morexGenes - Barley RNA-seq Database

Contig contig_55677
Source Contig contig_55677
Contig Data
|Contig Location|
|Microarray Probes|
|Predicted Genes|
|CDS Structure|
|DNA Sequence|
morexGenes
Links
Map Locations of contig_55677 (7468 bp)

Morex x Barke POPSEQ 2013	Oregon Wolfe POPSEQ 2013	Morex Genome Release 2012
	No map location	No map location
Predicted Genes from contig_55677

Gene ID	# CDS Predicted	Max CDS Length	Probes in Cluster	FPKM by Treatment	FPKM by Replicate	Top Rice Hit
MLOC_68977	1	206 bp	None	Available	Available	None
MLOC_68976	1	2852 bp	MLOC_68976.1	Available	Available	LOC_Os05g49290.3, FRAME:+2, EVALUE:0.0, 13105.m05274 protein 3-ketoacyl-CoA synthase, putative, expressed
CDS Structure of MLOC_68977

CDS Structure of MLOC_68976

Contig Sequence (7468 bp)

>contig_55677 7468 assembly3_WGSMorex_rbca.fasta
CAGATGAAAGCGAACAGGAACATCAACGCGTGGAGGACAGGAGGTGCCACGAGATCAAGT
GAAAAGGGAACCAGCAGCAAAAGGAAGGAACGCCATTGAGCATACTAGGAAGCGACTAGG
AAGCCGCCGATGGCAGCAACAAGGGGATGAGCGCGCGTGGAGCATACTCCCTGTCACAGC
GGTCCGAAGTCGTCCAGTGAGTCATGACTTATCAATTTTTTATCATGTATTACAAAAAAT
GTTCATCAAACTAAAAAATGTTTGTATATTTCAAGATTATTTCTTTTAAAACTGTTAGGC
GATTCTAGAAATGTTCGCCAATTAAAGAAAAAAATGTTCACAATTTTAAAGAAATATTTC
CGAATAGAATAAAATGTTCATGAATTCAAAAAAGTTTTTGATTTTAGAAAATGTTCAAAA
ATTTGTATAAGTGTTCACAAATTCCAAAAATGTCCATGATTTTAGATATGTGCAAGGGTT
TTAAAAAATGTCCATGACTTCACGAATTTGAGAATGATAGTGTCTCGCCGTCTGGGTGAT
GCAGCAAAATATGAACATGACCATTTAAGATTATGATTTGTTTTTTTCCATGACAACGCA
CGGTCCTTTTGCTAGTATATTCAAACGCAGGAGCAGCAACAGAAACGCCCAAGCAGCGGG
CAACAATTATGTCGCGAGGGAGGGATAAATACTGAGACGCGATGATGGCTCCTTGTGTAT
TGGCTGTTGGGGTCGTGATTGTGATTCCGCGTGACGGACGGTTCACGCACAGCAGCGTCC
GACCTGACCCGAGCTCCGGGGACAACTTTTCTCCTCGGAGCCGCCCGCTTCTCGGCGCAC
GAATCCACGTCGGGACGACTGCGAAAATGGACGGTTTTAATTTCATTCTATTTGTGCCCA
CCCCAAAAAAGTGCCAAGGGGAGCACCTGGGGCCAGCCTGCCTTGTGCCGGGAGCTCTCT
TTGCCTACCCGGCTCCAGATTTCCTTTTCTTTTTTCTTTGCCTGCCCTTGTTTTCTGGCT
GTCTGCCGCCCTTTCGCGCACGTCCTGCTCACCACGCATATTTCTACACCACTCCTGGGC
TGCCTTCCTGCCGTCGTGCGTGTCCCTATCTATCTGCCGCTCCTTCAAGCTTCGGTTATC
TCTCTTTCTCCTCGCGGTTAAGCCAACCATGTTCCTGCGCTGCGCTGAGCTGAGCTGGGG
GTAAATAAAGAGTGCACTTGGAAAAACATCGTCCCAACAAGTTTTAAAAAAGAAGACAAA
ACTTGCTACAGTAGACCATCTAAAAGTCTTCGTGTTAATTAAGGCCAGGTAAGAAGAGAC
ACATATATCGAAATGATCCAACATGGAGACTCAAAAAACGTATACCAGATCCGGACAGAT
CCATCAGAGACGACCGCCGACCGACCGAACCATGCGAGATCCGTCGTTGCATATACGACA
TTGATGCCGCCCCACAAACCAAGTCTAGCATGAATGCTAATGTGTGAATCTTTCCTCAAG
CCAACTACAGGGTACTTACTTCTTTCATCACTCTAACCTTGTGTTTCCTTTGGCAAGAGA
GGAACAACCGGGTGTTTTATAACGTCTCTTCCTCGGCTGGTTTCATTAATTCCCGACATA
ACAAGAACACATGGTGGTAGTCTTGGTAGGTTAGCCTGGTGGAGTGGGTCGCTGAAGCCG
GGCATTTGCGGTGTCATCTTTTGTGTACCTTGTGTTTTGTTCGTCCATGAATAAAGCGCA
ATGCTCTTGCAAGTTTTGAAAAGAAGCATTAGGGTTTTGGCGGGATGTAATTGCCATCTC
TCGGAGGGGCAATTCCATCCGAAAAGTGACCACTATTTGTAAACATTTTCTTTTGAGATC
TATGTGCAAACATTTCTATGCAAATCAACGGGACCATTCAACCGTGAGTCCATTTTTAAA
TGTTATAGCTCAGTCAGATGACAAATAACACTTTCTTAGCATACATTGGTGAATGATAAA
AGGTGTTATAATCTGATTTTATTTTGTATTTGCACGAATCTCATCTTCAAATCATGCTTA
GGAATATTATTTCAAATTTGTATGAGCAATATAGCAAAACAATAAAGAAAAATTCAGGTA
AACCACACTAGCTAATTTATTTCTTGGTTGTTTGAAGAATTACAAAAAAAATTCAACCAA
AAGCCAGTGATACATGATGGAAGGAAGTTTGAAGAATCATTTTACAAAAGGCAAGTCAGC
AAATCATTAACAGAAATACCACATTCTACAAGGGTTCCCCTGTAAAATTCCATCCGGCGA
ACGGAGCCAAAAAACCCTCCTTTGAGTCTCCTCCCACCTCGCCGTCCGATTATTTATCCC
CTCCCACTCTGCCAACAACGGCCTCCGCCTCCTCCGCCGCCGCCGGATTCGCTCCCTCCG
CCGGCCGGCACCAACCATTCCCGCGCCGCCGCCTACCTCCCCGCCGGCCACCGTCGTCCC
CCTCCCGCCCCAGCACGCACGCGTCGTCAAACACCAGTAACGCCTCTCCCCTCCACCAGG
TCCACGCATCGGCCCATCCATCCATCCATCCATCTTTGACTCGTCAGTTCAGATTCCGCA
TCCAGATCTAGGCGCCCGATCCGGGGGCCGATGAACGGAGGCATCGCTCCGCCGCCGGCG
ATGGAGACGGCGGCGACCACGCCGAGCCACCGGCGGCTGCCGGACTTCCTCCAGAGCGTG
AACCTCAAGTACGTCAAGCTGGGGTACCACTACCTCATCACCCACCTCATCACGCTGCTG
CTGCTGCCGCTCATGGCCGTCATCGTCCTCGAGGCCGGCCGCACCGACCCCGACGACCTC
CGCCAGCTCTGGCTGCATCTCCAGTACAACCTGGTGTCTGTGCTCGTCCTCTCCGCCGTC
CTCGTCTTCGGCGCCACCGTGTACGTGCTCACCCGCCCCCGCCCCGTCTACCTCGTCGAC
TTCGCCTGCTACAAGGCGCCCGACCACCTCAAGGTCGGCTTCCAGGAGTTCCTCCGCCAC
TCTGCGCTCTGCGGCTTCTCCGACGACGCCCTCGAGTTCCAGCGCAAGATCCTCGAGCGC
TCGGGGCTCAGCGAGGAGACCTACTGCCCTGAGGGCATGCACGCCATCCCGCCCGAGCCC
ACCATGGCCAACGCCCGCGCCGAGGCCGAGTCCGTCATGTTCGGAGCGCTCGACAGCCTC
TTCGCCGCCACCGGCGTCAAGCCCAAGGACGTCGGCATCCTCGTCGTCAACTGCAGCCTC
TTCAACCCGACGCCGTCCCTCTCCGCCATGATCGTCAACAGGTACAAGCTCAGGGGCAAC
GTCCGGAGCTTCAACCTCGGCGGGATGGGCTGCAGCGCCGGCGTCATCGCCATCGACCTC
GCGCGCGACATGCTCCAGGTGCACCGCGGCACCTACGCCGTGGTGGTGAGCACGGAGAAC
ATCACGCAGAACTGGTACTTCGGCAACCGCAAGTCGATGCTCATCCCCAACTGCCTCTTC
CGCGTCGGCTGCTCGGCGGTGCTCCTCTCCAACCGCGGCGCCGACCGCCGCCGTGCCAAG
TACAGCCTCAAGCACGTGGTGCGCACGCACAAGGGCGCCGACGACAAGGCCTTCAACTGC
GTGTACCAGGAGCAGGACAGCGAGGGCAAGACCGGCGTGTCCCTGTCCAAGGACCTGATG
GCGATCGCCGGCGGCGCGCTCAAGACCAACATCACGACCCTCGGCCCACTCGTGCTCCCC
TTCAGCGAGCAGCTGCTCTTCTTCGCCACGCTGGTGTCCAAGAAGCTCTTCAACGCCAAG
GTGAAGCCTTACATCCCGGACTTCAAGCTGGCGTTCGAGCACTTCTGCATCCACGCCGGC
GGGCGCGCGGTGATCGACGAGCTGGAGAAGAACCTGCAGCTGCAGCCGGTGCACGTGGAG
GCGTCCCGGATGACGCTGCACCGGTTCGGCAACACCTCGAGCAGCTCCATCTGGTACGAG
CTCGCCTACATGGAGGCCAAGGGCCGCGTCCGGCGCGGCGACCGCATCTGGCAGATCGCC
TTCGGCAGCGGCTTCAAGTGCAACAGCGCCGTCTGGCACGCCCTGCGCAACGTCAAGCCG
TCGCCCACCACCCCCTGGGACGACTGCATCGACCGCTACCCGGTGGAGCTCGTCGACGGC
TTCCCCACCCACACCCACAAGTAACAGCAGCAGCAGCAAGCACCCATGGCCATTGGAGCT
CTTCCTGATACAGAAACCTCACTCAGAATGGATCAATTCAAATCCATTTATGGCTGGTTA
CAAGAGACACAATTAATGGTACTGCAAGAATGAATCTCCAGGCGTGGTGCAAGTCTGCTC
TGCTCTGATCTGTATGAATGCAACTCTGTGCTCATCTTCAAGAAGGTTTTGACCATCCTG
CCCTGACCCTGTGGTGGTAAGTTTTACTCCAGTAGTAGCATAGCAGAGTGGTGCTGAGAA
GGTCAGTCAATGAGATATGCCTCTTGTGTTGTTGTACTATGTACATTTGTTGTCTCTTTT
AGCCATTGCTGCCGATTTGCCATTCACCATACAAAGTGACTGGTCCATAGGAGGAGGGGC
CAATCTCTATTTTTGATTTACATGAGAAATTAAGAGATTCATTCATGGTGGTTACAGACA
GTGTATTATTGGTTATGCCGACTGAACTTTGGAGCATGTATTTGTCATGTTCAATCGATT
TTTTCTCTTCTGCTCCATTTGGCTGTTTTGCTGACCTTGATATGTACGCCTCAATTGGTT
TTATTCCTAGTATTTTTCATCTCATCTCTGTCATACTATGGAAATCAGTTACTACTACCC
TAATCTCTTGAGCAAGTTGGTGATGATCATGGATTTCTCTCGTGTTCACTTCGCCCAACA
GCGCAGCAGGTTGGCCATAGAATGTTTCATGCATTCAATGGCGTTCATTCATTGCGGAAC
CAACCAACGGAGAATGTTCTTGGCAGGAGCTAATCTCCTACAGTCCTACTCTCCTCCACT
GGCAGTTGATTTATGAAGGTTGGTAGCCTGGACAGACTGTACCACGTGCGCATCATCCTT
GATGTTAAAATTCAGGCCTCCCATTCCAGATGTTTTTTCTTAGTACCTTTTATTTTTTTG
GCAACGCTTCAGTTGCTGAATAATACTCCCTGGGTATTAAATTATAATGTGTCCTAACTT
TTTTCTAAATCGGATATATGTAGGTGCGGCGATACCCGGCCGTTTCTTTTTTACTTTGCG
TGTATAATTTGTCAGAAGTCAATCTTTATAAAGTTTGACCAAATCAATATTTGAAAATAT
CATCATTTATAGTACTAAATTAATGTACCATATAAATGTACTTCATGATGGGATCTAATG
ACTTAGTTTTTGTATTGTGGAAATTAATAGTATATGTAGTTTTTTATGCAAACTTGGTCA
AGCTTTGAAAATTTTGACTTCAGTCAAACCTAATATGTGGAGTAAAATGAAACGGAGAGA
GTACTAGTCTAATAAAGGACGTCCCTTTTCCTCTCTCTGGGAAACCCGATTCTGAAAATC
AAAGATCCCAATGGCAACTGGGTAGAGGAGCTCGATGATATGCATGAGCATATTTCAGCT
TACTTTACCTCTCTCTTTACAGCTGGAGCACAAGGAGATGATGACACTGTCATTCAGACA
GTCAACCCTAGGGGCACACAGGAGATGAACACAATGCTCAATAAACCCTATACTAGAGAG
GAGGTTAAAAAAAGCTCTGTACAACATTGGTGATTTCAAAGCCCCTGGCCCTGATGGCCT
GCATGCTGTTTTCTATAAGCGGTTATGGCATATCATAGGGGAGGATCTGGTGGACGAGGT
GTTGCATGCGATACAGACCAAGAAAATCCCTAGGGAATGGAATAATACAACGATAGTTCT
TATTCCTAAGGTGGACAACCCTGAATTTGTTACACAATTCAGGCCTATTAGCCTCTGCAA
TGTTCTATATAAGGTCATATCCAAAGTGCTGGCAGTGAGACTAAAACTGGTACTATCAGA
GATCATATCACCCAACCAGAGTGCATTTGTACCGGGCCGGCTCATTACCGACAATTTCCT
AGTAGCTTTTGAGTCCTATCATGCCATCAAGAGAAAGACATCGGGGTATGGCACCTGTGC
TGTGAAACTAGACATGCATAAGGCGTATGATCGGGTGGAATGGAGATTTCTTGAGAAGAT
AATGATCAAGCTAGGGTTCAGCGCCGAGTGGGTGGCCCTCATCATGGAATGCGTCTCCTC
AGTTCAGTATCAGGTACGTATTAACGATCATCTATCAGCACCTTTTACTCCAACGAGGGG
CCTCAGGCAAGGCGATCCACTATCACCATATTTATTCCTGTTATGCACGGAAGGCCTGTC
TAGTATGCTCGCTTCCGAGGAGATGGCTGGTAATATTACACGGGTTAAAGTTTGCCGAGA
TGCACCAGCGGTCTCCCACCTACTCTTTGCTGACGATTCACTAATCTTGATGCGCGCCGA
CCAGGCAAATGCAACATCCCTCCGGAGAGTTCTTGATGACTACTGCAGGGCCTCGGGACA
GTTAGTCAGTGAGGCCAAATCAGCGCTATTCTTTAGCCCTTGTACGTCAGTCCAAGCACG
AGTGGAAATCTGCACCACTCTCAACATCATGGCCGCAGCTATCTCGGAGAAATACTTAGG
CCTGCCGCCAATTGTTGGAGTGGATCGCGCAGACTGCTTCCAGCACCTTGTGGAGAGAGT
TCTGAGTATGATCAGAGGGTGGAAAGAGAAGCTTCTCTCGGTGGGGGGAAGAGAAATATT
GCTCAAAGCAGTAATACAAGCTATTCCCTCTTATGCCATGTCTGTGTTCAAACTACCAAA
GGAGATATGAATGAGATTACATCGGCTATCTCAAAGTATTGGTGGGGTGATGAAGAGCAG
AAAAAACACATGCACTGGTTTGCATGGTGGAAAATGTGCGTGCCAAAAGAAAAAGGAGGT
AGGGGATTCAGAGACATCCAATGTTTTAACCTAGCTCTCCTAGAAAAACAATCTGGGAGG
CTCCTATGTTATCCAGATTCATTGTGTGCAAGGGTTCTCAAGGCCAAATATTACCCAGAT
GGTGATCTGCTTAACTGTACCCTAAAGAAGGGGAGCTCCTACACATGGCAAAGTGTGTGG
AGTGGATTACAAACATTCAGACAAGGCATCATTTGGCGTGTGGGAGATGGAGCTTCTATT
AAAATCTGGGAGGATCCGTGGATACCTAGCAGCCCCAACAAGTAACCTATGACTCCACGG
AGTAATATTGTGCTAACTAAACTTTTTGAACTTATAGATATGATAGCAGATCATGGGATG
AGGTGCTCATCACGGATATCTTCTGGCCAATTGATGCACAGCGCATCTTAAATATTCCCC
TGGCGGTGGGAATGATGGATGACTTCGTTTCCTGGCACCCAGACAAGCGAGGCATGTTCT
CGGTGAGATCGGCATATCACCAAGAATG