morexGenes - Barley RNA-seq Database

Contig contig_55712
Source Contig contig_55712
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55712 (6595 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
No map location	No map location	No map location
Predicted Genes from contig_55712

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68992	3	2409 bp	MLOC_68992.3	Available	Available	LOC_Os05g38480.1, FRAME:-1, EVALUE:0.0, 13105.m04036 protein kinesin motor domain containing protein, putative, expressed
CDS Structure of MLOC_68992

Contig Sequence (6595 bp)

>contig_55712 6595 assembly3_WGSMorex_rbca.fasta
GTCACCCGACAATCCACAATTTCCTTTTGGATGCTCTAGACCCTGACGCCTAACCGTTTG
GAATATGCACAATCTTCAAAGGTAACAAGCGTTGGTTCCACATAGAAACAATCTCTTCAG
TGATGCTCAATCACTTTGGGTTGTAGGTCTTGGTGTTTTGGATTTTTCCCCATTGATGAT
TTTCTCTCATAGCCCTTGGAGGATGGGTTGATATTAAATGACACTTGTCAATTTCTCTCT
GAGAGCAGCCAACCAACTAGTGGTTGTGGGGGCGGCTATTTATAGCCATGGTGCAACCCG
ACATGATATAACATAAATTGCCCCAATGATATGACCGTTATGTAGATAAGATATTTCGAG
ACAACTGGCGCTAAGAAAAACAACGGTCATAATTTTGAACTATGAAAGTCCTTAGGGCTA
TCATGTTTCTCACGGTAGGCAATTCACATTGGCAAAATCCTAAATACTCAGTCAGACCAA
TTTCCTCAAAGACCAGAAGAACTTCGTCTCTCTCACTAAAGAAATTGACTGAGCTGCAAG
AGATTTCCAAAGGCTTCACTCGGAGGATTGGTTATGTGTTGGCTTTTGAGATGAGCATCA
CTTGGAGTTTTTTTCTTAGTATTACCTCGACCCCTTCAACAGTACAATGTTTCCTATGAC
TCCAAGAAAAGAAATGAAACTACAAAAACAAAAAAAATCACTCTTCGTAGTCTTGGCATC
AATATCTTCAAGGTCACACCATTTCTTTATTTTCTAAGTCTTCAGTTGAAGACATTCATT
TTTAGGGATCGACATTTGTCGGATATAACAAACTCCTCACCGACTTATAGAGCATGTGTA
CACTAACAAACATATTAGTCCCTTAACCAAGTCTTCAATACACCAAAATCACTNAGGGAC
ACTAGATGCACTTACACATGCTTCGAGCGAAACTAGCGAACGGGTTTACATATAGGCCGG
TCACATGCAGTGCGAGGTGGTTTTTAGTCTTGGGCTTTGATAAATTAAAATCAATCAAAT
AGGACAAACAATGAAAAAAATAAGATGACATTGACATCATACTTAGATGTGAGGTATTAT
CTCACATCTAGTGGTGACATAGGCAAACCCATCAAAAAAGTCTTACATTTCGGAATGGAG
GGAGTACTGTTTTTTATGCGGAAAAGACCCAATACAATATATTAAGTATCACATTTTCTT
ACAAAACACCTTTATAAAAGAAAGGAAAATACATCCAAAATTGTGCACCCAACGACGATG
GGCCATGAGCAAAGCTCGTTGCTGTCTTTGGGTCTACGTTTCAGTGAAGCAAACTTGTTT
TAACCGAAAAGCATGTAGAAACGACAAATGGGAGTTGTTGACGTAGACGAGATGACGAAG
ACAATGAGAGTCACCGCCGCGTTGAGCCATTGAGGATAGATATGGCTGAACCTTATTTGC
CGCCGCCATCACCATCGCAGGAGATGAAACCATGGATGGTCAAAAGACCTTAAGTGCCAA
ACCCCTAGACTATTAGACTAGATAAATAGATCTGTGAGGTAGCAACCGGGTTAAAGCAAA
GGATAGATGTTTTGTTCGTGTCTCGAGCTGCTTGTATACGACATTCCTTGCAAACACGAC
AATGCTCATTTCGGTTTGTATATACTTCCTCCGTTCCTAAATATAAGTCTTTTTAAAGAT
TTCACTATAAACTACGTACGAGTGTATATAGACATAATTTAAAGTGTAGATTCACTCATT
TTACTTCGTATGTAGTTTATAGTGAAATCTCTAAAAAATCTTATATTTAAGAACGAAGGG
ATTAATGTGCATACTCCTTTTTGAGATGCCAACATTATACAGTTAGAGCATTGGCTGCTG
CGCTTTCATGGACATCAAATGAGGTCACCCTGGTGAACCGTTGACGCCATGTCTGTTTAA
ATAATGTATCAATAAATAATTATAATTGAACCGGTAGCCCGTCTAGCTCAGTTGGTAGAG
CGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCACGGTGGGCGATTTGGTTTTT
TTACATGTTATATTCGTTTTTGCTGTGTTGTGTTTGCTACACAACTGATGGTTAATGTTC
GTCCGAAGTATGCAAAAAACATTTACCACTGTATATCCTACAGGCCAATCCAGGGATACG
AGACAAAACAAGCACACAATCATGTGATGGGTTCCCTACAAATTACAATGCATGCAAACA
AATGCTCACTTCAGCACACACACAAAAAGCCTACTGTCATGGGCTCCTACAAATTACAAT
CCGGGCAAACTAGTACACAAGTACGCTTGAAATCTCCTGTGAGATATACAGATCATGTCC
GACATCGAAATAGTTCACACACAAAGTTTTGCCGAGCAAAACTCATTTTCACCTGCTCGC
GCAACAAAGCTAGTGCAATATGCAAGCCATTCAATACACAAGATTCCATATAAAATTTGA
ATTACATCAGGAAGACAAACCATTCAATATGGAAGATTCCAGAGAAAATTTGCATCACCT
CAGCAAGATAAGTTACAAGAGAAAAATTGCAACAAGACCCATTGCTCTAGGTTTAGTAGC
AACAGCAACAGCAACAGGCCTGCTGTTGAATTGAGAGTAAAACTGCAATTATGTCAACAA
CATGCTGACAGTTAACAGCACAAGTACAACACCATACGTTGGTGACACGGATGGTGAACC
AATATGACCCAGCATCTCCAAGGTGGTAGATTACAGGTAGCAGTCCATTCTAGTGATCAT
TTGAAGATTCCGGTGGCTGTTTTGCGTAGGATATCCTGGATCTGTTTGAAGCAGTATAAA
AAAAAACATGTCAAGGGCTCTGTTTTATGTACACAGCTTGTACAAGAAAGAATACAAGAA
TATGTCCAAAAGGAAAGTCAGCAGAAGAATTACTTGTTTCGTTGATAGACCTATGTTTCC
CAAGTCCGAAAGCTGCCAAATCACATTATGTTAAAAAGCTGACAAATACAGGTGACCTTC
ACATTCAGTATTAAGGATTTCATGGTACATAAATCTTACAGATCGGAATGGTCTGGGTGA
ATCCTCCCGGAGCTCGAGAATGTAGTCTGCTCTCTTTTCACCAATTCCCTGAAGAAGAAA
TGGGAAACATTAGTAGGAAAAGGACATGCTGCTATACCATCTATCAGATTATTATGAAAT
GTAAGGACCATACTTTCAGTTGCTGTAGCTCTTCCCTGCACCCATGGATAGGCAGGAGTA
AATAATTAGAAAGGATAGAAGGTGGCTTGTGCGTTTAACAGAAGCCAACTACATAAATGA
ACTATAACAAACTTGAGGGTTTATACTTACTTGTTCGCAACATTTAAGAACTCAAGATAC
TGTTGAATAAGAGATTCCTGCGTAACATAGAGATGTTTAGAAATCGGTACTAAACTAAAA
CAGGTTGATGATAATATTCCAATGAAGGAGTACTATGAAATAGGAGAAAAATCATGCAGA
CCTTTAGGTTAGATCCCAGTGCATTAAACTTATCAAGAGGTGTACCATCTGGGTTCTTCT
GAACTATATGATGTGCTCCTATTGGAGTTTTCAGCTCCAATGAAGGAGGGCAATTGACAT
TACAGGGAGTCATCATGTTTGAAGGAATGGGAGAAAGAGCTTTCCTAAGAGGAGATTCAG
ACTTGTCCTCTTTGCAAGGAGTTAACGACGGGGGTACCTCTGCATAAAACATGTCATATG
GCTCAGACTCTAACATGGAAACATAGATCAAATTCCAAAGTTATACAACAAGCAAACCGA
AAGTAGATTGTGTGCAATTACTTTCAATTGAATAGCTATCTTTTTTAATTTAAACAGTTT
CATTTCTGTTAATGGTAAAGTCATGAACATTAGTCCATTCTTGCTGCAACTTTTGGTTTG
TAAATGTTTTTGCTCTGGACCATTATCTTTCCAATGCAATGTCACGGAAAGCTCTTGTGC
ATTCATTAGAGTTTTCCTTTTTGTTTCTTCGCTTACTGACCTTTGTACGTTCAGAATCTA
TATCCAATTATCTCTTCTGTATATTTCAAACACCATACCTTTCTTAGTTGTCTTTACTTC
ACCTCGTGAGCTCGGTCTTGGTGTGTTTTCAGCAGTAGTATGGACTTCTGAATCAAAAAG
CACCCTGTGAAACAGAAGATAAAACAGCTAAGAGCTCATAATTTCAGGTGGTCTATGTCA
GACTTGTAGAGCAAAATTGGAGACACTGACTTCTTTATTTTAGCACCGTCTTGGTCCATT
GCTTTAGCTCTACCCGACACCCGGGCAGATAGTGGTTGCTTCATATGGCTCATGGAAGAA
GGAGTCTTCCATACAGTTGGGGACAGAAGTCCATTCCTCCTTTGGACACTCTTGGTTTTT
CCCTTTGATTCCAGCCACAATTGCAACTTCGCTTCCATGTCCAGCTTTACTTTTGGAGTC
TGTTCCTTGCTTGTCGAAGGCGTGTTGGTCACCATATGGCCTGAACGAGCAGCCATACTT
ATTGTGTGGACTGCCTCCTGGTATTCCACGGGATTCTGTGATACATGAAAAGCAATCAGC
AAGTATCTATACTCTGTGGGATGAGACGTCTAGAGCAGAAACTCACCAGGCAAGCTATCA
TCACAGCACGGCTGTTGCCTCCTAGAGAATCTTGCAGTATGCGGGTCAATTTACTCTCTC
TATAAGGTACCCGAGGCTCATTCTTCTTGAGAGCTGAAATGACATTAGATAATGCAAACA
GTGAAGAATTGATCTTAGAGCTTTCTTGAAGGCGGATCCCTTCATTGCAAGTCTTTCTAT
TGTCCTCATTTCCTGAAATGAAACCAACACGGCATGATCTTAAACTGGAAATGCAAAGCT
TTTATACGTTCTATGCACCTTATTACAGGGAGTCATACCAGCCAAGTCGATGAGGTTAAG
CTTCCCTTTGACAGTATCATTACTGATCCTGATAGAGAGCACAGCATGGCTCCTACTTGA
GACATCATTCAGGCCTATGTGGGCGGCTTTTCTCCTCTGCACACCTATCGAGTAGACCTC
CTGAAATTCCTCCATTGATCGCACAGGGACCTTAAACCACGAAAAGACAACAGTAAGTGC
ACTGCAGAAGCTACACTTCAGCAACCACAGACACCCGAGGATGACCAAGCCCCAGCGCAT
TACCCAAGCCAAGCCCTTGAGCTGTAGGTTGCCAAGTTTGTCGTCGAAAGCCATGATCTC
CTTTGCCTTGGGCTCGAGCAAGTCATAGCACCGTTCGAGGTACACCTCGTAATAGGAGAT
CTCCACGGAGCACCACGTGCCGGTGCAGCGCGCCAGGATGGTCGCAACCGACAAAGGGAT
GAGCCCCGGCACATCCTCGCTGCCCTGCACGGCAACAAGGTTTGTTACAGAAACAGGTCG
GCCGTGCAGCAGGGCGGCATTTCTTCAAACAGGTTGTGGGCAAGACCGGGAGAATGGAAT
GGGCACCTGCATCGTGTAGGTCTTGCCGCTGCCGGTTGCCCCATAGGCAAACACGGTCGC
GTTGGTGCCCTCAAAGATGCCCGGGATCACGGCGCTGAGCTCCTGGTCAAATACGTCGGA
AACCCTTTCCTCTTGGCCGAAGTAGGCGTCCACCTTGTAGCACTCGTTCCGGCTGCACGG
ATCAGGAACAAATCGGTTTACCAGAGGAAGGATCAGGAAACAGGCAAGGACAAGAGGTAG
AATTGGCCGTCGGCACCGCTACAATTTTAGAGTTAATCAGATCTCAAATCATGCGGCGTT
TCCCTGACAGCTACACCAGGAGGGAGGGGAGCTGCGAATTTAGGAAAGTGCCGATAACTA
CTCGATTCGAGAGGCCGAGGCGGGTACCTGGTGTGCTGATCCTTGAGCTGGATAGTGACC
TCGCCGCCGGGGTGGCGGCCGATGAGGGAGACGCAGGGGGCCGCCGCCGAGCTGGCCTCC
GACGGGAGAAGCGGACGCACCCGCAGCACGACACGCACTGACTGCGAGGAGGAAGAGGAG
GCGGCGCTCGCCATTGGGGAGAGGTCGACCGCGGTACACGGGAGAGGCGGGGGAGTAGAT
CGGGATGGGGCGAGGTTTTGGATCACCCGGGCGTCGTGGACCCTTTGGGGGGCAGGGAAG
AAGACGGTGACCGTTGCCGGGGAAGCGGTTCGAATTTGAACACGGGAGGCGGGTCAGGTG
AGGAACTCGTGGGCGCGGTGAGCCTGCGAGCAAGGCAGCTCCAACCGGCCAACGCACACG
GGTATACGGTGAGGATCCAAAGCATCTACGGCCGAACATCGTAAATATGATTCATTAAGG
ACGTGTTTGGTTCGTTGTATTACATCTGGCTCGCATCCATCATGCAATATATTGATTGTT
TGGTATACTGTATGTTTAGTTGGACCTGACCCGACATATGTAAAAAACGCCTCCAGGCCA
GGCTGAGGGGAAACGCAAGTTCGGGCCGTTTCCGCGAGCGTGCACCCGCGCGTGTAGCGA
CCCAGCGACTCCCACACCCATGCGAGGATAGGGTTCCCTCCCCGACGCGTCGCTCTCGTC
CCTGACACGCCGCTCTCGTCCCCCACCCCGACGCGCCGCTCTCGTCCCCCCCCCC