| Morex x Barke POPSEQ 2013 | Oregon Wolfe POPSEQ 2013 | Morex Genome Release 2012 |
|---|
 |
 |
No map location |
Predicted Genes from contig_55825
| Gene ID | # CDS Predicted | Max CDS Length | Probes in Cluster | FPKM by Treatment | FPKM by Replicate | Top Rice Hit |
|---|
| MLOC_69114 |
3 |
2379 bp |
MLOC_69114.2 |
Available |
Available |
LOC_Os10g41780.1, FRAME:-3, EVALUE:0.0, 13110.m03906 protein chlorophyllide a oxygenase, chloroplast precursor, putative, expressed |
| MLOC_69043 |
1 |
1442 bp |
MLOC_69043.1 |
Available |
Available |
LOC_Os05g43930.1, FRAME:-2, EVALUE:2e-163, 13105.m04633 protein O-methyltransferase, putative, expressed |
CDS Structure of MLOC_69114
CDS Structure of MLOC_69043
Contig Sequence (6666 bp)
>contig_55825 6666 assembly3_WGSMorex_rbca.fasta
AGCGACGACCAGAACAACACAACGACGTGGCTGGCGCAGATCGTCGCTACACGTGCTGGG
ACGGCATAGCGACGACCAGAACAACACAACGACGGGGCTGGCGCAGATAGTTGCTACCAT
AAAAAACACATATGATACGTACAATCATGACCATAAAATCAATACGAACATATTTCATGG
AATACCAAACAAATTATCTTTCAAAGTATATTGTATCATTACAATTCATATAAGTGTCGA
ACACTTCAGGGAAACCTTCTACGCGACAAAAACCCTCCGTGTTCTACAACTTAATCTCGC
GAAATAAGTCTCAATACTTTGTGCTTCACTTTCTCAACAATGTTGTCCTCTGAAAATATA
AGTTCAACAAGAATTTTACTCCTTGATTCATTAATTTCGTCCTGGTCAAATGTAGATGTC
CACTTTTCTTCATCCCAATATTCGATACATCTCAGAACGAACAACCCGCAAGAAACTCTA
AGAAAAAGCGTTATGTTAGGTAATGATTGAATTAAGCTTGTTACAATATTCGATAGCATT
TATGACTTACCCATCAGTTTGTTTTGGCATTTCATACTCCACAATGAGCTATGTAGAGAC
ATCAGGAAATTTACTTTCAACTTGTTTATTGGCAACCGCAATATCTATAGCAATTTGCGC
TTTCTGATAAAAATAAATTTAACGTTATCATCATACATATTGCAAGACGCGGTACAAAGT
ATGTAACGAAGAAAAGAAAACTTACCAGAATGTGAATGGTTTTACGAATATTTCTGTCAA
TTGAACCAAGTGAATTAAGAACTTGAAACTCTTTCTTAGTGTTGTGCATGAGAACAGTTA
TCCAATGATTACCATTCACGTTCATAGGAAAATAAGCTTACGAAAAAAAATTTAACTTTG
TAAATAAAATGTTAACTTTATTAAGAAAACAATACCTTGTCCGTGTTGAAATACTCGTCC
ATGACTCTAGTAATAGTTGTTGTTCTTTTTACCAAAATCTCCATCTTCATCTTCCTGCCT
GTCACGCGACCAGCTGCTCGGTCTACATATCTACATAAAAGTCGAAGAGGAAGTAATTCA
TATCTACATTCTATAGACAGATCGAATAAGAAATACGTAACTTGTGTCGACGAAACCGAG
CATGTTGACTGCCTTGAGAAACCACTCGATTGGGGTGACTGCTTCGAATATCATACCCAA
TTTATACCTTGCACATTCAGCACCGAACCTCACCAACCTTGAATCGCCCGGCTAAACATA
TTGTTGGGTCATAGCACACACGTTCGCATGTCACCATTCCCATCCGCGCTCAACACCATC
ATCTCGACTTCCATTCTAAGCTCGCTAACCACACTCCTGAATTGCAACCAGATCCAAAAG
TTGAATCACGATTACTCCACTACCAAGAAAAAAAAACCCCAAAGCCAGAGGAGAAGTGGG
AAGCGGACGGCAACAGATCACAACGAGGAGAGTGCAACGTCGGGATTCCATAGCACACAT
CTTGTCAGGGTACATGACCAGTCCTTGTCGTCATCGACCACTTCGAGACCGATGGTGGTG
ACCGCGTCGGAGGCTCGCGACAAATATGGAACTACAAAGGCCAAAATTGGGAAGAGGATG
GAGCGGTTAGAGGTGACGAGGAAGGACGGGGGCAGCAGTGGCGGTGCCTGGTGAACCAAG
GAAGAGGAGAGAAGGCGGCGGCGGCGGCAAAGAAGGAAGGGAGTCATGGGGGAGACCCGG
GTTATGTTAGAATTTGTTCTACTACTCCGGCCAATCCTGCGTGTGTGAGCGAGACTTGAC
CAATCCCTCCTCGCGTTCATTTTGTCCTTTCCTATCCAATGTACTACCCTCCTTCGGGTT
TATAGCGTATGTATGTTCTTAGGTTTCTGATTTGACCAACATAGAAGTTGTATGACACAA
AAATATACATTTCGCAACTCATTCAGATAAGAATTTGATTATATGCTTGTCGTGGAATAC
AACTCATAGTTTTGAATTTGATTATACGCTTGTCGTGAGATACAACTCATATTTTTTAGT
CAAATAGAGGACATAAGAACACAAACCCGCCCTACAAACAAGGAACATGGAGTAATTTAG
GGCTTCCATACATGAATTTAACAGGTACATGAAAGATGTAACCATACATCAGACCCGATA
CTTGGGTCGAATCAACCAAACCCTTGTTCGGTTTCCATAAACATCCATGTCTGCACACAT
ACTCACAAAACCACTTTCACGGGTAGACCTCGATGATTGACCTGAAACCTAGAACTGGTA
TTATCTTGTAGCCACTAAACCCAGCTTCAAGAAAGATCTTCTCCCACTCTTGCTCATCTC
GCTCGATGCCATCGACAATCATGATGTAGAGATCAAACATCGACTGTAGCTCTTGATGAT
TTACGTGTGATGGTCCGGCTCCGATGACTATGTCGATGATTATTACCTTCCCTCCTTTCT
CTCGCGGAGGAATAGATTTCTTGCAGTTCTTTAGTATTTTGACACAATCCTCGTGGCCCC
AGTCATGTAGTACCCACTGAAAAAGGACTTACATTAAGAGCTAGTAGAAAACTAATACTC
CCTCGAATCCAAAATAAATGTCGCGGTTTTGATGGAGTACTACTTATTGGTTTACTGGCC
ATTTAGAAAATAGTTACATGGTCCGCTTTTTCTTTTTACAGTCCGCTTGATGAGTTATAT
ATGATCCATTCCGTTCTAAACATGGAGGCCATCTTCAAGATGCAATTTTGGATATTTATT
TATCTAATAAGTATGTTGGCAATTTTCCAAAAGAGCTATACATTCATTGTTATTTTGAAT
TAAAGTTCTTTGAATTTAATGGTAAGACTAGCTATATCGCTATCTCTTGTATTCAAGGCT
TAACTTACGTAGTTACGTCTGTATCAACCTTACAATTATCAGGGTAGTTTGTCTTGTCTC
TGTACTTTTAACTTCAGAGCTACTCCCTCCGTTCCTAAATTTATGTCTTTTTAAAATTTT
TATTAAAAAACTACACATGGATGTATATAGACATACATTATTGTATATATTCATTCATTT
TACTTTGTATGTAGTCACTTAGTGAAATCTCCAAAAAGACTTATATTTACAAATGGAGGG
AGTAGATCCATCAAACTCCTGTAGCTTTAGCTCCCACGCTGGTGCGATCGACTAGGACGT
TCGTTCAGCGTTACGGCTACCTAACAGGAGCCTTGACGAAGAAAATTGTAGAAGTACGTA
CCTTGAGGAAGACGGCGTCTGCCGGTGGAATACTCTCGAACATGTCGCCGGCGACGTACT
TGACGTCCGTTCCAGCCGGTGCCTTGGCGACGACGTGGCCGAGGTCCATGACGGTGCATT
CCAGACGCGGGAAAGCCTTGGAGATGGCCTGAGCTGCCGCGCCGAGGCCGCCCCCGACGT
CCATCAGGGAGCTTATCCCCTGGAAGACCTCGCCGCACTCCCTGATGGCGATGTCCATGA
TGAAGCAGCTGTCCGAGACCATGGCGTCGTTGATGAGCGCGTCGAAGGTGGCGTCGTGGT
CGGCCATCTTCCACAGGGCCTCGCCGTGCGTCTGCGTGAAGATGCACGGGTCCGGCAGCG
AGTGCTCGAACCACGCGCCGATCCCAAGGAAGGGGGTGACGAAGTTGGGGCTGAGGAGCA
TGGTGATGATCGAGGCCAGGTTCCGTGAGCCAACGAGCAGGCGAGACACCGGGGTGAGGG
CGTACAAGGGCTCGGCGCCGCCGCCGTTGCAGGTGCCGTTGTTCAAGGAGGTAGCAGGGT
AGACGACGTCCTGCTGCTGGACGACGCTGAAAACGCCCGAGACGGTGAGCGTGCGCATGA
GGCGGCGCAGGCAGGGGATCTTGGAGGGGTGCACCGTGGCCCTGGCGACTATCTGGGGGA
GGGTGGCGGCGCCGCCGTGGTGGTGGATGGCATCGGCGAGGCGGAGGTCCAGGGCGGACT
TGAGCGCCATGGACTTGATGTAGGAGAATGTGGTTCTCCAGAGCTCGTGCTCGGCCTCGA
GCAGGGCCTGGTCGCATGTGCTCTTGACGGTGAGTGCCATGGTGCAGTAGTGCAGTGTGC
TTGTACTTCCCTACGTTTGGCTTGGTGGTACATGGAGAATCAAATCGTTGCTTCTTTATA
TAGAGATCGACGTCGTGCCGCTCGTGGTACACAAAGATACAGTATAAAAATAAGCGTCCG
ACGTTTGTAAGAACTGACGCAGCATCTGAGGTAGGAAAATCCCTCTGTGCATAATGTGAT
ACATGCGAAACGCAAGAGTAGCTACCTCGAAGTTCGAACTAACAAATATTCTTCCAAGAG
CAGGACGAGCTGGTACCGGTGTCCTTTTTTTTTTTTTGGGAAAATTTTACAGGAAAATCA
GTGCAAGCTTCAATTATTTGGTCCTAAATTTCTCGGATGAGGCGTTTTTTTTTTCCAATA
AAGGATGAGTTTATTGGCTCAAATGAGGTATTAAGGGGATACAAATACAACTAGGACATT
TTTGTTGTCTTTGCTCAACTAGAATGAGGCACACGAGTAAATTGCAAAAAACGACCATAA
TTGGATCAAAATTATTAATTGTTCAGGAAAAAAACCAGCAGAAAACATGCATTTTGGTGG
GTGTTTGATGACTTTTGCACAATTATGATGGTTTTTTGTAATTTACTCTAAGACACACAC
ACACACACACAATACGTTGGCAAAGAGCAAAGTCTCACATGGCCGAACCTATTCCTAGCC
TCCTAAGCTGAGTGGAATAAAAAAAACTCCTAAGCATTCAAAAGAACAAGGCGCGAGGAC
GCCGACGACGTTGAGCCAGGAGTGGCATAGAGTTGGGGACGACACGACAACAACGCCATA
CGTAGAGGTGAGTTAGAGGTTAACGGTTTCAGATACATGGGAGTGGTGGGGAGGTCATCG
AGGATGGAACTTGACGAGTTTAGGTGGTGGCCTGAGGCAGCGACAACATGATGCAGGAGG
TGCCTCGGGCAGGGCAAGGCAGGCCCCGCTGGTCGTGTGGGAGCGGGAGCGAGCAATTAT
GCTTGGGCGACCTGAGAGTAGAGGAGAAAAAAGATGAACAATTTGGAATGGCTGGAGCAG
AGGAGAAAGAAGAAAGTAGGACAACCATTAGATTTCAATCCGACAGCTCTGACAAAAACA
ACATAAACCAAATGTGTTTTCAGTCACCTGATGACAAATAGGTGGTCCCTTAGGGCAGCC
CGAGTGGGCAATTTTGACCCCTCTAACACAACCGATGAGTGTTTGAATGTGTTCGTTTTG
AGTCCCTATTTGCTTGTGCATGCAACCATATCCTTCACATCTTTACCTATACACCAGTCA
CATGTATGTGATTGATGAGGATGGTGGTAGAAAAAAAAGAAAAAAGAAAAAAAAACTGAC
CTGACATGTCTAGCACCTCTCATATTGCCTCCATATATGGGTTGGGTATGAGGAGTGCCG
AACAATCGAGAGGCCTTCAAGGCTTTGGTTGGGTCAAAAAAAATTCTTTCTCTTGTTTTG
TCCATGGGCTTGTATTCGTCAGGTCAATTTGAGGAGTCAGGTTGTAAATGCTCCTACTCC
GAAGTTGCACCCGATATTTTTTTTGCAGGTATGACACCAATCTCTTCAAATGAAAGGTAT
TAATACAAGCCAACTTGCTATTTCCAGGACATACCCACCCACCTCTATGCTCCACTAGCT
TCCTCAAGATAGCTATTTTTTTTCTCTCCTCTTTTTCTTTCCGGGTAAGATAGCTACGTT
AGTATTCTCCACTCTCTAGCTACTCGAAATAAACATGCTCCTTTCTTAATGTAGATCTGG
TAAACTGGTCGACAAGTTAAAAGTAATTAGATACACCCATATGCATGCTGCCTTTTTACA
AGTACATGTTAGCTAGCTGCTCCGAATTAAAGCAGATAAACTAAAAACCTCACTATACTC
GTGCTGCGTTAAATATATGTTCTAGCTCATCTGTCACCTGATTTTCTCCCTGCTACTTTA
TCCACATTCATTGGCTGCCAACTTGCTGTATGCAGATGGTCAATTAACCGGTCGACGGTC
GGACTGTCTACTGGCTGCTTTACGTAGATGACCTTTCGCTCCACTGATTCGTCACAGTAC
GAGTAGCAGAGCAGAGTAAGTAGCATAAAATTACTATAAGTCGGGCTATGGTTTTAAAAA
ACTACCGGTTTTTAATTTTTGATCGATAAGTATCAACTCAGGGATCGGCTGTTTCAAAAA
ATCTCAAATTCCCGTTGTTTCAAAATTAAACCTGTTTATGAGAGGTCGGGCCCACACCTA
AACAACCCGTCCATTTAATCGCCTTTTTGACCGTTAACTGGCATGTGGGACCCACATATC
AAGGTCTAAAAAAGCAATCAGGTCGCTGAAAGTTTTTTGAAAAAGCAATCGTGTCCCTGT
GAGTTTTTAATCAGGTCCCCGCAATACTTTTGCAAAAAAGCAACCATGTCCAAAGATGCA
GAGGAGGTGCACTCGCTGTAGCTAGTACCTCGATCCCTAGCACTCTGCCCGGAGCCGCGA
CGTCGCCTTCTCTGGGCCGCGAGCCACGCTCGCAACGACCGGATCAACACCATGCATCGC
CTGCGGCCGGCGAGCCGTGCCCGCAGCGGCCAGATCCACGTCGTTCGTCGTCTCCGCCGA
CCTCCA
