Map Locations of contig_55935 (9306 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map locationNo map location




Predicted Genes from contig_55935

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69113 1 558 bp MLOC_69113.1 Available Available None





CDS Structure of MLOC_69113






Contig Sequence (9306 bp)

>contig_55935 9306 assembly3_WGSMorex_rbca.fasta
CTAGGGCATATTTCCAACAACTTTCGCTAGTGCAATCTCTCAACAATGTTAATATAATTG
GATCAAATAACAATCCCCCAACATGCAAAATCACTATAAAGTTCCTATCTAGCGGAGAAC
ATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAAAGTTATTCTTTCTGATCAATC
ATTCCAAAAGATCATACTAAAATAACATCATAACAAATTCAGGTTCATAATAATCAATTC
AACACAAAGAACCTCAAAGAGTGCTCCAAAATTTGGCGTGGGGTGGCCGGCAGCACGCTT
CCGGCTCAGATCTGGTTCCTGTGGGCCTCATCTGGGTCCTAGCGGGCCGGCCACTAGCGC
GGCTTTGACGTGTTCTGTGTAGCAAGGAGGAGGAGAAGCTCGAACAGGAGATGGCGACGT
CGATGACGTGCCTTCTGCAGCGCGGCGGCGGAATTTTGCGGGTATCTGAACGCCCGATCG
GGCTTGGTATGCTCCTCTTATCGCGTCTGGTGGGTTACCATCGTTGACGGTGGAGGTTGG
GCCCTCTCACGTGTTGACGGCGATGTTGGTCCTAGTCCCGGCTCCTCTTCTTCGTTGTGT
AGGGCCCCTTCGCGGTACCGTGGTGAGCATGGTTTTAAATAGCGGATAGCGGGCTGGTAC
CGGATTGGCTTCCGCGTAGCAGAATGCGAATAACGGGCGATATTGCGGGCGCTATGTCCG
CATAGCATTTTTATAAAAATACTAGATTCTTGTTTATATCACTAGAACCTGAAGAAAGAT
TAATGACATTTATTTTGAGTGATAGCAGTCGCTATTGCGCTAGCGCTATTGCATCCGCAA
TAGCGGACACTATCTTCGTTATTTAAAACTATGGTAGTGAGACGGCATTGGAAGCTTCAA
GATCGTGTTGGCGCAAGGTGGTGGGTTTTTTGGTGGTGTGCTCCGGAACGCCCGAGGTGA
AGGTTGGGATCGGGAGAAATCCCTGTCAGCCTAGCCGATCCCGATGTGGTGGCGGCTGTG
GATGGCGTCAGACCTTCCTGAAGGGCGTCTAGGGGCTACCCTTCCTATCTCCTCGCCCTG
TACCGCGGGAAACCCTTGATAGCAGCGTCGTCATCGTCGCATTCATTTTTGGAGCTGTTG
ATTGGTACTGGTGCTTCGGAGTCTAGTTGCTTGGTCGAAGATCACCGGTTGGCACAACGA
TCACAAGGCTTCTCCGTTTTTGTCGATCCATCATTCTCGACATTTGTTTTTTGTCTTTCT
CATTCATTTTTTTAGACGCGCATGATATAAAGCACGAGGATTCGAGTGCCTGGTTTGTTT
AGAAAAAAAAAACGATTGCAAATATCCGAACCAGACGGATCATCCTCACGGTATTAGCCC
AACCCCAATAACGGAGTCGGACATTGTCCCTTTTTCCGTATTTGGTGACATGTTCGCGCT
GTGTCGAGCTACATGTGAGAGTGGCCGAGGAGCTGTGTGACGGAGTGGCCTCGAGCCCCC
GCGCAGCTGCCCAGCCTTGCCTTGCTTTGCGGCGACGTTGCGTCGCCTTGCCTCGCACCG
AAGCGCCGAGAAAAGGAGGAGGGATGGGTCGGGTGGGTCCCTCATATATCGATGACACAT
GGGCCTGGGCAAGGATGCAAAAGTACATAGCATGACGCGAAGGACATGGAATAGGTTTTG
TGGGTGTTTTTCTATTTTCTTCCATTTGATTTATGTTAAAAAAAATTGAATTGTGTGAGC
ATTTCGTAAATGTCAAGAACTTTTTTTAATGGTACAAAATAGGTTTTAATTACGAGATTA
TTTTTATATATTGCAGATTTTTTAAAATTCCATGAATATATTTCTTATACACTTGAACAA
TTTTTCGAAATATCATAATCTTTTTTTGTATTCGTTAAAAATATTTTGTTTCTCAAATTA
CAAGAACTTCTTATATTCTACGAACATTTTATAAAAACGTGACAATGTTTTTTAAAGTGT
GAACATTTTACAAAGGCAATAAATATTTTTCGAATTACAAAAATATATTTTTTACACTAC
GTGAAAGTATTTTATATGCGTGATGAACACACATAAAATCTTTAAGTAAATTAATATTTC
GAACATATATATTTAGAGTATTTAAAATAATAGAAAACAGTAAAAAAAAAACTGACGGAA
CACGCGTAAGTAACAACCCCCACGGTCCTATTGGGGCAGGATAGTGGAGCATGGGTGAGA
CTAGCCTACATTGCTCTCGAGGCGTCGCATTGTCGATGTTTCGCACGGAGTCGAATGGCC
AGCGACCTAACTGGGTAGGCCCAATTAGGAATTCAATTTCCTTGGGTTTTGACACATGGA
GAAACTTCTATAAGGTTCCAGCATCGTCTTCCCCTTTTCCTTTTCAATTTTTTTCTTTAA
TATTTTAATTTTATTTTTTCTTTCCTTTTATTTTTAAGATGGACGGGTTTGTAAAATGTG
TAGGATATTCAAATCTATTTTGAAATTTTATCAAAGCTTCAAAATTTTAAAATATATTCA
GGATTTGAAAAAACTGTTCACATTTTAAAAATGTGTTCCTTGCATTTTATAAAGTTTGGA
ATTTCCAATATTCTAAACATTTGTGTGTCAATATTCAGAAATTTGACATGATGATCATAA
CAATTTTAGAACCAGTGAAATTTTTTAATTTATGATTTTAACAATTTAAAGTGCATCCGT
TTTTAAGAAAACTGGCTAGGAACAGCTCTGTTGTAAAATAATACTGTATTATAGTACCAG
GCCTGGCCTAGATTAGGCATCATGTGCGATTGGGCGGATATATATCTTAAAGAGAGACTA
TTAGTTCGATAGAGCACAGTGCCGCCTCTAGAATTATCTCTGGTTTTTGGAAGCTTTTAC
CTACATCGCATTCCCTAAAAATAATTACAGTGCATACTCATTTTGGAAACCTTCCATTGG
GTTCTCGTTAGGTTCCAACTGTTTTTGTTTCTTTATTTTATGTGTTTCACTGCTGGTTTT
AATCATTTCTATTTTCCTTTTTTGATTAATATTTCCCTCTTCTATTTTATCCCATTTTTC
TATTTTTTATTTTTTCCCAGTTTTCTATTTTTTAAGTACATGTTAATTTTTTTAAGACAT
GTTTCAATATACAGGTTGAACATTGTTTGGATACGCTCTACTTTTTCTCAAATACACGTT
AACCATTTATCCCGATGCATATTGAACATTTGTAAAATGAACATTGAACATTTTTCAAAT
GCATGGCAAACATTTTCCAAAAATTTCATCAACTTCTCTAAAACGCGGAACATGTTTAAG
TGTTATTAACAGTTTTTAAATAAGCGGTCAACATTTCAAATGCACAACGAAGATTTTTAA
AATATACATTTTTAATTCTTTTTATAACATGTGTTGAACATATTTATAATACATGACTAA
TAAAATTCGACATGTTTAACATTTTTCGACACGAAGTGAACAATCTTGAATTACAGCATG
AACCTTTTCTAATACATGACACTCATTTTTTATATACATGATAAACATCTTGTAAAATAT
TATGAACATCTTTGAAATTTCATGAATATTTTTCTGAATGTAAGATTTGTTTTTTTAAAT
ATCATGAACAATATTTTCAACGTGTGAAATTTTTTTGAATAATACAAAAAACATATTGTA
TGAATATTATTTATAAATATCTTGGAAGCTACAAAAATAAATGAAAATCACCGTTGGATA
ACCAAAAAATACAAAGTGGGATGTGGCTCTCCAGAAATCAACGTTGAGAAGACATATTTT
AGTGGTAATTAGTAACCATCCGAAGTGGCATGTGGATTAAACATATCTGAATTTGAAAGT
TGAGGGACTATAGTTTGCTGGTTGGTTTTGGAGTCGAGGGATCATTTATGTACTCTCGAA
AGAGTTGAGGGCCAAAAAATATACTTTTCCCTGTATAATTCCCTGGAAATTGCCTTCGCC
TAAAACCCTTTACACACCAACATGAGGGTTATAATTCCCTAGAGAAAACGCTATGATTAT
CATAAAACCATTTCTCAGAGGAGCATGCTGGTGTCACACGATTATGTACGCTTTGACAGT
AACATTGGAAGATACTTTACATGAATGAAGGGAGGGGGAGAAAAAAAGAAGAAAAGCAAA
TCAACCTCAGATTACAATTGCATCAGTTGATGCTGCCGCTAGTGTACAATTAACAATACA
CAATTGCAATGATGGTGCCCATCATCCTTTTCACAGGGCTACGTTTCCAGAGTCCTTCTA
TCTGTAGCAATATTTGGCCAGACGAACAACCGTGCTGCGACGCACGACCAAATAATCTGC
CCATACGGGTCATCTGGCTGCCATTGCCAAGCCAAGGAATGGCACGAGAGAAAGTGACTA
CAGGTGATGTCATGTGTTTTCCTATGATCCACTCTCAATTTCGTTGCTGAACGGTAACCG
ATCGACGCCCCTCTCGACTGCATCCCTCCATAACCGATACCGGATGCCGAGCTTGTCATA
CGACACTGGCCAGTTCCAAACGTTAGCTCCATTGTTCATTCGGTCTTGTTGGCCGAGCAC
AAGCCGCAGATCCTCATTCAAGACCTGCAGAAGATCATGCAAGATTGCCATTGTCAGAAT
AGTTAGACACAATTGTTGGAACCAATTCAAGTTCTGTCTGACTTAGTATGCAAATGACAG
TTAATAATTACCAATTTTTTAGCTGTCATGTTGACATGCTATAGTTATGAAGAACTAAAA
CCACGACAATAATTATGGAACGGAGGGAGTAGCCACAAAATTTGGGACTTGCCTTCTCAG
CGAAATGTGACCACAAGAGGTGCATGAAAGGCATGTGCTTCATCCAGGGTGCGAAGTCGA
GAGACATCCGGTACAAGAGCCTGGTTTTATTCGTCGATGAAGGCAAGCATACATGGAGCT
GGTGGAGATGCGTTGCACATTGCTGTGTGCTCTTCCCTTCTAGCTTTCCAGGCTTGGAGA
TGCCAATGGTTGACAAGACCATGCAGGGTGGTCGGAACTCCATATCGATAGGATAAGGAT
CCCAGTACCCTTGGAGCCCAGATGTAGGTGTCAAGAACTTCACAAAGCTGAGAATAATAA
CACAAGATCAATATGTTGATTCACACAGACATAATATCACCAGTTTATTCATCAGCTAGC
TCTACACCAAATTATAATGTTTACAGAAACTGTTCATTCATCAGCCAGTTCTGGTTACTT
GGTGCCATCAGATGTATAGAAATACCTTGGAACACTCCAGCCCTTGGCAAAGGTGGATGT
ATGAGTAAAAGGGGCATGAGCAAGGTCTAGTAGATTGTCCAAAAGAAGTCCATGTTCCAC
TGGTAGCTCCATCACTATCTGTTCAATGATCAACAAGAAAACGCTCATACTCAGTCCAGC
CCAGAACTAAAATATACAGCACACCTGCACAATAGCACAACTGCTGCAGCATCATAATGT
TCTTTACCTCTGCATGGATTGTAAACCCTGAAGGGGGCAGAAGAGAAGGGATGGTGGGTG
TGGGCGTGTCATCGCCGGGCCAGATCCAGACCATTCCTTCTTGCTCGAAGCACGGCAATG
CCCGGATGCGCACGTTGAGCATCTTCGTTGATGGCATTTTCTCGCATTTTCCATCAGTCG
AATACTCCCACCCTGAAGATTGTTCATAGAAAATAAAATATTACTTGACATCATCATTTA
CATATCACAACACTGATGAGCATAAGAAACCTGACTGAACAATAAATTGCTCTGAGTTCT
TACCATGGTAAGGGCAAGTGATTCTGCCCTCATTCACTGAACCAAGATCAAGAGGGCAGG
CTCTGTGAGCACATGTATTCTGGACACATCCAGGCCTTTTATCTTTTCCGCGGAATATTA
CCCACTGTTCCTCGAAACAATCTATGGGCACCTGAGAGCACACACATGAACTTGTCAAAT
AAACACATCTATCTATGACCACAAACTACCGATTAGCTTTGAGACAGGCATATTGCTTTA
CCATTGTGTCATCCTTGAGGTCACCGGAGAAAGCCACCGGGTACCAGAAGTTCTTCAGAT
TGGCACTGTAAGGCTTGACAGGGCCAGAAATGTTGAGACTGCGACGCTTCGGTTTTTTAG
CCCCGACTCGGACCGTGGAGGAAGTGCTCGTAGTTGTATCAAGAGAAGTACTCGGATCAA
GAGAAGCGCAATCGGCTGTGTTTGCGAAAGCGCTGCCATCCGACAACAGCCTTTCATTGA
CCACCGTCTCCATCTGTGCTAGCTTATCGAGGGCCGACGACACTCTGGATTCCGATAAAT
AAAGCTGTATGACATACGGTCAAAAGTCAGGTTCCACACAACATCGCAAGTTCTTTTATC
TGGATTCTCCCAACAACAAACATACCTGGTTGTGAGCCTTTGCAAGTTCCTCCTGAAGCC
CGTCGAGGTCTTTCCTCAGGGTCCCGACCGACTTGAAGTCCCTTGCTAAAGGATTAAGAA
CCTCCACCACCTGCATTTCATTTTGCACAATCAAAGTTATATGTAGTCCCCAACAACTTG
TTATCTCATCAACAATTTCAACATCAAGGATCTATGTAATATCCATTGGATCATTGATTT
ATGCCTTACTCTGACCAGTAGCACTCATTCTGAAATTCAGTAAGTGCAGACTGAAACATT
TCTCTGAACTTACTACTGCATGCTATCTACCATTATACTTATACCAGTTAATTTGAACAT
CAAGCATCTACTATCTAACACCCATCCGATCATTTACAACTTACTATGATCAGTACCAAC
CATGCTGAAATTCAGCAAATTCAGACAGAAACATTTCTTTAGGTAACGTTTTCTAAACTT
ACTGCAAGTGCTAGCTACCATTATTCAGGCCTGAGACCATAGTTTTGTATACCTTGTTAT
GGAGCACCATGATGGTGAGCAGGTCCTGCCGGGCCCTCCAGTCGCAGTACTGGATGTCGA
AGCGGACGACATCGAGCGCCTGCTTGGCTTCCAGGTACTGGCCCTTCTCGATCGGAACCC
TGGGGCCGGGGTCGTCGACATGGAACAGGGCCTCCCAGTGGTGGTTATCCTTCAGGTAGT
CGGCACTATCATCCCTGAGCACCGCGTACACCTTGATTCCACCATACCTGCCAACCCCCT
GCACCACAGTTTCAAGCAACAAACATCATCGTCAGCTACTAAGTTCATCATGGTAGGCAG
AGAACTGGGTAATTTGGGGATACACTAGAAATTCAGAAACATCGACGCCCACACAACAGG
ATGACGAACGATTGGTGCAGCAGAGCTCGAGGACTGCAAAAATCGGCATTGTTGGTGGGG
AGAACTGACCTTTCTGGAGAGGCAGCGGAAGGAGGGCTTGATGAGCAGGTGCGGCACCAG
GGAGAGCGAGGCGACTGTGGTCATGGACGCTACGCTGGCTGCCGCCGGCCGCCGTCGAGC
AGCGGGAAAAGAGGGATCTTTTCGGGGCCGGGGAAATTCCTATATCTCTGTTTCTCGGAG
AAGGAGGAAGATGGATGTGAGCGTGGAATATTTTGGCCGGAAATCGGTCGAATTTTCGCG
GCTGAAGTGTGCCTGACGCCTCGCGACGATAAGGGGAGGGGGCTGCCCGCGATCTCCACG
GGCCTCCCGCGTGTTGCCACGTGGGAACCCGTGTCCGGGGTCTGGCCATGATGTGGAGGC
CTCCGTCACCACGCAGACTTTTGGACCCAATGTTTCTTGCTGACACGGGACGGGAAATTA
TCAGGCAAGCACTTGCGCTTTCGAAGAATGTGTTGTGTAGGAGCATCTGAGTAATATGAC
CGCGGACGTTGATCGATCACGTTTTAAAAAAATACAATTTTCATCCGGACACCTGAGTAA
TATGTAATCTGGCTTTTAGAATATGGGATAAGAAATTATCAACGAATGGAGTAATATGTA
ATCTGACTTAATAATGTGGTAACCAAATTTAGGGTTGAGTTCTTTTGTTGGTTTTTAGAG
TAAGCTGAAATAAGTTACCCACTACCCGGTTTATTTTAGAAACTGAACCAAATTTATTTA
TTTAAAAGCCCATTAATGAAGACTTGACTAATAGTCTTTTATAAAACGTCTCGATTGGGC
TTTTAGAAAAAAGCCACCAAAAGAAATGGGCCTTAATAAGGGTAACGTATTGAGGAAAAG
AAAGAAAAATTGTGCTTGCCCATTGAAGGGCAATGCCATAAAGATCATAACGGTAAACCT
GTAGGATAACTGGTTTGGTGCCAACATTTGGCATTGCCAATACTTGGAAGTCAACAATTG
GCAATATCAAAGGTTACCAAAAATTGGCAACTTCTTGTGAGGTTGGCAAGTAAACATGGT
AACCAAGCAACCGGTGTCAAATATTTGGCATTTGCCAAATGTTGGCATGCCATTTTTTGG
CATCAAACATAGTGTACTCCCTTTTGATGGGTGCATACGACATGGGCGTGTTCCTACATT
GAGTAATGAATACATATTATATGTGAATTTTTTAATTTATATGTGCGGAAACATAATTCA
AATACGAATGCAATGATATGCTTTTTGATGATATATAGAACATATACTTTATTAGTCATA
GTCAAATTAAGGACCTAAAAACCCACACCATCACTATAAACCTGAACGGGGAGGTACTAG
GTACCGTTGGGAGTAGGGCCTTGACACTTGGCGTACATGCCCTTACCTCAGTTACATTAA
CATAAGGAATACCATTTTCTCTCTAGATTAACATCATATTACTGGAGTCCTAGTATCGTG
GAGCCAATACGTGGCATGACTAAAACCGCGAACGCCATCATTTGTTTTACAATTTCTCTT
AATATAGTTGATTGTCGCATTTGATGAATAGGTTCCTTGTGGTTTTGTGGAAAGAACGAT
AATGGTTACTCAATCCATCATGATGGAAAGAACGATAATGGTTACTCAATCCATCATGAT
GGGAGAATCCCGCTGCCCAAGATCAGACATCCCACCCGCCAGTTTGGGAATGTTGCATGG
GGAAAAAAATCCCTACGCACATACAAGATCTATCTATGGTGATGAGCATCTATGAGAGGA
GAGATCGGATCTACATACCCTTGTAGATCGCGAACCGGGAAGCGCGAAGAAACACGATTG
ATGTAGTCGAACGCCTTCGTGATTCGAATTGCAAGCCATCCCGCAATCCAAACACGATCT
AGTGCTGAACCGACGGCACCTCCGCNNNNNNNNCACGTACAACTTGATGATGATCTCCAC
CTCCTTGATCCAGCAAGCGAGGGCGTAGATGTAGATGAGTTATCCGGCAGCACAACGGCG
TGGTGG