Map Locations of contig_55757 (7888 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012




Predicted Genes from contig_55757

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_69016 3 1761 bp AK370127 Available Available None





CDS Structure of MLOC_69016






Contig Sequence (7888 bp)

>contig_55757 7888 assembly3_WGSMorex_rbca.fasta
GTTTTTTCTCCCAACCCTCACTTCTAGAGGTTGGGAAACAGTTTGAGGGTTGGACCTCTA
AATTTTTTTACGGGTTCGAGGGTTTAGATGTTCTAGTCTATGGTTTTTTTCGATGAAAAC
TGTAAAAAAAACAGTTAATTTTAAGGGTTTAAGGGCTCTACTAGACTTGCTCTAATAGCA
TTAACCTGCACATCTCTCTCAACATGCAACATGGCCTATATCTCATGCACTAAGCCTGCA
CCTGAAGACCGATTTTTAGCTGTTTGCTCATTACCCTGTATCAGTGAGTAGTTAATATAA
GAGCTGTGAAAATATCCATTTATCCTGTAATATATAATATGCACCCTGGTGCGTATTCTA
GAAAATATTAATCAATAGTAAATCATGTGGCTACCATCATCGACTTAGGGATGGAGACAA
ATCAAAATCTGGGAAATTGACTTAATAAGGGTATAGACACACCCTTTATTTTTTAAACAA
GTGGCGCAGGTCATCTAATTAAGCCGACTTTCTCAAACAAACAAAAACTGATTTGGAGTG
AGCAGATGAGTGTTCCTTGATGTTTTTTTCTTCTATAATAGAAGACTATTTCAGTGAGTG
CTTGGGAGCAAATGTACTTTCTCGATATTTCTATTGGTGCCAATTAAAGTGCATAACCGA
TGTGATCTACTGACTGACCAAGAAGTGGGCACTGGTTAATGATGATAGTGAAGATAATGA
AGTTAACCAAACAACCATGCATGCATTGCATGCAATTAATCCATGTACACCTCCGACACC
ATCAAGTTGAATGGCCTGATGTACCATGGATGGATGGATGGATGGATGGACGATGGGAGG
ATGGAGGCCACAACTTTAGATTTTGCTTTACGTGGTGGTGCCTCCAACTACCCAAATTTG
GCACATGAAAGAAATGGGATGAAATCAAACTCCACATGCCTATAGCTTGTACTCAGCTAG
CACCAGCACTTGGGATTTAGTAGGTGATAATGGTACAATGCTGGACTTCACCTGAAAGAA
ATGGGGTGAAATTCGACATGACTAGTGTAGCATGTACCGAGCTAGCACCAGCACTTTGGA
TTAGTGGATGATAAGTCATAAGGCCGACCTTCGTGCTTCGGGCCAAATGCAAATTAATCC
CCCACAAAACAAAGAAAATATAGGGTAATATAAAATGCATCGGAAGCTATTGATTGCAAT
TTTTTGTTGATAGCTTACCAAGCTGATCGCTTGGTGCATCGGAAGCTATTGAACTTTGTG
AGACGGTGAAAATCGGTCCTTGGTCTCTAAAAATTTGCACTCGAGGTCCGAATTTCTTAA
AGGGCCCACCTATGGCCTGAACAAAAAAATTTGGGTGACGTGGTCACTTATCCAATGTGC
AAGTCGATCCAACATTTATTTTTTTTCCTTTCTGCAATTTCCTCCTCCCATGCATTCAAC
TTTTGATTCACAACCATGTCTTTATATTATTTGTGGTCAAAGTGAGGCCCTGGCCTCAAA
TACCTATTTGTTCCCCACCCCAAATCCCACCTTAGTTGAACCCGATGATACTCGGCCTCT
CCACCAATTGTCCTCCCTGCTGCTGCATGGTCCTCCCCTCTGCCACTCGTCAACCCTTCC
ATGTGCGCAACTCATCATATCAAGCGGAACGAAGGAGACCGGAAGCGTCAACATACCGCA
TACCTAGGATGGTTGCGAAGGAGGTGTTTCTCATTAGCCGTTTGTACGTGAGGTCCATGG
CCACCGTTGCTGATAAGATCTACTCCCTCCGTTTCATAATATAAGTTTTTTTAAAGATTT
CACTAGAGGACTACATACNNNNNNNNNNAGACATACTTTAGAGTGTACATTCACTCATTT
TGCTTCGTATGTAGTCCTTTATTAAAATCGCTTAAAAGACTTATATTTAGGAATGGAGGG
AGTACATATCTATTGATAAAAAAGGTAACATCGAACCGCTATTGCACCTACCAGCGCTCT
CGGACTTGTTGCACATAACGATACATTGGTCGACGCACTATTTTTCAAAATCAGTTTCAG
GAAAATTTCAGCATCGATCGAAATCACAAAATTCAATGAATTTCTGTGGTTTTGAATTGC
ATTTTGGCCAAATGGCCAAAATATTCATTTGAATTCAGTTAATTACTTGTATTTTTGAAG
AGTATTTTGGAAAACATTTGAATTCCTGTGTACTACCGAAATCGCTTAAATATTCTGTCG
AAAGGTAAATATTACAGTGTCTACCGAATTCAATGAATTTCATTGAAATCTCACTAAAAG
TGAAAATCACGTGGGCATACAGTCCATCCACCAAGATTCAAATCCTATAGGATGCTGGTG
AATGCACGAAAAAAAAAGACATTGTTTACATAGCAAAACGCCAAAATAAAAGAGGACGGA
TTGACCCGAGGCATTGCGAGAGCAAGGCATAGTACATATCAGTAGGTGGGGTGTTGCAAT
CCAGCCAAAGATATTGCATGCGTTGCTGCACCCACGTCCATCATGACATGAACTCGCATC
ACCTTTCGAACATGCGCTGGAACTACTGTCACTGTGGCTTGGATCCGCGTTTGACCATTG
ATCATCAGATAGCGCAGTGACAAATACCGTGAGTGGTCGTCACCAACTAAATCTTTCCCT
AGATAAGGAGGTGGATGAAGGTCCATGTGTCGACCGCTCTTTAGCTCCCTGTGGAACATG
CGTCGGAGATCGAACGAACGAGGATGGCCACATGATCCGAAGGCTTGTCGCAATCCCACG
ATGCTCGGACGAGGATCGCACTTGCTGTACTTTGTAATACTCCTAGTTAGTAAAATACTA
TGCTTAGTACATGCTTATCTTCAAACTAATCCGTGGTAGGTCATGTCCAGTGCTACAGCT
TCAGGTAGGCCTAGACCCCTCAAGTCAAATCGATGACCCTGCTGGTGGATTTGGATTGAC
AATAATCAAACGTGCTCAAGATATATACGATGTATGATGGGGTGGACGATGCGGCGCCAC
TCACTCGCAATGCAGGGCGGGAACAGCTGGTGCCCAAATCTGAATTCCACTCGGCCCATC
GATCATGATCATGCATCCATATGACAAAATCATGCTTGTTTTTCTTCTTTTGTATATAGA
AAGGATATGGAAACCATGTGTTTTGCACCAGAAAAGAGAGAGAAAAAATCGATGTCTGGA
TAAGCCAGAAGCAGAGAACGTTGTCCAGTGCTGCTATCACCTTTGTCATAGGTACTGATT
AAGTTGATGAGTTTGGTGCAAACATAGTATGCTTTTTGTTGTAGAATAAAACACATTGCT
TAATTTGTAGTGCAGCTTTGGGTGGTAGATAGATCTTCTGATGCTGGATGCAGAAGATTT
ATTCTAATTTACTTAAATTGTGCGTGTTCTTTTTCTTCTCTAGATATACTCACAATGTGC
TTTTGCACCCCAAAAAAGATGAAAAATCGATGTCTAGATCAGCCAGAAGCAAAGAACCTT
CTCCAGTGCTGCTGCCACCTTTGTCATCCTAATTAAGTTAATGAGTTTTGCGCAATATAT
ATGTTTTCATGTTGTTGTCCAACCAAACACATTTACTTACTTAATTGTAAGTGCAGCTTT
GGGTGGTAGGTAGGCCAACAAATGTCTGGACTAGATATAGTCTGGATCTTCTGATGATGG
AGGCAGAAGATTAATTAGTGCTTATTGCATCTGGATGTGTAAATAAGTAGTATATTGAAG
GAATCGGTTCCTTGTGTCTTATGTTGTGTGGCATGAGGTGTGGCTGTCGGTAGCAGGGAA
TTTCCAGCCACAACTCCATGATGGGGCACAGAATGATTAGCTCCAGTTTCATTCAGTAAT
AACATCTCGGTCAACCGCATGGCCTGCAAATCAATCCTTTTTTAACCTGCATCTAGCTAG
AGTGGAATTTCAACACTTGCTAGTACTCAATTACCCTAACTGGTCTACTAGTTTGCAGAC
CAAATTAGCCACAAGTTTTTTATGCAGCCAGGTTCAGCTCTGATTAGGACAGGCATATAG
ATTGTGGGATGAACCTTCTTTTCCATGATAGGCAAGGTACAATTGATGGGAATATTTAAC
ATTCATCGACATCCAATTCATATACTACACTCATAGTTGCCATCCATCCATGATAGGGGA
GGAAGAGCACATATATATCATTTTGGGTATCTCACACTGAATTTGTTCCCCAAAGTGCGC
ATGCCATCATCAGGTCGCAGGGGTAATCTTCACCTTTGATTAATACTCCAGTTGTAGTTA
TCTTGTTAATTCCTAGTTTACTGGGTGCAGAAGAGAATAAACCCCTTCTTTCTTCTCTCT
TTATTTTCTTGTACTTGCATAAACCCCTTTTGACCATGGAGCTGAACCATGGCAGGCATC
CACTCTGTACTTGCTTAGCCACAGAATGCAGGACACTGGGCATCAGGATAAAGGAGATAT
GACATAAAACATACAAAATCTGAATTGAACCCTACCATCGGGCGAGTTGGAAAATATTAA
TCGGCAACATACGCCCCCCAGCGTGCACTTGTCAGCACAACTATGATGTTATTTCCTCAT
TTTACACATCTTTATTCGATGCAATATTTTGCAAGAGTACGATTTGTACAGGTACCCAGA
AAGCCAACTTTCTCAAATTCAAAAATACTTGATTGGTAATCATAAGCAAAGAGCAGATCA
TGATGGAACATGGAGAGATGTAGTGGTACTAGATTTGGATCGCACAACAGATTTTGCCTG
CAAAAAGGAGGGATTTAAATGACAGAAAAGAGAGGTATAGGCTGTAGCTGGGCGACCAGC
AGATTCCTGGAAGTGAAGGAACAGGATTCGGCAAACGCCGTGTCGACCGATGGGGAGTAC
TTCATCAGGCCCCGGACCAGACTCTACATTTGACAAAATCGTTCTGCGAGCATCTGATCT
GCCCCTACCCATACGGGCCCAAAGGATTTGACCGCCATTTTGCGGCGGCGAAAGAGAACA
TATTCTCCTTCCAGATGAACAACGGTTCGAGATGGCGAGCTTGCGAGATGTTGAACCGAC
TGATGTTCGCTCCAGAGCCTTGTGTGTGAAGGTTGGCGCTAATAATTGTGTTCAAAGTTC
GCAGTGGTATCAGTTGATGTCTGAAAGACTGGGCATCTGAACAATCTTTTGCGATCTTAC
GAAAAAAAAAGGCGACGAAATGCCATGGAATGGATTGGCCGAGCTATGAAAAGATGGCAT
AAAGGCAGAGATGAAGGAACATCTCTGAAAGCTCAAAGGAGGTTTAAGGTTGAATAGAAG
CATGAGCTTTGCATGGCCTGAACTGTACTGACAATGCAACGTGGAAACAGATTATGATGT
ATGCTAAAGCAGAAGAGCACAGGACCGATTCCATCAGAATGTAACGAAATGCAATCCAGG
TGCATTACACGAGCACTGTGCACTACACAAACCATCCGAATGCAAGCAGGATCTTTTTCG
TGTTCGTGTAATTCTGTTCAAATTTTGCAGTGGTCACCACTCAGGCTGATGGCTGATGTC
TGAAAGACTGGGCATCTGAACAATCTTTTGCGATCTTGTCGCGAAAAAAGCCATGAAATG
TCGCGGAATGGATCCGCCGAGCCTGAAAAGATGGTATAAAAGCAGAAATGAAATTAAGGT
GCTGAAAGTTTGCAGGAGATTTAAGGTTGAATGGAAGCACGAGCTTCGCATGGATTAGGC
ATTATGCAGCTGTGCTGGCAATGGGCCACGAAAGCAACATATGCTAAAGCAGAGGAACAC
GGGACCAATTCCGTGTGAATGCAACGAACTGAAATCCAGATATATTACACAAACACACTG
AGAACACATTGAAAGATATATTACACAAACACACTGAGAACACATTGAAAGATATATTAC
ACAAACACACTGATAACACATTGAAAGAACGCATCAAATCAGAATTCAGAACAGTATAGT
TGAAGCCACAAGAGAATGTGCAAGCAGGATCAACGGAAAGAAAGAAAGCCATACAAAGTG
GAACGGGTGAGCTGCTCCTCGGGTCACAACAACAATGTTCACGACATGTCATTTGTAGGA
CAAAGATGTTCGGATGAAACCACAATCCACATAACAAGTAAAAGAGATATAGATATCGCA
TTGTTCGTGCTCCTGTAATTCGGGGCATCAAATGTCATAGGACAAACATATACCTGAAAG
GAAACATGATATTGCTCTGAAACTGTAGTAAGTCTGACTGACAAACAATGGTCTCTACCA
AAAATTTGCAACTACACACGGTATCTACCAAGGATAATTTCTTTCTAGCAGTATGAACTT
TAATACAACCTCACCAGAATTACAGGCCAAAAGGAGTCATAGGGACCCAACTAACACCTA
GAGCGCCGCGAGATCCATATGAGCATCCTTTTGCAGAAGCACCACTTCTCTGTTCACACC
CTAGGTAGAGCAGCACCCTTTCTTTGTGTTACCGGATGAATCGGCAACATTGATGGTGGT
TCCTTGAGTCGGAGGTCCACTGCCAGCAGCCTCCTGGGCAGCAAGCGCCTTCTTGCTTAT
GATCTGATGGATGTCGGAAAGGATAGTCTGAAACGCCTTCTCGACATTCAAGGCTTCCAG
TGCTGAGGTCTCGAGGAAGGATAGCCCTTCCTTCTCTGCTAATGCCTGGCCATCTTCCTC
TGGGACTGACCTCAGGTGGTTGAGATCAGACTTGTTTCCAACCATCATTATAACGATGTT
GGAGTCAGCATGGTCACGGAGCTCACGAAGCCACCTATTGATGTTTTCAAAAGTTTGCTT
CTTTGTTATGTCATACACCAAAAGTGCTCCCACAGCTCCCCTGTAGTAAGCACTTGTGAT
TGCACGGTACCTCTCTTGGCCAGCAGTATCCCATATCTGAGCTTTAATGGTCTTGCCTTC
TATCTGTAATCATACTTCCAGACTCGATCAGAAAACCAACAGAACTAAAATGGTAATACA
AACACTATCTCAGAGAAATGGAACATGAAAATTTACTTGCTAAAATAAAACTTGCCAAAG
ATATACACATGGCAATAGAAAAACAAGCAAATGATAGATGCATTATCCTAGAATTAGTAA
AATTCACTTCAAAAGTTTGACTATACTAGAGCAGTAACACGCGTACATGATAAAATGAAA
CAGCTCCTAAACTTGAAAAGTTTAAGTGCTCTTTTAAGATGTACTCTTCTATATAAACAG
GCCATGTTCCGAGAGATGAAGATCGAAAGGTCTGATCCATAAATCATGACAATACAGTGC
ACAGACGCTACGTGAGCTGAGTCAGCCATTCATATTCAAGTGCCAGCGAAAACTAAATGC
CATGCATAACTGCAATTGCTGTGACAGTTTATGAGCATTGGTTCAACTGAAACCGGTCTT
ACAAGACTGAGAAAGGAGTGTGGACTTGTAGATAATTTCCATAGTTTCTATGTAAATAAA
CCAGCACAACAAGTCTTGGTCACAGTTGCAAGTTTCCTTCTTCATTTTTGATGAGGAAAG
ACGGTTGCTATAAAAGCCAGATCTGACTTAAAAGTTGATATACTGCCCTTGCAGAATCAA
CTTAGCACATTTTTGTGCAACCAATTCCAGGGGTCTCCTGACCACAGATAAAACAAATGG
CACACACAGCACAATGATGCAAAAGCAGCCGTGGGTACTAGACTACCTATCAGCAGGCAA
CACGTGCAAAAGAGGCATCATCATTATAGAGATTAGCTTAACTTGGAACGATCTAGATCA
AAACCGTGGGTACATCAGGTGCGCATGCATCCCCAGTCCCAGACCACTAAAAGCGTGGGG
AGAAGAAGAAGAAGAAGGAGGAGGAGGAGGAAATCCCTAGATCGTGATGGTGGGAGGCTA
CCTGGAGGGTGCGGGTGGCGAACTCGAC