAAATCCCAGCTCCGCATCCGAGTCACT
CCGGCGGGAATCCATTGTGTCCACGCAAATGGTGGCTCGAGGCACGTGGCCGCGGCCTCG
CCAAACACGGCGACCATCGGCTTGAGGTGTCGCGGCACTAGACCGAACATCGCCGGATGG
CGGCGCAACCCCTGAAGTGGTACCTCATCCCTACGACGTCGAGCTTCGAGTAGGAGGTCA
ACACCAGCATGTGGCATGGCGCAACCACTGCAAACCATTGTGCCAGCCCTGCAAGGAACA
AGGCGCGGCAAGCATCGGAAGCCCTGGAGGCCGAGGCCACGGGGCCGAGTCGCACGCCGC
CGTTGACAAGAACGAGGAAGCCCTCCGTGATTGCGTCCTTGAGAAGCGGGAAAGGAGGAC
GGTGCACGCCCTCGCAAGGGAGCAAATCCGGGCGGTCCGTGCCCTCGCCGGACTGCCACC
CAAAGAGAAAGAGGTCAATGATGGATCAAATAGTTTCGGCGGAGAGCAAATCCGGCTCGA
TCCGGTTTGCGTCTTCGACCACTAATTCCGCAACGAAGATGGCAAGGGTAGGGCGGTCGT
GGGTGAACTTCCTCCATTTTCATATCGTCTGTAGCTAGTAGAGCATGTCAATTTGTGGTA
GTCCGATACACTGACATGTATGAACTTCCTATGCTATGTGTCTGTTTAACTACGTGTGTG
TGTGTGAGTGTAACATTGCATGATTAGTATGGATTTGAGGGTTTGCTTTGAGGGACACGG
TTCCGGAACCCGGACTTTTGAGGGGTGACCGGCTACTGCCCAAACGTTCGGGCGCGTACG
CGGATGTACAGGGGCCAGATTTGCCTAGTCCGGTTGTATATGTTCTAAGATGTACTCCCT
CCGTCCCATAATATAAGAGTGTTTTCTGGAGAGCGGACGTTTGGAGCTCGGC