| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
No map location |  |
Predicted Genes from contig_55988
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_69140 |
1 |
2103 bp |
MLOC_69140.1 |
Not available |
Available |
LOC_Os04g42090.5, FRAME:+2, EVALUE:0.0, 13104.m04141 protein CPuORF7 - conserved peptide uORF-containing transcript, expressed |
CDS Structure of MLOC_69140
Contig Sequence (7483 bp)
>contig_55988 7483 assembly3_WGSMorex_rbca.fasta
ATAGCGGGCCGGGACGAGGGTTCCTCCCTCAGCCGCACGCTAACTCGTCGCACAAGAATT
TCCTCCCACCCCCCCACCGCCTCGCCGCCGCCACCGCAGCCAGATAAGAAAAGAAGAAGA
AAAGAGAGAGAAGGACTCGTCGGGAGGGCTCGAGATCTGTGTCGGGAGAGGGGGGAATTC
TTGAGATCGGAACCGGAACAAGTGGGCGCGCTCGGGAAGGGGTTACCATACCAATTTTTC
CCAGGAACCCGTAAGTTTCTTCGGCGAACCCGGAATGTTTTCCGTCTCTTGATTGTGCCG
CGCTAGCCTGTAGATTTCTGGTTTCTAGGTCTTGGTTCTTGTGCGCTGTGGTTGTGCTCT
TTTGACCAGATCATGCCCGCTAGTTTCTAGGAGAATTGATCTCTGGTAGTAGTCGTAGTT
TGCATCTGGATCTGGGATGTATTATCTTAGCTATGCCTTTGTAGATTGGTTGCTCCTAGT
AGTTACTATTGTTTTACTGGAAAGGCTATGATTCGGCGTTAGAATGTTTGGGGAGTTAAA
GTTCAGCGTAGAACGCTTAATTTACCGTAACTTGGCATCATGGATAATTGCAGTTGGATT
AGATTGTGTAGAAATAATTTTAATCTCGTATCTGCCCCCGTAGAGTCACTTAAGTTTTGC
TTGGCACACAGGTTCGTGGTTGTATTTTTCAATATGATTCCTGGCCTGTTATGTTCTACC
AGTATTCAGTTCCGGCTGTGACTATTAACCATGGAGTAATTGATATCGACAAGAAAATAT
TTGCATAGAAACGCTTTTTCTGTTATGTAACCATGAAAGTTTGCTAGAAACTTCTGTCTA
ACTCCTCTTTTCTCTCGTTCTGCAGTTAGTGAATGTTCTAATGGAGTCAAAGGGTGGCAA
AAAGTCTAGCAGTAGTAGTTCCCTGATGTACGAAGCTCCCCTCGGCTACAGCATTGAAGA
CGTTCGACCAGCTGGAGGCGCAAAGAAGTTTTCTGCTGCATATTCAAACGTGAGAACGAA
ACACAAAGTCTAGTTACTTCTGTTCAAACAATTTATCTCCAGATTTGTTGCTAACCATGC
GATTTTCTTCTCTTATACTGCAGTGCGCGAAGAAGCCATCCTGATATCGTTTTTGGCTTT
CCCCTTCCCGTAGTTTAGGATTTTTATGCAATTTTATTCTGACTCTTTTCTCCCACCAAT
CTCTCTGGCTTGCTGCTTCACGATAATCGACCAGTTCTCTAGTCTCTCTCCCTCTGTTCC
TCTCTGCTCTGCTTTCTGACTCAAACTGCAACAATGGCCGCCCCGACCTCTGCGATCGGG
TTTGAGGGCTACGAGAAGCGCCTCGAGATCACCTTCAACGAGGCATCAATCTTTGCTGAC
CCTCATGGTCGTGGCCTGCGCGCCCTCTCTAGGGCCCAGATTGACTCTGTTCTTGATCTT
GCACGGTGCACCATTGTGTCCGAGCTCTCCAACAAGGACTTTGACTCGTATGTGCTATCT
GAGTCGAGCCTGTTTATCTACTCTCAGAAGATTGTGATCAAGACCTGTGGGACTACCATG
CTTCTGCTCACCATTCCAAGGATTCTTGAGCTAGCTGAGGAGCTGTGCATGCCGCTTGCT
GCCGTGAAGTACTCCCGTGGGATGTTCATCTTCCCCGGCGCACAGCCTGCTCCCCACAGG
AGCTTCTCTGAGGAGGTTGATGTCCTGAACCGCTACTTCGGCCACCTGAAGTCTGGTGGC
AATGCCTATGTGATTGGCGACCCAGCGAAGCCTGGCCAGAAGTGGCACATCTACTATGCC
ACTGAGCAACCCGAGCAGCCCATGGTCACCCTGGAGATGTGCATGACTGGGCTTGACAAG
AAGAAGGCCTCTGTCTTCTTCAAGACTTCTGCTGATGGCCACGTCTCCTGTGCCAAGGAG
ATGACCAAGCTCTCTGGTATCTCCAACATCATCCCTGAGATGGAGGTGTGCGACTTCGAC
TTCGAGCCCTGCGGCTACTCCATGAACGCCATCAACGGATCTGCCTTCTCCACCATCCAT
GTGACCCCCGAGGACGGCTTCAGCTACGCGAGCTATGAGGTCCAGGGCATGGACGCCTCC
GCCCTGGTCTACGGCGACATCGTCAAGAGGGTTCTCCGGTGCTTCGGCCCTTCAGAGTTC
TCTGTGGCGGTCACCATCTTCGGTGGCCGCGGCCACGCCGCCACCTGGGGCAAGAAGCTC
GACGCCGAGGCATACGACTGCAACAACATCGTGGAGCAGGAGCTCCCCTGCGGGGGCGTC
CTCATCTACCAGAGCTTTACCGCGAATGAAGAGGTTGCTGTCTCCGCCGGGTCGCCCAGG
TCCGTCTTCCACTGCTTCGAGGGCGAGAATGTGGAGAGCGGCCACCCTCTGGTCAAGGAA
GGCAAGCTTGCCAACCTGCTCGCATGGCGGGCGGAGGAGGATTCTCTGGAGGAGGGCGCG
GTGCTGTGCGAGTGATAAGATGATTTTTGCTGTCGCTGTTCCGTCTGTGGAATTCGTTCT
GACTTCCGTTTGTCGTTTTGGTTACTGTGAAGCAGCCGGCCAGGCTATTGCTACTCTGAA
TAAACTATTAGCTCTAGGTGGTTTGCTGCGTCTGCCACAATGAGCGTACTGTTTGGAGAA
AATCTGTCACAACTTATAAATAAGCATTTTTTTTATCTAAGACGAGCTTGTCCTACTGCA
TTCCTTTCTGCTCAAATCATATTTTAATTCTGTAATTCTTGTTACTACTCCTAATAGATG
CAAGTTTTGCTTAGTCCTGTTATTATCACATCGTACAAGCAGGAGTAAACAAACTGCGCG
TGGGATACATGCACGAATTGATTCTTTTGTTTGACGGGTCCTATTTGATGCTTATCTTCT
GCGTTTCTGATTCGTGCAACCGCTCCAATAATTCAAGACGGCGGTTCGATGCCTGAATAA
TTCATTGAAGGATGGCGGCTCGGTGAGTTGGATGTAGGCAAAGCAGCTGGCGCACTGTTA
CTTGCACGTGGCCTTACTACCTTTCGCCAATCACCTGAGAAACTTTTTACTACCCGCGAA
CGAACTGCCCTTTGGAGAAGGGAAGTGCGTGTGCTTGTGCGCATCCAATCTTGGCGCTAA
AAGTGAAGAGCAACCAAGTTGTTTTACGTATCCAATCTGTTAAGATCCACAAGGATTGAT
GGATGATGGCGTGACCCGAGCCGGAGATATGTGCGAGAGCGACGGCTCCCCGAACGATTT
GTCGGGCACTGATCGTTTGATCACGAAACGATCACGTCGTGTAGCAGACCAACTCCGACC
CAAACCATCAGTGATTTCGTTCGTTTTTTGTTTGTTTGAATTGATCGTCCGTGCATCTGA
CTTAAACGAACGAACGGCGATTTCGTTCGTTTTTTATTTATTTGATCGGCCGCCCGCCCG
ACTTTCACCTAGTACGATCCCGCCAAATCGTTCGGGGACCCATATCTCACGTGATCACGA
CGTGCATAAACGCCTTGACGATTCCATTAGGCTTTGCCGATATGCCGCCATTTCCTTTAC
GCCGACTCTCACCGTTGAAAGCAAATCAATATTTTACAAGCAGCCGTCTCGTTTCTCGCC
GGCCCCTTTCTTGCTTTAAAAAAGTGCACAAAAAAGGCTTGCCATCTTGTAGTATTGAGC
ACCGAGCGGGGAGGGAGGCATCTCCCAATCGCATATGCGGCAGTCTTTTTTTCACCATGC
CAAAGAAAGCTCCCTTTCTTCTCCCCTCATTTTTCTTTGGCAGAAACGTACGCGGCTGAT
GTTTTGTCTCCGCTGCGTGATGTCGCTGTTTTCACCGGGGAATTCGCATCCTGATGATGT
GATCCCACCAGGAGTTGGCCGATGCGTTGCTTGGCCGCCATGATATGCTGCTGCCTCCGT
AATAAGAGAGCCGCGGAATATGTTCCGAGCGCGTCGCCACGCCGTCCAGCCAGCCACTGA
TCCATATCTCCTCCCAACCGCAGAGAGAGGGAGAGAGGGATTCCACAGCCTCCTTGCAAC
CGCATCAAATTCCAAAACGCATTGACCGACGCGGATGGATTTGTTCTGCAGCCACCGCTT
TGTTGCCGACAAACGTGGAGCCTCCTCTCCTCCGTCTAGCCTCCACAAACCCGTCCCGGC
CGGACGCGTGTAGCGTGGATAGATGCATCGAGGTGAACTCCTGTCGCGTACCCCGTCTTC
TCCACATACGTTGGAGTTGGACCGGGAATGAGGGGGGTTGCGTGGCTGGGCCGGGGATCG
AGTGCTCGGCTCACACGGCCCGCCGGTGGCTCGGTTCCTCTCGCGTGTCGACTCGATGAC
ACGGACCGGAAGCAAGTAGTGGCCAGGAACAAAGGCGGGCGGCGGCGTCTGCTAGCCCGG
AAGTTGCCTGCAAGCTTCGCTCCGTGACTCAGTGCGTGGGTGGACGTGGAATCCGAATCT
GCATTATCACGCACCAGCTTCTCGTATGCTACTGTTTTTTTCTAACTCGCTGCTTATATT
CAACTGTTTTGATACGGCGGGGCTTTGGTTTGGCACTGTTTATTTCTATCCGAGGAGGTA
ATTTTCATGCTGCGTTTGGCGGAGGGAATTGCACATACCATCAACTATCGGTGTTGATTT
TGTACAGAGCACCTACCCTACGGGTCGTTGTGCAAAACGTCACATTGTTTTAACCCATTG
CAATTTTCACATTGTTTCACACGTGGCAATGAAAATCGGTCACATCACCCAACAGATCAA
AGTAAGGACTCCCAATCGGCGTATGGATGTGATCCATTTTTATTTTACTCAAAACACGGT
CCATTTATATTTTTACTCAAAAAAATCAACGTTTCCAGAAAAACACGAGAGAAATTCAGT
AAATCACACATGTATCGAGTACTATTCTTGAAAAAGGTAACTTATTTGGACCAATGGCTT
GGTAGGTGTTGACAGTTTTAGTTGTCTCATTCAAATTTTGGTTTTAAATTCAACATTTAA
AAAAATCTAGTTGACCATTAATGTGGCCAGCACTAACCTAGGAATATCTCAACTCATCTG
AACTAGAGGTCTGGAAGATATTGACAACTTCTGTTCGCTCGTTCGAAATCTTACATTTCT
ACAAATGTGCACAAATATTTCACTAAATCCTTCGTGTACTCAGTACTAATCAAGAAAAAT
TGGGCCTGTTTGATTCGTAGGATTGTCAAAATGTAGGAATAGGAAAAACGTAGGAATAGA
GTGGCATGTCCTTTTCTACACTACAGGATTTGAAAGTGTGTTTGATAGCACAGGAAAAAC
AAAGGAATTCTGCAAAGAGGTTTGAATGGATGGAAATTTTCCTTCAAAATGTAGTACAAA
CGAATCCTATGTAAAAATTTCAAAGGATTTCAATCCTACGAATCAAACGACCATCGTAGG
AAAAAATCCTAAGGATCCAAATCCTCCAAAAATCCAATGAAATTTCTTTGTATCAAAGGA
GTCCTTAAGCTTAGTTGAACCTCAAATGTTTGGCAGACATTGATAGTTTTAGTTGGTCGG
CTGTGGTGGCTGTTTTCTTTTGCCCACGGGTGCCCATAAAAGCGGGGCCAATCCTAAAAT
CACATGAACTTGTTCAAACGTTGGATTAGACCGAACCACAATGGATTACAGCTATATGTG
CTGTTATATGTGCAATAAACTTGTAGAGTAAGTGTTTTGTGCAAAATCAGCACCAATAGT
TGGTGGTTCATGCAATTCCCTGGGTGGTTGTACATTGGCCAACCTCAAAGTTTATCGTAA
GTAACCGTTAATCGCGAGGTCGCCAAATCTCTGGTACAAGTGATGTTCCATGATATTTGG
CCTCATGCTAGCCTACTGGTCAACTTTTCTATCCAACATTAAGTAAAGTTGCCATTTTTA
GGTAAACCGTGGCATAGTGTTTTTATTTTTCAGCTTCTCACAAAATTTCGGTTCTATTCA
CTAATTTAAGAAAAACGCTACCCGTCGGTCGATTGATTTTTTTAAAAGATTTGCCGTCTA
GCGAGCCATTGTATTAAATGTGGATGGTTGTCATATTTAACTGCCGGCTTGTAACAAGAA
TAATGTTGCACTTAGATGTTTGCAATAGATTTCATGTTGCAGATTTTTTGTAACACAGGT
ATTGTTGCAAAAGTTGTTTTGCAACAAAGTTAATGTTGCTGAATTATTTTTTACCTTCAC
CTACTACGGAAGAAAGTTTTGCAAAACCATTGATATTATAGAAATCTTTCTAGCAACAGG
AATGCTGTTTCTAATGAGCTCGGCGACTACACGGTCTGCTATAAGGATCGGGTTGCGAAA
ACGCTTCTCAAGCACAAGTCAAGTTGCAAGAAAATGAAGTGGCGGAGGTTGCCTTTCGAT
CGTCTAATCAATAACAGATCCGATGATTATAAAGATGGATGACGCAAACAGATACATCCG
TCGGATGAACTCAAGTATTTCTCTTAATTTAAAAGAAAATCACCTCGTTAATGAACAAAG
ACTCGAGCAAAAATTAGCACATCATGCCAACAAAAGCTAGACACTCTAGAGCACAAAGAC
CCCCACACATCATTGAAGAGAATAATCGTGTCGAGGTTTCCAGCAATGGTCATGTTCGAC
GCCTCTCCCAGCAAATGAGACTAACAGTAACACTACACATAGATAGGTTTACATGGATTT
TACACGCAGGTGAATTTTAATTGGAGATTAAGGAGGATGAGAACCCCATCCCCTCAAAAA
TCAGGAGGGAAAATGTTAGTAAGAAAGAAAGAATCATAACCATACGTAACTCTTTATACG
TTTAGCCTTTTTGCTATATGAGAGACGACCAATGAAGAGGCTTTACCGTGAAAGATGCAT
GAGTCCTTGTTGGCTTATGACAAATAATCGGTCGGAGGCATTGATGAGTAGGCATCCCCT
ACTTCGCGACGAGCCTCACATGCGAAATAAAAATATCTTGCACCGACATCGCTAGATGTG
GTCACTCAATATTGCTAAACACCGAACCTACCTTTGGAGGCTATTGTTGCCAACGAGCCG
CCTCTTGACGTGTAGCTCTGACTTCACCTCTATACCCTATTGAAGAATTCATACGATTAT
AACTTGCCGATTAATTCCTACTCGTATGGTCATCGAGTAGACGATAAACCGATAAATAGC
TTGATTAATTGATTAAATGATTGATTAACTTGTTGATTAGCAATAAATCTCTTACTTGCC
ACCCAATCAAGCATCTACCAGAGCAATGCCTCTATGTAAGAAGAAGACGCAACGACAAAC
CAAGGGACATGACATGCAGGCGACGAAGAAGAATCTGTCATGAACCAACTCCTCATGCCA
CCATCATGGTTGCCCCAGGAGATGTCAACTACTGGCAACACTAGTAGAACGATTTCCCAA
CCGTGGTGTCATGCACATTCAATTGCGAGAAGGTGTTGAAAGGACGTGGATGTCGCCTCC
TAGAGGGGGGGTGAATACGCGCTTTAAAATAATTACGGTTTAG
