Map Locations of contig_55661 (9470 bp)

Morex x Barke POPSEQ 2013Oregon Wolfe POPSEQ 2013Morex Genome Release 2012
No map location




Predicted Genes from contig_55661

Gene ID# CDS PredictedMax CDS LengthProbes in ClusterFPKM by TreatmentFPKM by ReplicateTop Rice Hit
MLOC_68965 1 1054 bp AK368799 Available Available None
MLOC_68966 1 136 bp None Available Available None
MLOC_68967 3 1520 bp AK363800 Available Available None





CDS Structure of MLOC_68965






CDS Structure of MLOC_68966






CDS Structure of MLOC_68967






Contig Sequence (9470 bp)

>contig_55661 9470 assembly3_WGSMorex_rbca.fasta
ACTACTCCCTCCTTGTCATGGAGGCCGCCGGGATGACGAAGATGGACTCCGGTGATTATT
ACCCCCTACGGCTGGGTGTCGGAATAGGGCTTTGGATGAGATTTCTTTGGTACATAGGCT
TGTGGTGGTGGAGCGGAAGTTCTAGGTTTATTTCTCAGGGTTTCTCTATTTATAGGATTT
TTCAGCGTTGGAATCATGCTAAACGAAGCCACGGGATGGTCCCAAGGCATCACAGCGCGC
CCTAGGGGGTGGTTGTGCCATCTTGCCTTGGGGGCACCTGGTGGCCCCCCTTCGGTGGTT
CTTCGCTCCATTATTTCTTATATGTTCCATAAAAAATCATCAAAAAATTTTGGACGATTC
CGCGAACTTCTATTTTCTGCACAGAAACAATACCACAGTAATTCTGCTGAAAACAACATG
AGTCCGGGTTAGTTCCAATTAAATCATATAAAATGCATCAAAATCATATAAAAATTTGTA
AACATGGCTAAATATGGCATGAATACTTTATAAATTATCGATGTGTTGGAGACGTATCAG
ATAACACCATGCTCACGGACAATAAACTCCATGGGGATATCCCGGTGAATACACAGTCAT
TTCTATTGTTGCATATAGTGCTAATACCCGACAACAACTTCACTGGTACCAGTTCGACCG
AGTTATCTTCGAATATCTCTCAAATTGGGATGGAAAATAACCAGTTGTCTGGCTCCATCC
CAATCTTGCAACCGTGTTATTGTTGTTGTTGTTGTTGATGATGATGATGATGATGCAAAA
TAACTAGTTGTCAAGAGAGCTACCAACCAACATAAGTAAACTCCATACACTTTCTGTGTT
GTCATTATCTGGGAACAAGAAATCTTGATCCATATGAACAACAATTGAATTTTTCTAGAA
TCTCAAGTCACCTAACCTCTCAACAACCATGGGTGGATGTGCCCCCTATGGACCTCCACC
TTCTTCACGAAGCTATGTGATGCTCCGATGATATACCACTCAAACTTGGAACACATTTTT
CTCCTGAATCATGACGTCTACAACAATAACTTGTCTCACACACTCCCGGAGCAGTTATGC
ACCAATGAAAAACTCTACAACGTAGCATTTTTTAACAACTTTTCTAATGAGCGTTGACAA
TTACCACTCGCTAGATAATATCATGCTCAACAACAACCTCTTGGATCAATTGAATTGTTG
GATAGTATCATATCAACTATAGGGAGAGCTACTGGACAACATAAGTAAGCTCCACACACT
TTCTGTGTTGTTATTATATCGGAATAAGATATTTGGATCCATATCAATATCAATTGAGTT
GTTGTAGAATCTCAAGTCACTTGACCTCAACAACCATGGGCAGATCCACGTGGACTGGCA
CATATCCCTTATGGCTCTCCTGTGACTTACCACCAGAAGTTGGGAAGCACTTGCCGCTTG
AAAAATTTGATGTCTACAACAAAAACTTGTCTAGCTCGCTCACGGAAAATTATGTGCCAT
TGAGAACCTCTACACCATAGTACTCCCTCCATCCGAAAATACTTGGCATAGGAATGTATG
TATCTAGATATATTTTAGTTCTAGATACATTCATTTTTATATATTTGTGCGACAAGTAAT
TCCGGACGGACGGAGTAGTTTTTAACAATAACTTTTGTGACGAGCTTCCAATGAGCGTCA
AAACTACCTCTCGCTAGATAACGTTATGTTGAACAACAATAACTTCTGTAGGGAGTTCCC
GGTGAATATGCACGTGCTCATGTTACTGCATACAATATTAATATCGGATATAGCTTCATT
GACACTATGTCGAGTGAGATATATCTTATATTGTGATGAAAACAATGGCTCCATCCCGAA
GCCTGCGACAGCTATTGGTGTTGATGACGCATCATAATTAGCTGTAAGGAGAGCTACCAC
CCAACATAAGCAAACTCCACACACATTTTCGATGTTGTCATTATATGGGAACAAGATATC
CGAATCCATAGCGATATCAAATGAACAAATGCAGAATATTATGCCAATTAACCTCAGCTG
GCACCCCCTTCCCCCCCCCCACCACCAATGCACACACACAAACACACGCACACGCAAATT
CTACCTAGTGCTCAACTCCATGATTCCATGAACACGATTGAAGTATATTTTCAAACCTTC
ATTAACCATTGTTATGCATGTGTGTCTATAGATGCATACTGAGAGCATCTACAACCGGAC
GCCTCAAACGACCCATCATACGTCCGCGAACATGTCCGGTCAGTGAAAGGAGAGAGGAGG
GAAAAAGTGACCCAAACAAACCCCTCATATCATTCCTATACGTTTGAGTTGTCCGCGAAC
TCTCATATCCATCTCAAATATAGGGACGATAGGAGGGCTCGCACACGTGGCCGGGCGCGC
CCGGTTAGTCTGCAACGTAGGACGTGACCCCACCCTGGACCATCTTTTTTCTTTCCTTTA
TTCATTCTTTTTCTCTCTCTCTCTTCATCTTTACCAATTCACGTGCAAGTGATCGGACAT
ATGAAGAAGAAAATTATGAGTGTGACTGCGCGGACGGACAAACAAAAGACACATCTGACC
AATGACCGGACGCGTCCGCAAGCGTTTAAGGGGTCATACTTGCTATATCCGACTGTAGAC
ACTCTCATGTTCCTTAAAAATTAGATGGTTCTCTCTCACAAAACATAAATCTAATCTACA
GCTGGAAACGTGCACATCGGATAAAAATGGTACAGGAAATGTTTTAATTTTGGACACCCG
ATTAACGTTTTCTCTAGGCCCTACTATGTTTCTCCTCCAAATGATAAGTGCCACACCTGT
GACAAGGAATGATACCATCCTACACTAAAGTTGTCATCAAAAATCAAAATTTGTCATCCA
AACAAAAAGTTATCATGCTTCACAACTAAAAATGTCATAAAAAACTTCAAGATGAAATTG
CTTCGTGTCACACGCATGACACTTGTCAAGGTCCTTTTTTACTTGGGCATTAGTAAAAAA
AAAAAGAAAAACGATGCGGCCACAGACGGCAGTGGCAGCACGCAAGACGCGGTGACTTGT
CACGCCGCCAGCAAGGGCGCGCGATCCCATCCGCCCGTCCCGCCATCGGACGGTCGGGGT
GCCGCCCAGGCAGCGACCGCAGAAAATGCCGACCCCGTCGCCGCGAGGTTCGTGCCAGCC
GACCACGAGCGCACCACACACGGACACGGAGCAGTGGACGCCCCGACGACTCCATCAAAA
GGGGCAGCAGCTCTAGCTAGCGCAGCACAGCAATCCATCCACCCCCTCTCCTTTCCCCTC
CCCCTCCCCGCCGGATTCCTCCTTCCCCTCCCGACTCCCGAGCTCGGCAATGGTACGTCC
CCCTCCCCGCGCCCGCGATCTCCGCGCGCCGATCTCGCCCCCTTGTCCCGCAGATCGGCG
CTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCCCCGTAGTTCAATTTTCCTCCTGCA
CGGCTGGTGGACGGGCCCTCGATCTCGCCGCTGGTAGACAAGTACTGGCCCGGATCCCCG
GATCGGAGGAAACCGAGGCCGTCCCTTGCTCCACCTCTTTTCCTGCGTCGCCAGCGGTCG
GATCGCGGGACACCCGTCGGCTGCCCTCCTCGCGAATCTCTCGGGCGGAACGCGCGTTTC
GGTCGGTACCACGAGATTCGGCTCGGATCCCTGGTTTTAGGACCTTGTAATCGGTAGATC
CAGGCTGTACACCATCGGATCGCCCATGGAATCTCAGCTGCTCGTTAGCTTCCAGCACTT
GTTGACTATGCCGCGCATCTGTCGGCAGCACTGCCGTAAGTACTTGTGATGATTTACAAC
CTATTGAGCGCCAGTTTTTGTCTCCCAAGAGATCGCTACTAATCCATGCTTGCTTGACAC
TCCTTGGTTGATTGACAGGGATAGAGATCTGGTGGTGTGTGTTTTAAGTTGATGGATAAG
CCTGATTTAGGTGGTTGCAACTGAAAATTGTCTGCCGTACACAAGATTAACAAAATTTAG
GATATGTAGCTCCTGATTTCAACGTTTGTAGGACCGTGACATCTTGAGCCTTTTGCCATT
TCCTCCCCAGTTCATGACATTGTGTACATTTTCGCTCGAGCACCCATGTCCTATGGGGTA
GCACTCTCTTCCATTATTATCTACCAATACAGCACTAACTGCAAAGGCGTTCCTTGAGTT
GTCTGTTTACTTGAGTCTATGATGTTGTTGTTCAAGCAGAATTGAGGTTGCATTATCTGT
GTAACTGTTATATCCATCCTAACTTTCTTCGTGTACCCAGGCAAACGCTTCATCAGGTGC
TGGGATCCATGACGACTGCAAGCTGAGGTTCGTGGAGCTCAAGTCCAAGAGGATGCACCG
CTTCATAACCTACAGGCTGGAGAACCAGAAGGAGGTCATTGTGGACCAAACCGGGCAGCG
CGATGCCACCTATGAGGATTTCACCAAGACCCTCCCTGAAAACGACTGCCGATTCGCAGT
GTTTGACTTCGACTTCACCACCCCGGAGGATGTGCCAAAGAGCAGGATCTTCTATATCTT
CTGGTATGTTGTTCTCCATTCCATGCATTTCCATGAATGGTTAGATCACATCGACCAAAG
TGCTTACCGGGTGCGTTGTGCCTCAACTTGAAAAGGTCCCCGGACACCGCAAAGGTGAGG
AGCAAGATGACGTACGCAAGCACCAACGAGAAGTTCAAGAGGACCCTGGACGGCATCCAG
ATCGAGATGCAGGCCACCGACCCCAGCGAAATCAGCCTGGACGTGATCAAGGAGCGCGCA
CACTAGGGCGGCAAACCAACCATCCATCCAATGCTCTGCCCTTTGGACGCCTCACGGCGA
CATGGATTTATTATGTCAATTATAGATTTGGCGGTGTGACTCTTGAAACTTTCTTGATGA
TTTGTGGCTTTGTTACCGTGTCGAAAGATCCCCGTGGTGAGACCACCACGGAGGTCTTGT
TCTAAGTTCTATCATGTAATCCGTTCCTTCTTCCGCTGCCCATTTATATGCCGGGCGTTA
TGCTGCTGCACTGTTCTTCCAAGTTCTGGTTATAAATAATTAAATGTTCTGTTTGGATTC
GTTCGCAAGGTCCGTGTGTAATTCATCAGCAATTCTCCATGTCTGTTGGATATGATCATC
TTGTGGTATCTGTATTAGCTCTCTTGCTGTGCTCTACCAACCGCACCAACATTTTTTGAG
TTTTGACTGCTAAAACAGTTGAGGTGTGCATATAATAAATAGGATATGATGCTGATGGCG
ACCATGATGCAGAAAGAAAGCAATGGACATGAGGCAAAGCATTCAGCATTTGTACGCTAG
ATTGCTTAGTGCTTTTGCTTGGGGCCTGTGAGTGCAACCCTTCTTCAGGTCCAATCATTC
ATCAGACCACCAGACAAGAAGAATTTTGTAAGAAACCGTTTAGTTCGTGTGAGAAACGAG
AGGATTTCTTTCCCCATATCAGAAATTCCAACTTCAAGTCACGAAGCCGCGGAGATCGAA
TTTTATTCGTTTCGAGGAAACTTAAAATGCAGGACTATAAGAACTTCTAACATGTGATGG
CAGTCGCAAACAGACCAACACACAGGAAATGAATGCATCTACATGAAACTTTCCTCTGAA
AACTTCTGTGCTTCGTTTCCTACAAACCGAATGCATCTACATGGAACTTTCCTCTGGAAA
CCCTCGTTCCAACTACTACAAAGGCACCCAACTTTTCTTGTTCCTGATGTAAAATAGGCC
AAGGGCAGTCAACATCTGCAACCACGATATGCACCCAACAACCCTGCGAAACTTTCAAAC
TCAGCAGAGCACGAGGCAGACCGCGGCAACAAAACGAGCTCCTCAGATAAACTCGAAAGC
GTGTCACAATAGGATATAATCTGGTCTAACCATGGCAGTTCATATAAACGACTCTTTCTC
GGCCCAGTTCAGCAGAGTTACAAAGCTACACCATAAACATTCATTCCACAACACAACCAA
CACCCAGGGAGCAACAAGGGCATACACCGACCAAGCGAAAAAAAGGTTTCGGCGTCATCC
GCAGAAGCTATCTAAAACAGGAACCAACCAACGAACAGAACCGAATCCATCGGAACAGGC
GCATCAGGGTGGGGCGCTTCAGGCGCCGGGGTCAACCCCCGAATCCATCAGAACCGGCAG
ACGCCACGGTCATTTCAGGTGCCAGGGCCCGTCCTGGATCCATGGCGTCATCAGAACCGG
CGGACGCCGCGGTCAAAGACCCTGGCCGAGGGGCACTCGTACGACATATGGCCCCTCCCA
CCGCAGGTGTCGCAGATGACGGTCACCATGCAGTTGCGACTGATGTGGCCCGGCTGGCCA
CATATGCGGCACGAGATGTCGCGGAAGGGCCCGCCGTGGATCTCTGAGGCTAGGGTCGTC
GTCTTAGGGCAGCTGCGGGCCAGGTGGCCTGACACGTTGCAAAGGTTGCAGACGGGGTCG
TTCTTGCACTCGCGTGCAATGTGACCCGGCTGGCGGCAGTTGTTGCAGGCACGGTCGTTG
GTGCAGTCGACCGCGATGTGGCCCGGCTTGAAGCAGTTGTTGCATAGCTTGGCGTTTGAC
CCCGAGGCCGGGCAGTCGCGTGCCATATGCCCTGTCTTGCTGCAAGTGTGGCATAAGGCC
TCGTTCTTGCATTCAGTGGCAATGTGCCCAGACTTCTTGCAGTTCCAGCAAACTGTTTTG
GAAGTGCATTCTGCTGCAAAGTGCCTGACAAAATATATATATTTAAACAAGGAGTTATGG
CCCAACTTTTTAATACTTTTCTGGCAAGATAACATAACAGAAATTAGCCAAAAGGGGCAG
GCAATAATCAAGAACCGCATACTGATCCCCGCAAAATTGGAACAAGTACAAGTGTACAAG
TACAGTAAGAGAGTGCTGGAATTCACTTTACCCTGGAAGATTACAATTATTGCAGGTAGA
AGCAGATGGGCAGTCCCTAGCAATGTGGCCAGGTCTCCTGCAGTTCTTGCAAATAATATC
CCTGGAAAATTATTCAAGTTAAACATGGCATTTTTTCATCAAGGCTGACAGATATATTAT
GATGAAAAAGGTATAATATTTCCATAGCTCGCAAAGAGCATATCAAGATAAATATGTTTG
GAGAGATATCGTTGCTAAGAGATCATCTCTTAATTAAGGCAAGCTTTTTCTGGGGTTTTG
CTCTCCTCCACCTCAGCATTTATCCTACATGGCACTCCTAAGATAGCACCATTGTAAACA
CCCTTAAGGCTCTGTTCTTTGATGTGCTTGTTGAGTGGAATACGGAGTACTAGCAGTAAC
ATATACCTTGGTAAATCTATAAATGTAGTGCGCTACAGGGGGGGGGGGGGGGGGACCATA
CAAGTGGTTTAGTGGTGTTCTAGAAACAACACAGACCTGTTATGGTGTAATACTTTAGGA
ACATGGAAACATCACATTCAATTCATACTTCCTGATGCCAAGTTTCAGTTGTTTCTCAGA
ACGATAATGTTGAAAAATATTGGAGTTTCGTTAATAAAAATGTGTTCCTTATGAGTTAGA
CATCTTTATTTAGTCCCACCTATTCAAATCCTACCGTAGTTAGCAAAGTGGTTCCTAACT
CCAACAAGGGAGACTCTGATACACATTTAACAACTTCCCCAGAATCCAGGCTAGAAACTT
GAGGTGATTGTGAACAAGCAGATGAGGATCTCCTTCATAAACATCCCAATCTGATATGCC
AACTGTTGTCAAGCCATTGACTAACCATCGATTAGTCATCCAGTCAGCCCAAACAAGTCA
GCAGACTTCTGAGTAGACGATAGCCAGTGGAGACCAGTGATCAACTAGCATGGACTGGGC
AGTCGAACTGACACATCTAGATGAGGAAGAACGACTGTAGGGAAGAGAGGAGAGATCCAC
AAGGTACGTGTTAGCCTTGACAGAGGCAGAGGTATGCGACGTTGGCAAATAAATCACACA
AAATTCTGCCATAACAATTTGGAATTGCCATAAATAAACCAGGCAGCCAATTTTCTAGAG
ATATGCATTTCGCTTCGTGGTTTAGTTAATGCAAAGCTATTGGGGTAGTGCCTTGCTGGC
TTGGTCAGACTAAAACCTATTAAAGAGAATGCCAACATGCCTCCAATATTAATTGGTCAA
CTAAAGATGCTTAAATAAATCAAACAAGCACAACAGCTATGTTTAACATATGTATTGACA
CTTCCACAACAAACATTAAACAAAATGTTGATTCATCATTCTATCTTTCCACAAGTGTGC
TAGCTATGGTGTGTCGAATTGTCGATACCAACTCTAATGCAGAAGAGTGTGCAAAGGATA
CACTACTGGACAGCCAACGATGCATGAACTTGTGCTGCGGTTGGTATTCCAGTGAATATT
TCAGGTAACATAAACACTCAGTGTAAATCCAAGCCAGGATAACATATTTTGCAAGCAAGC
TTCTAAGAAGAAAACATCAACAGGTGCACACCTGCGGCTACGACGTTCGCTGCGACGAGG
AGGACTGCGGCCACGACGAGGTGGGCTACGGCTGCGGCGGGATGAACGCTCGCTGCGCAA
CCTATCTCGCCGAGGGCTTCGGCTTCGGCTTCTGCTCCGGCTGCGACTCCTGCTCCTGCT
CTTACTCTTGGTGCTGCTCTTGCTTCTGCTCCTGCTCCGGCTCCTACTCTTGCTTCTGCT
TCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCTTGGCCCTACCCGCGCTCTTGCCACTGCC
GCTGCTGGCGCTTGGTGATGGACTCACCATAACTTGATCCTAGCACATGAATTTAAAAAT
GAACGTCCAATGGTCAGACTCCAAACAGACCCAGGTATAAGACCAAATGAAGGCAAAATC
ACATCTACTAATGGCAACCTTCCTACTCGGCAATCTCTAGCAACAGAATTAAATAACGCC
TGTGTTAAAGGGCATGGACACAGAAACGCTTGGCCAACACCATACATGTTGAGGTAATAC
ATGGATTTCACCATTCTCCAGAAACTAAAGCGACAGGGGGGCCATGACTACACCCACACA
TATTATATACTCCCTCCGTTCCTAAATATAAGTCTTTAAAGAAGTTTCATTAGTGGACTA
TATACGGATGTATATAGACATAACTCATTTTGCTCCGTATGTAGACTACTAGTGAAATAT
CTTAAAAGACTNNNNNNTAGGAACGGAGGGAGTATATTCCAAGCATAACATGCAGCCTAG
CTTCCATCGATTTCGCTACCCCGAGACAAGGTAAGCAGCAAATGGAAAATGTGCAGTGGG
ACATGAGACCCGTATCCAAACCTACCAGCATATCCAATTCAAATCAAGCGTTCAACAGTG
ACTTCCATTTCCAGTACTGCCTGCTACTACTCGGAGACTCGGCGGCCGCCCCGGACCGGG
CGGCGACGGCGTGCGAGGAATGAGACGGTCCAGGGGAGGGGAGGGGAGGG